Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005862

Physical Location & Seq

Genomic Coordinates Forward (+)

24757595 .. 24760540

Gene Structure 2946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G262000.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCTTCCACTTACTGCTGTTCACTTTCACTGCCGCCCATTCCCAACCCACCAACCCTCAACAAAACCCAACTCTTTCCCACAAAACTTTACAGCCCAAACCCGTTTTCTCACTCAAATTTTACACTTCGGAGTCCCAGAATCCGAGCTACCAACTTCTCCTCGTCCACCACAGTCCAAGATGAAGCTCAAAAGCTTAGTGACGAAGCCATGAGCATTGACAATCTTCGCCGCTTCGTTAACCTCAACTTGGGCAAGTGGAATGGTTCCTTCTTTCAATTTGATGCTGTTGGGAATCTATTGCATAAAGTGAATACGAAGCTGTCAGCTAGCTCTTACGGGGAAGATGAACTCATCAGTCTCATTCAAACATTATATATTGAACAAGCTTCATCAAGCACATCTGTTTCTGGATATGATGATGATGAGCTGGAATGGGCAGAATACAAAATTAAAGAAACCAACATGTTCACTGCGGACAAATATCAACAGATTGGATTCTTCCCCAATGAGAAAGCATTTTCTCTGAGGTACCAGACCGCTGGCATGCTAGAAACTGTGCTAAGACAAGGGGTTCTTGGGGAAGATGACACTGGTGAAGACTCACCAAAAAATCTAAAGCTTCCTTCCCGTCGGCCTTCTATTGTATGTGAGAGTTGTTTGTATTCACTAGAGAAAGATATGCGAGTAAGAGCATTCCATATCATGGACCCAAAAGGCATTGTTGAAATGCTTCTCATCTTCCTTGAGGAAAGAGGAGATGGAGTGCTTCTTCCTCCTTCCCTCGACAATAATATGGAAAACAAAGACAGGATTGTTCCATTTCTTGGTAAGTGGAAAGGTCATTCCATAACAAAACGAAGTGGTGTTTATGGATCAACAATGGCTGAAGCTGAAACAGTAACATCACTTGAGATGGATGATAAGGGCCAAATTATTCAGGGCATCACTTCCACCTCTGCTGCGGGTGATGTTACCACTAATGTGCCGTGGACGGGTATCAAGTCAGACAATTTGGTTACTTTTGCTGGAGGTTACCAGATGACTCTCTTGCCTGGAGGTATGTACATGGGATGCCCATGTGATGTAGGAAAAAATGTTGCAGAATCCTTGTCATTCCATTTGGAGTTCTGTTGGCTTGAGGGCCCTGGAAAGAGACAGAGACTGGTTCGCACTTACGATGTCGAAGGTTTGGCGGTCTCAACAACATACTTCTATGAGACAAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3598 WRKY

Protein Analysis

411

Amino Acids

45.77

Weight (kDa)

5.19

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29185 AT3G29185
fragaria_vesca	FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790
malus_domestica	MD09G1056700.v1.1 MD17G1054200.v1.1
prunus_persica	Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1
pyrus_communis	pycom111g04750 pycom17g05190
rosa_chinensis	RchiOBHm_Chr2g0166981
rosa_laevigata	RLG00000021686
rosa_multiflora	Rmu_sc0002735.1_g000026 Rmu_sc0010966.1_g000002 Rmu_sc0025421.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083840
rosa_rugosa	Rorug02G0527100
rosa_samantha	Rh2AG594000 Rh2BG605500 Rh2CG576400 Rh2DG617000
rosa_wichuraiana	Rw2G049460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	531
AccB7I	CCANNNNNTGG	2 cut(s)	706, 827
AciI	CCGC	6 cut(s)	35, 232, 476, 540, 965, 1196
AclWI	GGATC	1 cut(s)	883
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	909
AfaI	GTAC	2 cut(s)	533, 1067
AfiI	CCNNNNNNNGG	4 cut(s)	250, 706, 827, 995
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	4 cut(s)	278, 368, 383, 728
AjnI	CCWGG	2 cut(s)	1054, 1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AleI	CACNNNNGTG	1 cut(s)	983
Alw26I	GTCTC	5 cut(s)	365, 1150, 1156, 1204, 1214
AlwI	GGATC	1 cut(s)	883
AlwNI	CAGNNNCTG	1 cut(s)	1165
AoxI	GGCC	3 cut(s)	635, 928, 1144
ApaI	GGGCCC	1 cut(s)	1148
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	732
Asp718I	GGTACC	1 cut(s)	531
AspS9I	GGNCC	4 cut(s)	709, 928, 1144, 1145
AsuHPI	GGTGA	3 cut(s)	597, 608, 980
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	1148
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	1148
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	949
BccI	CCATC	2 cut(s)	755, 910
BceAI	ACGGC	1 cut(s)	973
BciT130I	CCWGG	2 cut(s)	1056, 1149
BcoDI	GTCTC	5 cut(s)	365, 1150, 1156, 1204, 1214
BfaI	CTAG	3 cut(s)	330, 551, 671
BisI	GCNGC	3 cut(s)	35, 232, 963
BlsI	GCNGC	3 cut(s)	36, 233, 964
Bme1390I	CCNGG	2 cut(s)	1056, 1149
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	4 cut(s)	709, 928, 1144, 1145
BmiI	GGNNCC	4 cut(s)	268, 533, 711, 1146
BmrFI	CCNGG	2 cut(s)	1056, 1149
BmsI	GCATC	3 cut(s)	274, 954, 1064
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	2 cut(s)	1050, 1077
BpuEI	CTTGAG	3 cut(s)	767, 932, 1160
BsaI	GGTCTC	1 cut(s)	1204
BsaJI	CCNNGG	2 cut(s)	989, 1147
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 706, 827, 995
Bse1I	ACTGG	2 cut(s)	598, 1170
BseBI	CCWGG	2 cut(s)	1056, 1149
BseDI	CCNNGG	2 cut(s)	989, 1147
BseGI	GGATG	2 cut(s)	925, 1079
BseLI	CCNNNNNNNGG	4 cut(s)	250, 706, 827, 995
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	2 cut(s)	598, 1170
BseRI	GAGGAG	2 cut(s)	151, 771
BseSI	GKGCMC	1 cut(s)	1148
BseXI	GCAGC	1 cut(s)	949
BshFI	GGCC	3 cut(s)	637, 930, 1146
BshNI	GGYRCC	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	4 cut(s)	250, 706, 827, 995
BsmAI	GTCTC	5 cut(s)	365, 1150, 1156, 1204, 1214
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	637, 930, 1146
Bso31I	GGTCTC	1 cut(s)	1204
Bsp120I	GGGCCC	1 cut(s)	1144
Bsp1286I	GDGCHC	1 cut(s)	1148
Bsp1407I	TGTACA	1 cut(s)	1065
Bsp143I	GATC	1 cut(s)	875
BspACI	CCGC	6 cut(s)	35, 232, 476, 540, 965, 1196
BspANI	GGCC	3 cut(s)	637, 930, 1146
BspCNI	CTCAG	1 cut(s)	519
BspLI	GGNNCC	4 cut(s)	268, 533, 711, 1146
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	1204
BsrGI	TGTACA	1 cut(s)	1065
BsrI	ACTGG	2 cut(s)	598, 1170
BssECI	CCNNGG	2 cut(s)	989, 1147
BssMI	GATC	1 cut(s)	875
Bst2UI	CCWGG	2 cut(s)	1056, 1149
Bst4CI	ACNGT	3 cut(s)	175, 559, 901
BstAUI	TGTACA	1 cut(s)	1065
BstC8I	GCNNGC	3 cut(s)	331, 544, 548
BstDEI	CTNAG	3 cut(s)	197, 527, 563
BstDSI	CCRYGG	1 cut(s)	989
BstEII	GGTNACC	1 cut(s)	1034
BstF5I	GGATG	2 cut(s)	925, 1079
BstKTI	GATC	1 cut(s)	878
BstMAI	GTCTC	5 cut(s)	365, 1150, 1156, 1204, 1214
BstMBI	GATC	1 cut(s)	875
BstNI	CCWGG	2 cut(s)	1056, 1149
BstNSI	RCATGY	2 cut(s)	469, 550
BstPI	GGTNACC	1 cut(s)	1034
BstSCI	CCNGG	2 cut(s)	1054, 1147
BstSLI	GKGCMC	1 cut(s)	1148
BstV1I	GCAGC	1 cut(s)	949
BstV2I	GAAGAC	1 cut(s)	606
BstXI	CCANNNNNNTGG	1 cut(s)	542
BsuRI	GGCC	3 cut(s)	637, 930, 1146
BtgI	CCRYGG	1 cut(s)	989
BtsCI	GGATG	2 cut(s)	925, 1079
BtsI	GCAGTG	2 cut(s)	29, 471
BtsIMutI	CAGTG	3 cut(s)	29, 471, 591
Cac8I	GCNNGC	3 cut(s)	331, 544, 548
CaiI	CAGNNNCTG	1 cut(s)	1165
Cfr13I	GGNCC	4 cut(s)	709, 928, 1144, 1145
Csp6I	GTAC	2 cut(s)	532, 1066
CviAII	CATG	6 cut(s)	211, 466, 547, 706, 1069, 1080
CviQI	GTAC	2 cut(s)	532, 1066
DdeI	CTNAG	3 cut(s)	197, 527, 563
DpnI	GATC	1 cut(s)	877
DpnII	GATC	1 cut(s)	875
Eco24I	GRGCYC	1 cut(s)	1148
Eco31I	GGTCTC	1 cut(s)	1204
Eco47I	GGWCC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	909
Eco91I	GGTNACC	1 cut(s)	1034
EcoO109I	RGGNCCY	2 cut(s)	1144, 1145
EcoO65I	GGTNACC	1 cut(s)	1034
EcoRII	CCWGG	2 cut(s)	1054, 1147
EcoT38I	GRGCYC	1 cut(s)	1148
FaeI	CATG	6 cut(s)	214, 469, 550, 709, 1072, 1083
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	6 cut(s)	210, 465, 546, 705, 1068, 1079
FauI	CCCGC	1 cut(s)	958
Fnu4HI	GCNGC	3 cut(s)	35, 232, 963
FokI	GGATG	2 cut(s)	932, 1086
FriOI	GRGCYC	1 cut(s)	1148
Fsp4HI	GCNGC	3 cut(s)	35, 232, 963
FspBI	CTAG	3 cut(s)	330, 551, 671
GluI	GCNGC	3 cut(s)	35, 232, 963
GsuI	CTGGAG	2 cut(s)	1050, 1077
HaeIII	GGCC	3 cut(s)	637, 930, 1146
Hin1II	CATG	6 cut(s)	214, 469, 550, 709, 1072, 1083
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	3 cut(s)	194, 387, 620
HinfI	GANTC	7 cut(s)	133, 141, 295, 498, 602, 1045, 1106
HpaI	GTTAAC	1 cut(s)	241
HphI	GGTGA	3 cut(s)	597, 608, 980
Hpy166II	GTNNAC	5 cut(s)	23, 168, 241, 471, 993
Hpy188I	TCNGA	4 cut(s)	132, 146, 528, 1009
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	5 cut(s)	23, 168, 241, 471, 993
Hpy99I	CGWCG	1 cut(s)	636
HpyAV	CCTTC	5 cut(s)	280, 636, 648, 789, 1181
HpyCH4III	ACNGT	3 cut(s)	175, 559, 901
HpyCH4V	TGCA	2 cut(s)	304, 1103
HpyF3I	CTNAG	3 cut(s)	197, 527, 563
Hsp92II	CATG	6 cut(s)	214, 469, 550, 709, 1072, 1083
KpnI	GGTACC	1 cut(s)	535
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	875
Lsp1109I	GCAGC	1 cut(s)	949
LweI	GCATC	3 cut(s)	274, 954, 1064
MaeI	CTAG	3 cut(s)	330, 551, 671
MaeIII	GTNAC	5 cut(s)	200, 901, 973, 1018, 1034
MalI	GATC	1 cut(s)	877
MboI	GATC	1 cut(s)	875
MboII	GAAGA	7 cut(s)	218, 356, 493, 596, 611, 733, 764
MhlI	GDGCHC	1 cut(s)	1148
MluCI	AATT	5 cut(s)	118, 278, 450, 933, 1012
MlyI	GAGTC	3 cut(s)	142, 596, 1039
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	2 cut(s)	240, 453
MslI	CAYNNNNRTG	1 cut(s)	983
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	1056, 1149
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	2 cut(s)	1056, 1149
NdeII	GATC	1 cut(s)	875
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	6 cut(s)	214, 469, 550, 709, 1072, 1083
NlaIV	GGNNCC	4 cut(s)	268, 533, 711, 1146
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	2 cut(s)	469, 550
OliI	CACNNNNGTG	1 cut(s)	983
PaeI	GCATGC	1 cut(s)	550
PciI	ACATGT	1 cut(s)	465
PctI	GAATGC	1 cut(s)	695
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	141, 295, 498, 1106
PflMI	CCANNNNNTGG	2 cut(s)	706, 827
PkrI	GCNGC	3 cut(s)	36, 233, 964
PleI	GAGTC	3 cut(s)	141, 596, 1039
PpsI	GAGTC	3 cut(s)	141, 596, 1039
PscI	ACATGT	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	1054, 1147
PspEI	GGTNACC	1 cut(s)	1034
PspGI	CCWGG	2 cut(s)	1054, 1147
PspN4I	GGNNCC	4 cut(s)	268, 533, 711, 1146
PspOMI	GGGCCC	1 cut(s)	1144
PspPI	GGNCC	4 cut(s)	709, 928, 1144, 1145
PstNI	CAGNNNCTG	1 cut(s)	1165
RsaI	GTAC	2 cut(s)	533, 1067
RsaNI	GTAC	2 cut(s)	532, 1066
RseI	CAYNNNNRTG	1 cut(s)	983
SaqAI	TTAA	2 cut(s)	240, 453
SatI	GCNGC	3 cut(s)	35, 232, 963
Sau3AI	GATC	1 cut(s)	875
Sau96I	GGNCC	4 cut(s)	709, 928, 1144, 1145
SchI	GAGTC	3 cut(s)	142, 596, 1039
ScrFI	CCNGG	2 cut(s)	1056, 1149
SduI	GDGCHC	1 cut(s)	1148
SfaNI	GCATC	3 cut(s)	274, 954, 1064
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	3 cut(s)	746, 911, 1139
SmoI	CTYRAG	3 cut(s)	746, 911, 1139
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	5 cut(s)	118, 278, 450, 933, 1012
SsiI	CCGC	6 cut(s)	35, 232, 476, 540, 965, 1196
SspMI	CTAG	3 cut(s)	330, 551, 671
StyD4I	CCNGG	2 cut(s)	1054, 1147
TaaI	ACNGT	3 cut(s)	175, 559, 901
TaqI	TCGA	2 cut(s)	786, 1185
TasI	AATT	5 cut(s)	118, 278, 450, 933, 1012
TatI	WGTACW	1 cut(s)	1065
TauI	GCSGC	2 cut(s)	37, 234
TfiI	GAWTC	4 cut(s)	141, 295, 498, 1106
Tru1I	TTAA	2 cut(s)	240, 453
Tru9I	TTAA	2 cut(s)	240, 453
TscAI	CASTG	3 cut(s)	36, 478, 598
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	962
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	198, 363, 381
TspRI	CASTG	3 cut(s)	36, 478, 598
Van91I	CCANNNNNTGG	2 cut(s)	706, 827
VpaK11BI	GGWCC	1 cut(s)	709
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	2 cut(s)	469, 550
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	3 cut(s)	330, 551, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.