FvH4_6g47790
WRKY Family

Domain of unknown function (DUF3598)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005862
Physical Location & Seq
Forward (+)
36147320 .. 36150083
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47790.t5

Sequence Viewer

Length: 888 bp
ATGGAGAAGATGAACTCCTCAGTCTCATTCAAACGTTATATATTAAACAAGCTGCATCAAGTGGATATGAAGATGAGGAAGAATGGGCGGAATACAAAATCAAGGAAACCAACATGTTCACTGTGGACAAATATCAACAGTCTGCAGATTGGCTTCTTCCCCAATGAGAGAGCATTTTCTCTGAGGTACCAGACGGCTGGCATGTTAGAAACTGTGTTAAGACAAGGGGTTCTTGGGGAAGATGACACCGGTGAAGAATCTCCAAAAAATCTAAAGCTTCCCTCCCGTAAGCCTTCTATTGTATGTGAGAGTTGTCTATATTCACTGGAAAAGGATATGCGAATACGAGCATTCCAAATCATGGACCCAAAAGGTTTTAGCGAGATGCTTCTCATCTTCCTTGAGGAAAGAGGTGACGGGGTGCTTCTTCCTCCTTCCATCGACAATAATGCGGAAGGCACAGACAGAATTTTGCCATTTCTTGGCAAGTGGAAAGGTCATTCCATAACAAAAAGGAGTGGTGTTTATGGATCAACAATGGCCGAAGCTGATACAGTAGCATCTCTTGAAATAGATGATAACGGCCAAATTATTCAGGACATTAGTTCCACGTCTGCTGCTGGTGATGTTACCACTAATGTGCCGTGGACAGGCATCAAGTCAGACAATTTGGTTACATTTAATGGAGGTTACCAGATGACACTATTGCCTGGTGGCATGTACATGGGATGTCCTTGTGATGTAGGCAAGAATGTTGCGGAATCTGCATCATTCCATCTGGAGTTCTGTTGGGTCGAGTCCCCTGGCAAGAGACAAAGACTAGTTCGCACTTACGATGTTGAAGGTTTGGCTGTATCTACAACTTATTTCTATGAGACAAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3598 WRKY

Protein Analysis

296

Amino Acids

32.96

Weight (kDa)

6.84

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3598_N PF12204 3 - 145 2e-06 Domain of unknown function (DUF3598), N-terminal
BFA1_C PF21053 167 - 301 4.3e-13 Biogenesis factor required for ATP synthase 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AccB7I CCANNNNNTGG 2 cut(s) 361, 482
AciI CCGC 3 cut(s) 88, 452, 758
AclI AACGTT 1 cut(s) 34
AclWI GGATC 1 cut(s) 538
AcoI YGGCCR 2 cut(s) 540, 583
AcsI RAATTY 1 cut(s) 468
AfaI GTAC 2 cut(s) 188, 722
AfiI CCNNNNNNNGG 3 cut(s) 361, 482, 650
AflIII ACRYGT 1 cut(s) 113
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 3 cut(s) 31, 569, 842
AhlI ACTAGT 1 cut(s) 820
AjiI CACGTC 1 cut(s) 612
AjnI CCWGG 2 cut(s) 709, 802
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 3 cut(s) 52, 277, 548
AluI AGCT 3 cut(s) 52, 277, 548
Alw26I GTCTC 3 cut(s) 28, 805, 869
AlwI GGATC 1 cut(s) 538
AoxI GGCC 2 cut(s) 540, 583
ApeKI GCWGC 2 cut(s) 52, 617
ApoI RAATTY 1 cut(s) 468
AsiGI ACCGGT 1 cut(s) 248
Asp718I GGTACC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 364
AsuHPI GGTGA 3 cut(s) 263, 425, 635
AvaII GGWCC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 39, 604
BccI CCATC 2 cut(s) 446, 783
BceAI ACGGC 3 cut(s) 210, 598, 628
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 2 cut(s) 711, 804
BcoDI GTCTC 3 cut(s) 28, 805, 869
BcuI ACTAGT 1 cut(s) 820
BfaI CTAG 1 cut(s) 821
BfmI CTRYAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 53, 618
BlsI GCNGC 2 cut(s) 54, 619
Bme1390I CCNGG 2 cut(s) 711, 804
Bme18I GGWCC 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 188, 366
BmrFI CCNGG 2 cut(s) 711, 804
BmsI GCATC 5 cut(s) 64, 375, 569, 663, 776
BpmI CTGGAG 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 644, 802
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 482, 650
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 711, 804
BseDI CCNNGG 2 cut(s) 644, 802
BseGI GGATG 1 cut(s) 734
BseLI CCNNNNNNNGG 3 cut(s) 361, 482, 650
BseMII CTCAG 2 cut(s) 33, 173
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 39, 604
BshFI GGCC 2 cut(s) 542, 585
BshNI GGYRCC 1 cut(s) 186
BshTI ACCGGT 1 cut(s) 248
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 3 cut(s) 361, 482, 650
BsmAI GTCTC 3 cut(s) 28, 805, 869
BsmFI GGGAC 1 cut(s) 784
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 542, 585
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 1 cut(s) 530
BspACI CCGC 3 cut(s) 88, 452, 758
BspANI GGCC 2 cut(s) 542, 585
BspCNI CTCAG 2 cut(s) 32, 174
BspLI GGNNCC 2 cut(s) 188, 366
BspMAI CTGCAG 1 cut(s) 147
BspPI GGATC 1 cut(s) 538
BspT107I GGYRCC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 644, 802
BssMI GATC 1 cut(s) 530
Bst2UI CCWGG 2 cut(s) 711, 804
Bst4CI ACNGT 4 cut(s) 123, 140, 214, 556
BstAUI TGTACA 1 cut(s) 720
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 19, 182
BstDSI CCRYGG 1 cut(s) 644
BstEII GGTNACC 1 cut(s) 689
BstF5I GGATG 1 cut(s) 734
BstKTI GATC 1 cut(s) 533
BstMAI GTCTC 3 cut(s) 28, 805, 869
BstMBI GATC 1 cut(s) 530
BstMWI GCNNNNNNNGC 1 cut(s) 764
BstNI CCWGG 2 cut(s) 711, 804
BstNSI RCATGY 3 cut(s) 117, 205, 721
BstPI GGTNACC 1 cut(s) 689
BstSCI CCNGG 2 cut(s) 709, 802
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 39, 604
BstXI CCANNNNNNTGG 1 cut(s) 197
BsuRI GGCC 2 cut(s) 542, 585
BtgI CCRYGG 1 cut(s) 644
BtrI CACGTC 1 cut(s) 612
BtsCI GGATG 1 cut(s) 734
BtsIMutI CAGTG 2 cut(s) 119, 323
Cac8I GCNNGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 364
Csp6I GTAC 2 cut(s) 187, 721
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 5 cut(s) 114, 202, 361, 718, 724
CviJI RGCY 9 cut(s) 52, 153, 197, 277, 292, 542, 548, 585, 851
CviKI_1 RGCY 9 cut(s) 52, 153, 197, 277, 292, 542, 548, 585, 851
CviQI GTAC 2 cut(s) 187, 721
DdeI CTNAG 2 cut(s) 19, 182
DpnI GATC 1 cut(s) 532
DpnII GATC 1 cut(s) 530
EaeI YGGCCR 2 cut(s) 540, 583
EciI GGCGGA 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 364
Eco91I GGTNACC 1 cut(s) 689
EcoO65I GGTNACC 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 709, 802
FaeI CATG 5 cut(s) 117, 205, 364, 721, 727
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 784
FatI CATG 5 cut(s) 113, 201, 360, 717, 723
Fnu4HI GCNGC 2 cut(s) 53, 618
FokI GGATG 1 cut(s) 741
Fsp4HI GCNGC 2 cut(s) 53, 618
FspBI CTAG 1 cut(s) 821
GluI GCNGC 2 cut(s) 53, 618
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 2 cut(s) 542, 585
HapII CCGG 1 cut(s) 249
Hin1II CATG 5 cut(s) 117, 205, 364, 721, 727
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 257, 761, 797
HpaII CCGG 1 cut(s) 249
HphI GGTGA 3 cut(s) 263, 425, 635
Hpy166II GTNNAC 3 cut(s) 119, 126, 648
Hpy188I TCNGA 2 cut(s) 183, 664
Hpy188III TCNNGA 3 cut(s) 566, 596, 779
Hpy8I GTNNAC 3 cut(s) 119, 126, 648
HpyAV CCTTC 4 cut(s) 303, 444, 449, 836
HpyCH4III ACNGT 4 cut(s) 123, 140, 214, 556
HpyCH4IV ACGT 2 cut(s) 34, 611
HpyCH4V TGCA 3 cut(s) 55, 145, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 764
HpyF3I CTNAG 2 cut(s) 19, 182
HpySE526I ACGT 2 cut(s) 34, 611
Hsp92II CATG 5 cut(s) 117, 205, 364, 721, 727
KpnI GGTACC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 530
Lsp1109I GCAGC 2 cut(s) 39, 604
LweI GCATC 5 cut(s) 64, 375, 569, 663, 776
MaeI CTAG 1 cut(s) 821
MaeII ACGT 2 cut(s) 34, 611
MaeIII GTNAC 4 cut(s) 413, 628, 673, 689
MalI GATC 1 cut(s) 532
MboI GATC 1 cut(s) 530
MboII GAAGA 8 cut(s) 19, 82, 91, 148, 251, 266, 388, 419
MluCI AATT 3 cut(s) 468, 588, 667
MlyI GAGTC 1 cut(s) 806
MnlI CCTC 8 cut(s) 28, 69, 177, 292, 397, 404, 441, 680
MseI TTAA 3 cut(s) 44, 218, 681
MslI CAYNNNNRTG 2 cut(s) 638, 722
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 711, 804
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 2 cut(s) 711, 804
MwoI GCNNNNNNNGC 1 cut(s) 764
NdeII GATC 1 cut(s) 530
NlaIII CATG 5 cut(s) 117, 205, 364, 721, 727
NlaIV GGNNCC 2 cut(s) 188, 366
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 3 cut(s) 117, 205, 721
OliI CACNNNNGTG 1 cut(s) 638
PciI ACATGT 1 cut(s) 113
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 257, 761
PflMI CCANNNNNTGG 2 cut(s) 361, 482
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 2 cut(s) 54, 619
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
PscI ACATGT 1 cut(s) 113
Psp1406I AACGTT 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 709, 802
PspEI GGTNACC 1 cut(s) 689
PspGI CCWGG 2 cut(s) 709, 802
PspN4I GGNNCC 2 cut(s) 188, 366
PspPI GGNCC 1 cut(s) 364
PstI CTGCAG 1 cut(s) 147
RsaI GTAC 2 cut(s) 188, 722
RsaNI GTAC 2 cut(s) 187, 721
RseI CAYNNNNRTG 2 cut(s) 638, 722
SaqAI TTAA 3 cut(s) 44, 218, 681
SatI GCNGC 2 cut(s) 53, 618
Sau3AI GATC 1 cut(s) 530
Sau96I GGNCC 1 cut(s) 364
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 2 cut(s) 711, 804
SfaNI GCATC 5 cut(s) 64, 375, 569, 663, 776
SfcI CTRYAG 1 cut(s) 143
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 638, 722
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 820
Sse9I AATT 3 cut(s) 468, 588, 667
SsiI CCGC 3 cut(s) 88, 452, 758
SspMI CTAG 1 cut(s) 821
StyD4I CCNGG 2 cut(s) 709, 802
TaaI ACNGT 4 cut(s) 123, 140, 214, 556
TaiI ACGT 2 cut(s) 37, 614
TaqI TCGA 2 cut(s) 441, 795
TasI AATT 3 cut(s) 468, 588, 667
TatI WGTACW 1 cut(s) 720
TfiI GAWTC 2 cut(s) 257, 761
Tru1I TTAA 3 cut(s) 44, 218, 681
Tru9I TTAA 3 cut(s) 44, 218, 681
TscAI CASTG 2 cut(s) 126, 330
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 52, 617
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 26, 83
TspRI CASTG 2 cut(s) 126, 330
Van91I CCANNNNNTGG 2 cut(s) 361, 482
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 468
XceI RCATGY 3 cut(s) 117, 205, 721
XspI CTAG 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.