Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005862

Physical Location & Seq

Genomic Coordinates Forward (+)

82715861 .. 82718127

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG605500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCTTCCACTTACAGCTGTTGTTCACTTTCACTCCCTCCCATACCCAATTCGCTAAACCTCAACAAAACCCAACTCTTTCCCACAAGGCATTACACCCCAAACCCGTTTTCCGGCTCCATTTCCACACCCGGAATCCGAGCTACGAACTCATCATCGCCGTCTACGGCAGTTCAAGAAGCTCTCAAGGCCAGCGAGGAAGCAATGAGCATTGAGAATCTTCAGAGCTTCGTTAAAGTCAACTTGGGCAAGTGGAATGGTTCCTTCTTTCAATTTGATGCTTTCGGGAATCTGTTGCATAATGTGAATACCAAGCTTTCGGCTAGTTCTTATGGAGAAGATCAACTCCTCAGTCTCATTCAAACATTATATATTAAACAAGCTACATCAAGTGGATATGAAGATGAGGAAGAATGGGCAGAATACAAAATTAAGGAAACCAACATGTTTACTGTGGACAAATATCAACAGATTGGCTTCTTCCCCAATGAGAGAGCATTTTCTCTAAGGTACCAGACGGCTGGCATGTTAGAAACTGTGTTAAGACAAGGGGTTCTTGGGGAAGATGACACTGGTGAAGAACATCCAAAAAATCTAAAGCTTCCCTCCCGTCAGCCATCTATTGTATGTGAGAGTTGTCTATATTCACTCGAAAAAGATATGCGAGTAAGAGCATTCCATATCATGGACCCAAAAGGTATTAGCGAGATGCTTCTTATCTTCCTTGAGGAAAGAGGTGATGGGGTGCTTCTTCCTCCTTCCATTGACAATACTGTGGAAAGCACAGATAGGATTTTGCCATTTCTTGGTAAGTGGAAAGGTCATTCCATAACAAAAAGAAGTGGTGTTTATGGATCAACAATGGCTGAAGCTGATACTGTAGCGTCGCTTGAAATAGATGACAACGGCCAAATTATTCAGGACATTACTTCCACCTCTGCTGCTGGTGATGTTACCACTAATGTGCCGTGGACGGGCATCAAGTCAGACAATTTGGTTACGTTTAATGGAGGTTACCAGATGATACTATTGCCTGGTGGCATGTACATGGGATGCCCATGTGATGTAGGCAAGAATGTTGCGGAATCCATATCATTCCATTTGGAGTTCTGTTGGGTTGAGTCCCCCGGCAAGAGACAAAGATTAGTTCGCACTTATGATGTTGAAGGTTTGGCTGTCTCTACAACTTACTTCTATGAGACAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3598 WRKY

Protein Analysis

403

Amino Acids

44.73

Weight (kDa)

4.99

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3598_N	PF12204	72 - 246	2.1e-15	Domain of unknown function (DUF3598), N-terminal
BFA1_C	PF21053	268 - 402	5.6e-13	Biogenesis factor required for ATP synthase 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29185 AT3G29185
fragaria_vesca	FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790
malus_domestica	MD09G1056700.v1.1 MD17G1054200.v1.1
prunus_persica	Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1
pyrus_communis	pycom111g04750 pycom17g05190
rosa_chinensis	RchiOBHm_Chr2g0166981
rosa_laevigata	RLG00000021686
rosa_multiflora	Rmu_sc0002735.1_g000026 Rmu_sc0010966.1_g000002 Rmu_sc0025421.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083840
rosa_rugosa	Rorug02G0527100
rosa_samantha	Rh2AG594000 Rh2BG605500 Rh2CG576400 Rh2DG617000
rosa_wichuraiana	Rw2G049460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	510
AccB7I	CCANNNNNTGG	2 cut(s)	685, 806
AccI	GTMKAC	1 cut(s)	164
AciI	CCGC	1 cut(s)	1082
AclWI	GGATC	1 cut(s)	862
AcoI	YGGCCR	1 cut(s)	907
AcsI	RAATTY	1 cut(s)	1205
AcuI	CTGAAG	2 cut(s)	206, 888
AfaI	GTAC	2 cut(s)	512, 1046
AfiI	CCNNNNNNNGG	4 cut(s)	113, 685, 806, 974
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	5 cut(s)	176, 272, 362, 893, 1166
AjnI	CCWGG	1 cut(s)	1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AleI	CACNNNNGTG	1 cut(s)	962
AluBI	AGCT	8 cut(s)	18, 143, 182, 228, 316, 383, 601, 872
AluI	AGCT	8 cut(s)	18, 143, 182, 228, 316, 383, 601, 872
Alw26I	GTCTC	4 cut(s)	359, 1129, 1183, 1193
AlwI	GGATC	1 cut(s)	862
AoxI	GGCC	2 cut(s)	189, 907
ApeKI	GCWGC	1 cut(s)	941
ApoI	RAATTY	1 cut(s)	1205
Asp718I	GGTACC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	688
AsuC2I	CCSGG	2 cut(s)	132, 1128
AsuHPI	GGTGA	3 cut(s)	587, 749, 959
AvaII	GGWCC	1 cut(s)	688
BanI	GGYRCC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	928
BccI	CCATC	2 cut(s)	625, 734
BceAI	ACGGC	5 cut(s)	145, 183, 534, 922, 952
BciT130I	CCWGG	1 cut(s)	1035
BcnI	CCSGG	2 cut(s)	132, 1128
BcoDI	GTCTC	4 cut(s)	359, 1129, 1183, 1193
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	879
BisI	GCNGC	1 cut(s)	942
BlsI	GCNGC	1 cut(s)	943
Bme1390I	CCNGG	3 cut(s)	132, 1035, 1128
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	4 cut(s)	118, 262, 512, 690
BmrFI	CCNGG	3 cut(s)	132, 1035, 1128
BmsI	GCATC	4 cut(s)	268, 699, 987, 1043
BpuEI	CTTGAG	2 cut(s)	170, 746
BpuMI	CCSGG	2 cut(s)	132, 1128
BsaJI	CCNNGG	2 cut(s)	968, 1126
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 685, 806, 974
Bse1I	ACTGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	2 cut(s)	968, 1126
BseGI	GGATG	2 cut(s)	583, 1058
BseLI	CCNNNNNNNGG	4 cut(s)	113, 685, 806, 974
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	928
BshFI	GGCC	2 cut(s)	191, 909
BshNI	GGYRCC	1 cut(s)	510
BsiSI	CCGG	3 cut(s)	114, 132, 1128
BslFI	GGGAC	1 cut(s)	1108
BslI	CCNNNNNNNGG	4 cut(s)	113, 685, 806, 974
BsmAI	GTCTC	4 cut(s)	359, 1129, 1183, 1193
BsmFI	GGGAC	1 cut(s)	1108
BsmI	GAATGC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	191, 909
Bsp1407I	TGTACA	1 cut(s)	1044
Bsp143I	GATC	2 cut(s)	340, 854
BspACI	CCGC	1 cut(s)	1082
BspANI	GGCC	2 cut(s)	191, 909
BspCNI	CTCAG	1 cut(s)	363
BspLI	GGNNCC	4 cut(s)	118, 262, 512, 690
BspPI	GGATC	1 cut(s)	862
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	1044
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	2 cut(s)	968, 1126
BssMI	GATC	2 cut(s)	340, 854
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	4 cut(s)	454, 538, 775, 880
BstAUI	TGTACA	1 cut(s)	1044
BstC8I	GCNNGC	2 cut(s)	193, 523
BstDEI	CTNAG	2 cut(s)	350, 506
BstDSI	CCRYGG	1 cut(s)	968
BstEII	GGTNACC	1 cut(s)	1013
BstF5I	GGATG	2 cut(s)	583, 1058
BstKTI	GATC	2 cut(s)	343, 857
BstMAI	GTCTC	4 cut(s)	359, 1129, 1183, 1193
BstMBI	GATC	2 cut(s)	340, 854
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	3 cut(s)	448, 529, 1045
BstPI	GGTNACC	1 cut(s)	1013
BstSCI	CCNGG	3 cut(s)	130, 1033, 1126
BstSFI	CTRYAG	1 cut(s)	879
BstV1I	GCAGC	1 cut(s)	928
BstXI	CCANNNNNNTGG	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	191, 909
BtgI	CCRYGG	1 cut(s)	968
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	583, 1058
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	2 cut(s)	193, 523
Cfr13I	GGNCC	1 cut(s)	688
CseI	GACGC	1 cut(s)	873
Csp6I	GTAC	2 cut(s)	511, 1045
CviAII	CATG	6 cut(s)	445, 526, 685, 1042, 1048, 1059
CviQI	GTAC	2 cut(s)	511, 1045
DdeI	CTNAG	2 cut(s)	350, 506
DpnI	GATC	2 cut(s)	342, 856
DpnII	GATC	2 cut(s)	340, 854
EaeI	YGGCCR	1 cut(s)	907
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	2 cut(s)	206, 888
Eco91I	GGTNACC	1 cut(s)	1013
EcoO65I	GGTNACC	1 cut(s)	1013
EcoRII	CCWGG	1 cut(s)	1033
FaeI	CATG	6 cut(s)	448, 529, 688, 1045, 1051, 1062
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	1 cut(s)	1108
FatI	CATG	6 cut(s)	444, 525, 684, 1041, 1047, 1058
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	942
FokI	GGATG	2 cut(s)	570, 1065
Fsp4HI	GCNGC	1 cut(s)	942
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	191, 909
HapII	CCGG	3 cut(s)	114, 132, 1128
HgaI	GACGC	1 cut(s)	873
Hin1II	CATG	6 cut(s)	448, 529, 688, 1045, 1051, 1062
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	314, 599
HinfI	GANTC	5 cut(s)	135, 217, 289, 1085, 1121
HpaII	CCGG	3 cut(s)	114, 132, 1128
HphI	GGTGA	3 cut(s)	587, 749, 959
Hpy166II	GTNNAC	6 cut(s)	26, 165, 241, 450, 457, 972
Hpy188I	TCNGA	3 cut(s)	140, 225, 988
Hpy188III	TCNNGA	3 cut(s)	176, 286, 920
Hpy8I	GTNNAC	6 cut(s)	26, 165, 241, 450, 457, 972
Hpy99I	CGWCG	1 cut(s)	889
HpyAV	CCTTC	3 cut(s)	274, 768, 1160
HpyCH4III	ACNGT	4 cut(s)	454, 538, 775, 880
HpyCH4IV	ACGT	1 cut(s)	1001
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	350, 506
HpySE526I	ACGT	1 cut(s)	1001
Hsp92II	CATG	6 cut(s)	448, 529, 688, 1045, 1051, 1062
KpnI	GGTACC	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	340, 854
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	928
LweI	GCATC	4 cut(s)	268, 699, 987, 1043
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	1001
MaeIII	GTNAC	3 cut(s)	952, 997, 1013
MalI	GATC	2 cut(s)	342, 856
MboI	GATC	2 cut(s)	340, 854
MboII	GAAGA	9 cut(s)	212, 350, 413, 422, 472, 575, 590, 712, 743
MluCI	AATT	6 cut(s)	49, 272, 429, 912, 991, 1205
MlyI	GAGTC	1 cut(s)	1130
MseI	TTAA	5 cut(s)	234, 375, 432, 542, 1005
MslI	CAYNNNNRTG	2 cut(s)	962, 1046
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	3 cut(s)	114, 132, 1128
MspR9I	CCNGG	3 cut(s)	132, 1035, 1128
Mva1269I	GAATGC	1 cut(s)	674
MvaI	CCWGG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	2 cut(s)	132, 1128
NdeII	GATC	2 cut(s)	340, 854
NlaIII	CATG	6 cut(s)	448, 529, 688, 1045, 1051, 1062
NlaIV	GGNNCC	4 cut(s)	118, 262, 512, 690
NspI	RCATGY	3 cut(s)	448, 529, 1045
OliI	CACNNNNGTG	1 cut(s)	962
PciI	ACATGT	1 cut(s)	444
PctI	GAATGC	1 cut(s)	674
PfeI	GAWTC	4 cut(s)	135, 217, 289, 1085
PflMI	CCANNNNNTGG	2 cut(s)	685, 806
PkrI	GCNGC	1 cut(s)	943
PleI	GAGTC	1 cut(s)	1129
PpsI	GAGTC	1 cut(s)	1129
PscI	ACATGT	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	1033
PspEI	GGTNACC	1 cut(s)	1013
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	4 cut(s)	118, 262, 512, 690
PspPI	GGNCC	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	18
RsaI	GTAC	2 cut(s)	512, 1046
RsaNI	GTAC	2 cut(s)	511, 1045
RseI	CAYNNNNRTG	2 cut(s)	962, 1046
SaqAI	TTAA	5 cut(s)	234, 375, 432, 542, 1005
SatI	GCNGC	1 cut(s)	942
Sau3AI	GATC	2 cut(s)	340, 854
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	1 cut(s)	1130
ScrFI	CCNGG	3 cut(s)	132, 1035, 1128
SfaNI	GCATC	4 cut(s)	268, 699, 987, 1043
SfcI	CTRYAG	1 cut(s)	879
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	2 cut(s)	962, 1046
SmlI	CTYRAG	2 cut(s)	185, 725
SmoI	CTYRAG	2 cut(s)	185, 725
Sse9I	AATT	6 cut(s)	49, 272, 429, 912, 991, 1205
SsiI	CCGC	1 cut(s)	1082
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	130, 1033, 1126
TaaI	ACNGT	4 cut(s)	454, 538, 775, 880
TaiI	ACGT	1 cut(s)	1004
TaqI	TCGA	1 cut(s)	651
TasI	AATT	6 cut(s)	49, 272, 429, 912, 991, 1205
TatI	WGTACW	1 cut(s)	1044
TfiI	GAWTC	4 cut(s)	135, 217, 289, 1085
Tru1I	TTAA	5 cut(s)	234, 375, 432, 542, 1005
Tru9I	TTAA	5 cut(s)	234, 375, 432, 542, 1005
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	1 cut(s)	941
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	577
Van91I	CCANNNNNTGG	2 cut(s)	685, 806
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	1 cut(s)	1205
XceI	RCATGY	3 cut(s)	448, 529, 1045
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.