Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005862

Physical Location & Seq

Genomic Coordinates Reverse (-)

6431497 .. 6435246

Gene Structure 3750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCGCCTATTCGCACTTGCCTCTAGCATCTTCGTGAGTCATCCTTTAGACGAGAGGATCCTTTTCAGGATCAAGACTACGAATGATTATGGGGTGCTTGAAGGTTTGACTTTTGTCAAAATGCCTAAGCATCCCCATCAACACGATAACAAGTTCCAAGCTGAGGCATGGCGTGTTCCCCAAAATCCTTCATCTCAAACTCGGATTTCAAGTGTTCAGCGGGTGGTGCTACGTCTCTTTATAGAGACATTATTCATTAGTTTGCGTGATCTTTTTCAGCAATTTGATGCTTTCGGGAATCTGTTGCATAAAGTGAATACCAAGCTTTCAGCTAGTTCTTATGGAGAAGATCAACTCCTCAGTCTTATTCAAACATTATATATTAAACAAGCTACATCAAGTGGATATGAAGATGAGGAAGAATGGGCAGAATACAAAATTAAGGAAACCAACATGTTTACTGTGGACAAATATCAACAGATTGGCTTCTTCCCCAATGAGAGAGCATTTTCTCTAAGGTACCAGACGGCTGGCATGTTAGAAACTGTGTTAAGACAAGGGGTTCTTGGGGAAGATGACACTGGTGAAGAACATCCAAAAAATCTAAAGCTTCCCTCCCGTCAGCCTTCTATTGTATGTGAGAATTGTCTATATTCACTCGAAAAAGATATGCGAGTAAGAGCATTCCATATCATGGACCCAAAAGGTATTAGCGAGATGCTTCTTATCTTCCTTGAGGAAAGAGGTGATGGGGTGCTTCTTCCTCCTTCCATTGACAATAACGTGGAAAGCACAGACAGGATTTTGCCATTTCTTGGTAAGTGGAAGGGTCATTCCATAACAAAAAGAAGTGGTGTTTATGGATCAACAATGGCCGAAGCTGATACTGTGGCATCTCTTGAAATAGATGACAACGGCCAAATTATTCAGGACATTACTTCCACCTCTGCTGCTGGTGATGTTACCACTAATGTGCCATGGACGGGCATCAAGTCGGACAATTTGGTTACATTTAATGGAGGTTACCAGATGATACTATTGCCTGGTGGCATGTACATGGGATGTCCATGTGATGTAGGCAAGAATGTTGCGGAATCTGTATCATTCCATTTGGAGTTCTGTTGGGTTGAGGCCCTCGGCAAGAGACAAAGACTAGTTCGCACTTACGATGTTGAAGGTTTGGCTGTCTCTACAACATACTTCTATGAGACAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3598 WRKY

Protein Analysis

406

Amino Acids

45.98

Weight (kDa)

5.4

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3598_N	PF12204	91 - 249	6.6e-09	Domain of unknown function (DUF3598), N-terminal
BFA1_C	PF21053	271 - 405	4.2e-12	Biogenesis factor required for ATP synthase 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29185 AT3G29185
fragaria_vesca	FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790
malus_domestica	MD09G1056700.v1.1 MD17G1054200.v1.1
prunus_persica	Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1
pyrus_communis	pycom111g04750 pycom17g05190
rosa_chinensis	RchiOBHm_Chr2g0166981
rosa_laevigata	RLG00000021686
rosa_multiflora	Rmu_sc0002735.1_g000026 Rmu_sc0010966.1_g000002 Rmu_sc0025421.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083840
rosa_rugosa	Rorug02G0527100
rosa_samantha	Rh2AG594000 Rh2BG605500 Rh2CG576400 Rh2DG617000
rosa_wichuraiana	Rw2G049460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	519
AccB7I	CCANNNNNTGG	2 cut(s)	694, 815
AciI	CCGC	2 cut(s)	220, 1091
AclWI	GGATC	4 cut(s)	52, 65, 77, 871
AcoI	YGGCCR	2 cut(s)	873, 916
AcsI	RAATTY	1 cut(s)	1214
AfaI	GTAC	2 cut(s)	521, 1055
AfiI	CCNNNNNNNGG	4 cut(s)	163, 694, 815, 983
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	5 cut(s)	101, 210, 371, 902, 1175
AhlI	ACTAGT	1 cut(s)	1153
AjnI	CCWGG	1 cut(s)	1042
AleI	CACNNNNGTG	1 cut(s)	971
AluBI	AGCT	6 cut(s)	161, 325, 332, 392, 610, 881
AluI	AGCT	6 cut(s)	161, 325, 332, 392, 610, 881
Alw26I	GTCTC	5 cut(s)	239, 239, 1138, 1192, 1202
AlwI	GGATC	4 cut(s)	52, 65, 77, 871
AoxI	GGCC	3 cut(s)	873, 916, 1131
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	1 cut(s)	1214
Asp718I	GGTACC	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	697, 1132
AsuHPI	GGTGA	3 cut(s)	596, 758, 968
AvaII	GGWCC	1 cut(s)	697
BamHI	GGATCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	519
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	937
BccI	CCATC	2 cut(s)	144, 743
BceAI	ACGGC	2 cut(s)	543, 931
BciT130I	CCWGG	1 cut(s)	1044
BcoDI	GTCTC	5 cut(s)	239, 239, 1138, 1192, 1202
BcuI	ACTAGT	1 cut(s)	1153
BfaI	CTAG	3 cut(s)	24, 333, 1154
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
Bme1390I	CCNGG	1 cut(s)	1044
Bme18I	GGWCC	1 cut(s)	697
BmgT120I	GGNCC	2 cut(s)	697, 1132
BmiI	GGNNCC	3 cut(s)	59, 521, 699
BmrFI	CCNGG	1 cut(s)	1044
BmsI	GCATC	6 cut(s)	36, 139, 277, 708, 902, 996
BoxI	GACNNNNGTC	1 cut(s)	113
Bpu10I	CCTNAGC	2 cut(s)	126, 162
BpuEI	CTTGAG	1 cut(s)	755
BsaJI	CCNNGG	2 cut(s)	977, 1135
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 694, 815, 983
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	1044
BseDI	CCNNGG	2 cut(s)	977, 1135
BseGI	GGATG	4 cut(s)	40, 130, 592, 1067
BseLI	CCNNNNNNNGG	4 cut(s)	163, 694, 815, 983
BseMII	CTCAG	2 cut(s)	153, 373
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	937
BshFI	GGCC	3 cut(s)	875, 918, 1133
BshNI	GGYRCC	1 cut(s)	519
BslI	CCNNNNNNNGG	4 cut(s)	163, 694, 815, 983
BsmAI	GTCTC	5 cut(s)	239, 239, 1138, 1192, 1202
BsmBI	CGTCTC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	875, 918, 1133
Bsp1407I	TGTACA	1 cut(s)	1053
Bsp143I	GATC	5 cut(s)	57, 69, 268, 349, 863
Bsp19I	CCATGG	1 cut(s)	977
BspACI	CCGC	2 cut(s)	220, 1091
BspANI	GGCC	3 cut(s)	875, 918, 1133
BspCNI	CTCAG	2 cut(s)	154, 372
BspLI	GGNNCC	3 cut(s)	59, 521, 699
BspPI	GGATC	4 cut(s)	52, 65, 77, 871
BspT107I	GGYRCC	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	1053
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	977, 1135
BssMI	GATC	5 cut(s)	57, 69, 268, 349, 863
BssT1I	CCWWGG	1 cut(s)	977
Bst2UI	CCWGG	1 cut(s)	1044
Bst4CI	ACNGT	3 cut(s)	463, 547, 889
BstAUI	TGTACA	1 cut(s)	1053
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	4 cut(s)	126, 162, 359, 515
BstDSI	CCRYGG	1 cut(s)	977
BstEII	GGTNACC	1 cut(s)	1022
BstF5I	GGATG	4 cut(s)	40, 130, 592, 1067
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	60, 72, 271, 352, 866
BstMAI	GTCTC	5 cut(s)	239, 239, 1138, 1192, 1202
BstMBI	GATC	5 cut(s)	57, 69, 268, 349, 863
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	1044
BstNSI	RCATGY	3 cut(s)	457, 538, 1054
BstPAI	GACNNNNGTC	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	1022
BstSCI	CCNGG	1 cut(s)	1042
BstV1I	GCAGC	1 cut(s)	937
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	875, 918, 1133
BtgI	CCRYGG	1 cut(s)	977
BtsCI	GGATG	4 cut(s)	40, 130, 592, 1067
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	532
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	697, 1132
Csp6I	GTAC	2 cut(s)	520, 1054
CviAII	CATG	8 cut(s)	168, 454, 535, 694, 978, 1051, 1057, 1068
CviQI	GTAC	2 cut(s)	520, 1054
DdeI	CTNAG	4 cut(s)	126, 162, 359, 515
DpnI	GATC	5 cut(s)	59, 71, 270, 351, 865
DpnII	GATC	5 cut(s)	57, 69, 268, 349, 863
EaeI	YGGCCR	2 cut(s)	873, 916
Eco130I	CCWWGG	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	697
Eco91I	GGTNACC	1 cut(s)	1022
EcoO109I	RGGNCCY	1 cut(s)	1132
EcoO65I	GGTNACC	1 cut(s)	1022
EcoRII	CCWGG	1 cut(s)	1042
EcoT14I	CCWWGG	1 cut(s)	977
ErhI	CCWWGG	1 cut(s)	977
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	8 cut(s)	171, 457, 538, 697, 981, 1054, 1060, 1071
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	8 cut(s)	167, 453, 534, 693, 977, 1050, 1056, 1067
FauI	CCCGC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	951
FokI	GGATG	4 cut(s)	27, 117, 579, 1074
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	3 cut(s)	24, 333, 1154
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	951
HaeIII	GGCC	3 cut(s)	875, 918, 1133
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	8 cut(s)	171, 457, 538, 697, 981, 1054, 1060, 1071
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	2 cut(s)	323, 608
HinfI	GANTC	3 cut(s)	37, 298, 1094
HphI	GGTGA	3 cut(s)	596, 758, 968
Hpy166II	GTNNAC	2 cut(s)	459, 466
Hpy188I	TCNGA	2 cut(s)	204, 997
Hpy188III	TCNNGA	6 cut(s)	34, 67, 73, 295, 899, 929
Hpy8I	GTNNAC	2 cut(s)	459, 466
HpyAV	CCTTC	6 cut(s)	95, 198, 636, 777, 820, 1169
HpyCH4III	ACNGT	3 cut(s)	463, 547, 889
HpyCH4IV	ACGT	2 cut(s)	232, 783
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	4 cut(s)	126, 162, 359, 515
HpySE526I	ACGT	2 cut(s)	232, 783
Hsp92II	CATG	8 cut(s)	171, 457, 538, 697, 981, 1054, 1060, 1071
HspAI	GCGC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	57, 69, 268, 349, 863
Lsp1109I	GCAGC	1 cut(s)	937
LweI	GCATC	6 cut(s)	36, 139, 277, 708, 902, 996
MaeI	CTAG	3 cut(s)	24, 333, 1154
MaeII	ACGT	2 cut(s)	232, 783
MaeIII	GTNAC	3 cut(s)	961, 1006, 1022
MalI	GATC	5 cut(s)	59, 71, 270, 351, 865
MboI	GATC	5 cut(s)	57, 69, 268, 349, 863
MboII	GAAGA	9 cut(s)	22, 359, 422, 431, 481, 584, 599, 721, 752
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	6 cut(s)	281, 438, 643, 921, 1000, 1214
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	975
MseI	TTAA	4 cut(s)	384, 441, 551, 1014
MslI	CAYNNNNRTG	3 cut(s)	32, 971, 1055
MspA1I	CMGCKG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	1044
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	977
NdeII	GATC	5 cut(s)	57, 69, 268, 349, 863
NlaIII	CATG	8 cut(s)	171, 457, 538, 697, 981, 1054, 1060, 1071
NlaIV	GGNNCC	3 cut(s)	59, 521, 699
NmeAIII	GCCGAG	1 cut(s)	1116
NspI	RCATGY	3 cut(s)	457, 538, 1054
OliI	CACNNNNGTG	1 cut(s)	971
PciI	ACATGT	1 cut(s)	453
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	2 cut(s)	298, 1094
PflMI	CCANNNNNTGG	2 cut(s)	694, 815
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	1042
PspEI	GGTNACC	1 cut(s)	1022
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	3 cut(s)	59, 521, 699
PspPI	GGNCC	2 cut(s)	697, 1132
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	521, 1055
RsaNI	GTAC	2 cut(s)	520, 1054
RseI	CAYNNNNRTG	3 cut(s)	32, 971, 1055
SaqAI	TTAA	4 cut(s)	384, 441, 551, 1014
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	5 cut(s)	57, 69, 268, 349, 863
Sau96I	GGNCC	2 cut(s)	697, 1132
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	1044
SfaNI	GCATC	6 cut(s)	36, 139, 277, 708, 902, 996
SinI	GGWCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	3 cut(s)	32, 971, 1055
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SpeI	ACTAGT	1 cut(s)	1153
Sse9I	AATT	6 cut(s)	281, 438, 643, 921, 1000, 1214
SsiI	CCGC	2 cut(s)	220, 1091
SspMI	CTAG	3 cut(s)	24, 333, 1154
StyD4I	CCNGG	1 cut(s)	1042
StyI	CCWWGG	1 cut(s)	977
TaaI	ACNGT	3 cut(s)	463, 547, 889
TaiI	ACGT	2 cut(s)	235, 786
TaqI	TCGA	1 cut(s)	660
TasI	AATT	6 cut(s)	281, 438, 643, 921, 1000, 1214
TatI	WGTACW	1 cut(s)	1053
TfiI	GAWTC	2 cut(s)	298, 1094
Tru1I	TTAA	4 cut(s)	384, 441, 551, 1014
Tru9I	TTAA	4 cut(s)	384, 441, 551, 1014
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	1 cut(s)	950
TspDTI	ATGAA	3 cut(s)	180, 244, 423
TspRI	CASTG	1 cut(s)	586
Van91I	CCANNNNNTGG	2 cut(s)	694, 815
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	1 cut(s)	1214
XceI	RCATGY	3 cut(s)	457, 538, 1054
XspI	CTAG	3 cut(s)	24, 333, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.