Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005862

Physical Location & Seq

Genomic Coordinates Reverse (-)

4206039 .. 4208537

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1054200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCTTCCACTTACTGCTACTCACTTTCACTCCCTCCCATCCCCAACCCACCAAACCTCAACAAAATCCAACTCCTACCCACCAACCTTTACACCACGAACCCGTTTTCTCGCTCCATTGCTACAATCCGGAGCCCCGGAATCCGAGCTTCCAACTTGTCTTCTTCCACCGCAGTCCAAGATGAAGCTCGAAAGCCCAGCGAGGAAGCAATGAGCATCGACAATCTTTGCGGCTTCGTTAATCTGAACGTGGGAAATTGGCAAGGTTCCTTCTTTATTGAATTTTTATTCCTGCATTTTCTGGGTAGCCAAACAGATAATGTGTGTTCAGATAACAGGAATCATATGAATTCTGGTCAATTTGATACTGTTGGGAATCTGTTGCATAAAGTGAGTACAAAGCTTGCAGCTAGCTCTTATGGGGAAGATGAACTCATCAGTCTCATTCAAACATTATATATTAAACAAGCTCCATCAAGCACTTCATTTTCTGAATTAGATGAGGAGGTGGAGTGGGCGGAGTACAAAATTAAAGAAACGAACATGTTCACGGTGGACAAGTATCAGCAGATTGGCTTCTTCCCCAATGAGAAAGCATTTTCGCTAAGGTACCAGACGGCTGGCATGTTAGAAACAGTGCTGAGACAGGGCGTTCTTGGGGAAGATGACGCCGGTGAAGAATCACCAAAAAATCTAAAGCTCCCTTCCCATCGTCCTGCTATTGTATGTGAAAGTTGTCTGCATTCACTAGAGAAGGATATGCGAGTAAGAGCTTTCCACATCATGGACCCTAAAGGCATTATCGAAATGATTCTCATCTTCCTGGAGGAAAGAGGAGATGGCGCAGTTCTTCCTCCTGCCCTCGACAATAACGTGGAAAACACAGACAGGATTGTGCCATTTCTTGGTACGTGGAAAGGTCACTCCGTAACAAAACGAAGTGGTGTTTATGGATCAACAATGGCTGAAGCTGATATAGTAGCAACACTTGAGATGGATGATAACGGCCACGTTATTCAGGGCATCACTTCCACCTCCGCTGCGGGTGATGTTACAACTAATGTGCCTTGGACGGGGATCAAGTCGGACAACTTGATTACTTTCAACGGAGGTTATCAGATGACTCTATTGCCCGGAGGCATGTACATGGGATGCCCGTGCGAGGTAGGAAACAATGTTGCAGAATCGTTGTCGTTCCATTTGGAGTTCTGTTGGCTTGAGGGACTTGGCAAGAGACAGAGACTGGTTCGCACTTACGATGTTGAAGGTCAGGCCGTCTCCACAACTTACTTCCACGAGACTAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3598 WRKY

Protein Analysis

437

Amino Acids

48.28

Weight (kDa)

5.0

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3598_N	PF12204	120 - 279	6.2e-08	Domain of unknown function (DUF3598), N-terminal
BFA1_C	PF21053	301 - 436	1.1e-12	Biogenesis factor required for ATP synthase 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29185 AT3G29185
fragaria_vesca	FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790
malus_domestica	MD09G1056700.v1.1 MD17G1054200.v1.1
prunus_persica	Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1
pyrus_communis	pycom111g04750 pycom17g05190
rosa_chinensis	RchiOBHm_Chr2g0166981
rosa_laevigata	RLG00000021686
rosa_multiflora	Rmu_sc0002735.1_g000026 Rmu_sc0010966.1_g000002 Rmu_sc0025421.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083840
rosa_rugosa	Rorug02G0527100
rosa_samantha	Rh2AG594000 Rh2BG605500 Rh2CG576400 Rh2DG617000
rosa_wichuraiana	Rw2G049460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	609
AccB7I	CCANNNNNTGG	2 cut(s)	784, 905
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	5 cut(s)	171, 231, 518, 1038, 1043
AclWI	GGATC	2 cut(s)	961, 1085
AcoI	YGGCCR	1 cut(s)	1006
AcsI	RAATTY	2 cut(s)	281, 349
AcuI	CTGAAG	1 cut(s)	987
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	5 cut(s)	397, 524, 611, 910, 1145
AfiI	CCNNNNNNNGG	4 cut(s)	784, 905, 1073, 1162
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	4 cut(s)	281, 449, 1105, 1265
AjnI	CCWGG	1 cut(s)	822
AluBI	AGCT	9 cut(s)	149, 188, 403, 410, 414, 470, 700, 773, 971
AluI	AGCT	9 cut(s)	149, 188, 403, 410, 414, 470, 700, 773, 971
Alw26I	GTCTC	6 cut(s)	446, 637, 1228, 1234, 1282, 1292
AlwI	GGATC	2 cut(s)	961, 1085
AlwNI	CAGNNNCTG	1 cut(s)	1243
Aor13HI	TCCGGA	1 cut(s)	129
AoxI	GGCC	2 cut(s)	1006, 1272
ApeKI	GCWGC	2 cut(s)	407, 1040
ApoI	RAATTY	2 cut(s)	281, 349
Asp700I	GAANNNNTTC	2 cut(s)	545, 810
Asp718I	GGTACC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	845
AspS9I	GGNCC	1 cut(s)	787
AsuC2I	CCSGG	2 cut(s)	138, 1134
AsuHPI	GGTGA	3 cut(s)	675, 686, 1058
AsuNHI	GCTAGC	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	787
BanI	GGYRCC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	1295
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	419, 1027
BccI	CCATC	5 cut(s)	47, 481, 717, 833, 988
BceAI	ACGGC	3 cut(s)	633, 1021, 1259
BciT130I	CCWGG	1 cut(s)	824
BcnI	CCSGG	2 cut(s)	138, 1134
BcoDI	GTCTC	6 cut(s)	446, 637, 1228, 1234, 1282, 1292
BfaI	CTAG	2 cut(s)	411, 749
BisI	GCNGC	3 cut(s)	232, 408, 1041
BlsI	GCNGC	3 cut(s)	233, 409, 1042
Bme1390I	CCNGG	3 cut(s)	138, 824, 1134
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	4 cut(s)	134, 268, 611, 789
BmrFI	CCNGG	3 cut(s)	138, 824, 1134
BmsI	GCATC	3 cut(s)	225, 1032, 1142
BmtI	GCTAGC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	845
Bpu10I	CCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	1010, 1238
BpuMI	CCSGG	2 cut(s)	138, 1134
BsaAI	YACGTR	1 cut(s)	912
BsaBI	GATNNNNATC	1 cut(s)	815
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	136, 1067
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 497, 527
Bsc4I	CCNNNNNNNGG	4 cut(s)	784, 905, 1073, 1162
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	1248
Bse3DI	GCAATG	2 cut(s)	117, 216
Bse8I	GATNNNNATC	1 cut(s)	815
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	824
BseDI	CCNNGG	2 cut(s)	136, 1067
BseGI	GGATG	3 cut(s)	39, 1003, 1157
BseJI	GATNNNNATC	1 cut(s)	815
BseLI	CCNNNNNNNGG	4 cut(s)	784, 905, 1073, 1162
BseMI	GCAATG	2 cut(s)	117, 216
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	1248
BseRI	GAGGAG	2 cut(s)	518, 849
BseXI	GCAGC	2 cut(s)	419, 1027
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	2 cut(s)	1008, 1274
BshNI	GGYRCC	1 cut(s)	609
BsiSI	CCGG	4 cut(s)	130, 138, 672, 1134
BslFI	GGGAC	1 cut(s)	1236
BslI	CCNNNNNNNGG	4 cut(s)	784, 905, 1073, 1162
BsmAI	GTCTC	6 cut(s)	446, 637, 1228, 1234, 1282, 1292
BsmBI	CGTCTC	1 cut(s)	1282
BsmFI	GGGAC	1 cut(s)	1236
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	2 cut(s)	1008, 1274
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	1143
Bsp143I	GATC	2 cut(s)	953, 1077
BspACI	CCGC	5 cut(s)	171, 231, 518, 1038, 1043
BspANI	GGCC	2 cut(s)	1008, 1274
BspCNI	CTCAG	1 cut(s)	633
BspEI	TCCGGA	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	134, 268, 611, 789
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	961, 1085
BspT107I	GGYRCC	1 cut(s)	609
BsrDI	GCAATG	2 cut(s)	117, 216
BsrFI	RCCGGY	1 cut(s)	671
BsrGI	TGTACA	1 cut(s)	1143
BsrI	ACTGG	1 cut(s)	1248
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	2 cut(s)	136, 1067
BssMI	GATC	2 cut(s)	953, 1077
BssNI	GRCGYC	1 cut(s)	669
BssSI	CACGAG	1 cut(s)	1295
BssT1I	CCWWGG	1 cut(s)	1067
Bst2BI	CACGAG	1 cut(s)	1295
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	3 cut(s)	370, 553, 637
BstACI	GRCGYC	1 cut(s)	669
BstAUI	TGTACA	1 cut(s)	1143
BstBAI	YACGTR	1 cut(s)	912
BstC8I	GCNNGC	3 cut(s)	405, 412, 622
BstDEI	CTNAG	2 cut(s)	605, 641
BstF5I	GGATG	3 cut(s)	39, 1003, 1157
BstHHI	GCGC	1 cut(s)	845
BstKTI	GATC	2 cut(s)	956, 1080
BstMAI	GTCTC	6 cut(s)	446, 637, 1228, 1234, 1282, 1292
BstMBI	GATC	2 cut(s)	953, 1077
BstNI	CCWGG	1 cut(s)	824
BstNSI	RCATGY	3 cut(s)	547, 628, 1144
BstSCI	CCNGG	3 cut(s)	136, 822, 1132
BstV1I	GCAGC	2 cut(s)	419, 1027
BstV2I	GAAGAC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	1008, 1274
BtsCI	GGATG	3 cut(s)	39, 1003, 1157
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	3 cut(s)	405, 412, 622
CaiI	CAGNNNCTG	1 cut(s)	1243
CfoI	GCGC	1 cut(s)	845
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	1 cut(s)	787
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	5 cut(s)	396, 523, 610, 909, 1144
CviAII	CATG	5 cut(s)	544, 625, 784, 1141, 1147
CviQI	GTAC	5 cut(s)	396, 523, 610, 909, 1144
DdeI	CTNAG	2 cut(s)	605, 641
DpnI	GATC	2 cut(s)	955, 1079
DpnII	GATC	2 cut(s)	953, 1077
EaeI	YGGCCR	1 cut(s)	1006
EciI	GGCGGA	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	1067
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	987
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	822
EcoT14I	CCWWGG	1 cut(s)	1067
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	1067
Esp3I	CGTCTC	1 cut(s)	1282
FaeI	CATG	5 cut(s)	547, 628, 787, 1144, 1150
FaqI	GGGAC	1 cut(s)	1236
FatI	CATG	5 cut(s)	543, 624, 783, 1140, 1146
FauI	CCCGC	1 cut(s)	1036
FauNDI	CATATG	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	232, 408, 1041
FokI	GGATG	3 cut(s)	26, 1010, 1164
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	232, 408, 1041
FspBI	CTAG	2 cut(s)	411, 749
GlaI	GCGC	1 cut(s)	844
GluI	GCNGC	3 cut(s)	232, 408, 1041
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	845
HaeIII	GGCC	2 cut(s)	1008, 1274
HapII	CCGG	4 cut(s)	130, 138, 672, 1134
HgaI	GACGC	1 cut(s)	677
HhaI	GCGC	1 cut(s)	845
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	5 cut(s)	547, 628, 787, 1144, 1150
Hin6I	GCGC	1 cut(s)	843
HinP1I	GCGC	1 cut(s)	843
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	7 cut(s)	141, 340, 376, 680, 811, 1123, 1184
HpaII	CCGG	4 cut(s)	130, 138, 672, 1134
HphI	GGTGA	3 cut(s)	675, 686, 1058
Hpy166II	GTNNAC	2 cut(s)	549, 556
Hpy188I	TCNGA	6 cut(s)	146, 246, 331, 493, 1087, 1119
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	549, 556
HpyAV	CCTTC	4 cut(s)	280, 714, 748, 1259
HpyCH4III	ACNGT	3 cut(s)	370, 553, 637
HpyCH4IV	ACGT	4 cut(s)	249, 873, 911, 1011
HpyCH4V	TGCA	5 cut(s)	295, 385, 407, 742, 1181
HpyF3I	CTNAG	2 cut(s)	605, 641
HpySE526I	ACGT	4 cut(s)	249, 873, 911, 1011
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	5 cut(s)	547, 628, 787, 1144, 1150
HspAI	GCGC	1 cut(s)	843
Kpn2I	TCCGGA	1 cut(s)	129
KpnI	GGTACC	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	953, 1077
LmnI	GCTCC	4 cut(s)	119, 132, 475, 705
Lsp1109I	GCAGC	2 cut(s)	419, 1027
LweI	GCATC	3 cut(s)	225, 1032, 1142
MaeI	CTAG	2 cut(s)	411, 749
MaeII	ACGT	4 cut(s)	249, 873, 911, 1011
MaeIII	GTNAC	3 cut(s)	920, 928, 1051
MalI	GATC	2 cut(s)	955, 1079
MboI	GATC	2 cut(s)	953, 1077
MboII	GAAGA	8 cut(s)	153, 156, 437, 571, 674, 689, 811, 842
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	6 cut(s)	256, 281, 349, 359, 494, 528
MlyI	GAGTC	1 cut(s)	1117
MmeI	TCCRAC	3 cut(s)	94, 177, 1065
MroI	TCCGGA	1 cut(s)	129
MroXI	GAANNNNTTC	2 cut(s)	545, 810
MseI	TTAA	3 cut(s)	240, 462, 531
MslI	CAYNNNNRTG	1 cut(s)	1145
MspA1I	CMGCKG	1 cut(s)	1040
MspI	CCGG	4 cut(s)	130, 138, 672, 1134
MspR9I	CCNGG	3 cut(s)	138, 824, 1134
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	824
NciI	CCSGG	2 cut(s)	138, 1134
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	2 cut(s)	953, 1077
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	5 cut(s)	547, 628, 787, 1144, 1150
NlaIV	GGNNCC	4 cut(s)	134, 268, 611, 789
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	3 cut(s)	547, 628, 1144
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PctI	GAATGC	1 cut(s)	742
PdmI	GAANNNNTTC	2 cut(s)	545, 810
PfeI	GAWTC	6 cut(s)	141, 340, 376, 680, 811, 1184
PflMI	CCANNNNNTGG	2 cut(s)	784, 905
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	3 cut(s)	233, 409, 1042
PleI	GAGTC	1 cut(s)	1117
PpsI	GAGTC	1 cut(s)	1117
Ppu21I	YACGTR	1 cut(s)	912
PscI	ACATGT	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	822
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	4 cut(s)	134, 268, 611, 789
PspPI	GGNCC	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	1243
RsaI	GTAC	5 cut(s)	397, 524, 611, 910, 1145
RsaNI	GTAC	5 cut(s)	396, 523, 610, 909, 1144
RseI	CAYNNNNRTG	1 cut(s)	1145
SaqAI	TTAA	3 cut(s)	240, 462, 531
SatI	GCNGC	3 cut(s)	232, 408, 1041
Sau3AI	GATC	2 cut(s)	953, 1077
Sau96I	GGNCC	1 cut(s)	787
SchI	GAGTC	1 cut(s)	1117
ScrFI	CCNGG	3 cut(s)	138, 824, 1134
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	3 cut(s)	225, 1032, 1142
SgrAI	CRCCGGYG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	787
SmiMI	CAYNNNNRTG	1 cut(s)	1145
SmlI	CTYRAG	2 cut(s)	989, 1217
SmoI	CTYRAG	2 cut(s)	989, 1217
Sse9I	AATT	6 cut(s)	256, 281, 349, 359, 494, 528
SsiI	CCGC	5 cut(s)	171, 231, 518, 1038, 1043
SspMI	CTAG	2 cut(s)	411, 749
StyD4I	CCNGG	3 cut(s)	136, 822, 1132
StyI	CCWWGG	1 cut(s)	1067
TaaI	ACNGT	3 cut(s)	370, 553, 637
TaiI	ACGT	4 cut(s)	252, 876, 914, 1014
TaqI	TCGA	4 cut(s)	190, 219, 804, 864
TasI	AATT	6 cut(s)	256, 281, 349, 359, 494, 528
TatI	WGTACW	3 cut(s)	395, 522, 1143
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	6 cut(s)	141, 340, 376, 680, 811, 1184
Tru1I	TTAA	3 cut(s)	240, 462, 531
Tru9I	TTAA	3 cut(s)	240, 462, 531
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	2 cut(s)	407, 1040
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	4 cut(s)	198, 362, 444, 474
TspGWI	ACGGA	2 cut(s)	916, 1122
TspRI	CASTG	1 cut(s)	642
Van91I	CCANNNNNTGG	2 cut(s)	784, 905
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	2 cut(s)	281, 349
XceI	RCATGY	3 cut(s)	547, 628, 1144
XmnI	GAANNNNTTC	2 cut(s)	545, 810
XspI	CTAG	2 cut(s)	411, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.