Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005862

Physical Location & Seq

Genomic Coordinates Reverse (-)

3750070 .. 3752688

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1056700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTTCCACTTTCTGCTACTCACTTTCACTCCCTCCCATTCCCAACCCACGGAGCCTCAACAAAGTCCAACTCCTACCCACCAACCTTCACACCCCAAACCCCTTTTCTCGCCCCATTTCTACAATCCGGAGCCCCTTAATCCGAGCTTCCAACTCGTCGTCCTCCACCTCAGTTCAAGACGAAGCTCGAAAGCCCAGCGAGGAAGCCATGAGCATCGACAATCTTCGCCGCTTTGTTAAGCTCAACGTGGGCAATTGGCAAGGTTCCTTCTTTCAATTTGATACTGTTGGGAATCTGTTGCATAAAGTGAATACGAAGCTTGCAGCTAGCTCTTATGGGGAAGGTGAACTCATCAGTCTCATTCAAACATTATATATTATGCAGGCTCCATCAAGCACGTCGTTTTCTGAATTAGATGATGAGGTGGAGTGGGCAGAATACAAAATTAAAGAAACCAACATGTTTACTGTGGACAAGTATCAACAGATTGGCTTCTTCCCCGATGAGAAAGCTTTTTCGCTAAGGTACCAGACTGCTGGGATGTTAGAAACTGTGTTAAGACAAGGGGTTCTTGGGGATGATGACACTGGTGAAGAATCACCAAAAAATCTAAAGCTTCCTTCCCGTCGTCCTGCAATTGTATGCGAAAGTTGTCTGCATTCACTAGACAAAGATATGCGAATAAGAGCTTTCCACATCATGGACCCAAAAGGCATTATCGAAATGATTGTCATCTTCCTGGAGGAAAGAGGAGATGGGGCAGTTCTTCCTCCTGCCCTCGACAATAATGTGGAAAACACAGACAGGATTGTGCCATTTCTTGGTACGTGGAAAGGTCACTCAGTAACAAAACGAAGCGGTGTTTATGGATCAACAACGGCTGAAGCTGATACCGTAGCAACACTTGAGATGGATGATAAGGGCCAAGTTATTCAGGGCATCACTTCCACCTCCGCTGCGGGTGATGTTACCACTAATGTGCCTTGGACGGGAATCAAGTTGGACAACTTGATTACTTTCAACGGAGGTTACCAGATGACTCTATTGCCCGGAGGCATGTACATGGGATGCCCATGCGATGTAGGAAACAATGTTGCAGAATCATTATCGTTCCATTTGGAGTTCTGTTGGCTCGAGGGTCCTGCCAAGAGACAGAGACTGGTTCGTACATACGATGTTGAAGGTCAGGCCGTCTCCACAACTTACTTCTACGAGACAAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3598 WRKY

Protein Analysis

410

Amino Acids

45.42

Weight (kDa)

5.17

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3598_N	PF12204	74 - 252	5e-15	Domain of unknown function (DUF3598), N-terminal
BFA1_C	PF21053	274 - 409	1.6e-13	Biogenesis factor required for ATP synthase 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29185 AT3G29185
fragaria_vesca	FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790
malus_domestica	MD09G1056700.v1.1 MD17G1054200.v1.1
prunus_persica	Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1
pyrus_communis	pycom111g04750 pycom17g05190
rosa_chinensis	RchiOBHm_Chr2g0166981
rosa_laevigata	RLG00000021686
rosa_multiflora	Rmu_sc0002735.1_g000026 Rmu_sc0010966.1_g000002 Rmu_sc0025421.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083840
rosa_rugosa	Rorug02G0527100
rosa_samantha	Rh2AG594000 Rh2BG605500 Rh2CG576400 Rh2DG617000
rosa_wichuraiana	Rw2G049460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	2 cut(s)	703, 824
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	4 cut(s)	232, 861, 957, 962
AclWI	GGATC	1 cut(s)	880
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	4 cut(s)	530, 829, 1064, 1171
AfiI	CCNNNNNNNGG	4 cut(s)	51, 703, 824, 992
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	5 cut(s)	179, 278, 368, 1024, 1184
AjiI	CACGTC	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	741
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AleI	CACNNNNGTG	1 cut(s)	980
Alw26I	GTCTC	5 cut(s)	365, 1147, 1153, 1201, 1211
AlwI	GGATC	1 cut(s)	880
AlwNI	CAGNNNCTG	1 cut(s)	1162
Ama87I	CYCGRG	1 cut(s)	1136
Aor13HI	TCCGGA	1 cut(s)	129
AoxI	GGCC	2 cut(s)	925, 1191
ApeKI	GCWGC	2 cut(s)	326, 959
ArsI	GACNNNNNNTTYG	2 cut(s)	717, 749
Asp718I	GGTACC	1 cut(s)	528
AspS9I	GGNCC	3 cut(s)	706, 925, 1142
AsuC2I	CCSGG	1 cut(s)	1053
AsuHPI	GGTGA	4 cut(s)	359, 594, 605, 977
AsuNHI	GCTAGC	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	1136
AvaII	GGWCC	2 cut(s)	706, 1142
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	338, 946
BccI	CCATC	3 cut(s)	400, 752, 907
BceAI	ACGGC	2 cut(s)	897, 1178
BcgI	CGANNNNNNTGC	2 cut(s)	1127, 1161
BciT130I	CCWGG	1 cut(s)	743
BcnI	CCSGG	1 cut(s)	1053
BcoDI	GTCTC	5 cut(s)	365, 1147, 1153, 1201, 1211
BfaI	CTAG	2 cut(s)	330, 668
BisI	GCNGC	3 cut(s)	232, 327, 960
BlsI	GCNGC	3 cut(s)	233, 328, 961
Bme1390I	CCNGG	2 cut(s)	743, 1053
Bme18I	GGWCC	2 cut(s)	706, 1142
BmeT110I	CYCGRG	1 cut(s)	1136
BmgBI	CACGTC	1 cut(s)	402
BmgT120I	GGNCC	3 cut(s)	706, 925, 1142
BmiI	GGNNCC	7 cut(s)	56, 134, 268, 390, 530, 708, 1143
BmrFI	CCNGG	2 cut(s)	743, 1053
BmsI	GCATC	3 cut(s)	225, 951, 1061
BmtI	GCTAGC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	1053
BsaAI	YACGTR	1 cut(s)	831
BsaBI	GATNNNNATC	1 cut(s)	734
BsaJI	CCNNGG	2 cut(s)	50, 986
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 703, 824, 992
Bse1I	ACTGG	2 cut(s)	595, 1167
Bse8I	GATNNNNATC	1 cut(s)	734
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	743
BseDI	CCNNGG	2 cut(s)	50, 986
BseGI	GGATG	4 cut(s)	549, 586, 922, 1076
BseJI	GATNNNNATC	1 cut(s)	734
BseLI	CCNNNNNNNGG	4 cut(s)	51, 703, 824, 992
BseMII	CTCAG	2 cut(s)	186, 858
BseNI	ACTGG	2 cut(s)	595, 1167
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	2 cut(s)	338, 946
BseYI	CCCAGC	2 cut(s)	197, 539
BshFI	GGCC	2 cut(s)	927, 1193
BshNI	GGYRCC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	1136
BsiSI	CCGG	2 cut(s)	130, 1053
BslI	CCNNNNNNNGG	4 cut(s)	51, 703, 824, 992
BsmAI	GTCTC	5 cut(s)	365, 1147, 1153, 1201, 1211
BsmBI	CGTCTC	1 cut(s)	1201
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	2 cut(s)	927, 1193
BsoBI	CYCGRG	1 cut(s)	1136
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	1 cut(s)	872
BspACI	CCGC	4 cut(s)	232, 861, 957, 962
BspANI	GGCC	2 cut(s)	927, 1193
BspCNI	CTCAG	2 cut(s)	185, 857
BspEI	TCCGGA	1 cut(s)	129
BspLI	GGNNCC	7 cut(s)	56, 134, 268, 390, 530, 708, 1143
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	2 cut(s)	595, 1167
BssECI	CCNNGG	2 cut(s)	50, 986
BssMI	GATC	1 cut(s)	872
BssT1I	CCWWGG	1 cut(s)	986
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	4 cut(s)	289, 472, 556, 898
BstAUI	TGTACA	1 cut(s)	1062
BstBAI	YACGTR	1 cut(s)	831
BstC8I	GCNNGC	3 cut(s)	324, 331, 387
BstDEI	CTNAG	3 cut(s)	172, 524, 844
BstDSI	CCRYGG	1 cut(s)	50
BstEII	GGTNACC	1 cut(s)	1031
BstF5I	GGATG	4 cut(s)	549, 586, 922, 1076
BstKTI	GATC	1 cut(s)	875
BstMAI	GTCTC	5 cut(s)	365, 1147, 1153, 1201, 1211
BstMBI	GATC	1 cut(s)	872
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	2 cut(s)	466, 1063
BstPI	GGTNACC	1 cut(s)	1031
BstSCI	CCNGG	2 cut(s)	741, 1051
BstV1I	GCAGC	2 cut(s)	338, 946
BstXI	CCANNNNNNTGG	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	927, 1193
BtgI	CCRYGG	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	1095
BtrI	CACGTC	1 cut(s)	402
BtsCI	GGATG	4 cut(s)	549, 586, 922, 1076
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	324, 331, 387
CaiI	CAGNNNCTG	1 cut(s)	1162
Cfr13I	GGNCC	3 cut(s)	706, 925, 1142
Csp6I	GTAC	4 cut(s)	529, 828, 1063, 1170
CviAII	CATG	6 cut(s)	211, 463, 703, 1060, 1066, 1077
CviQI	GTAC	4 cut(s)	529, 828, 1063, 1170
DdeI	CTNAG	3 cut(s)	172, 524, 844
DpnI	GATC	1 cut(s)	874
DpnII	GATC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	986
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	706, 1142
Eco57I	CTGAAG	1 cut(s)	906
Eco88I	CYCGRG	1 cut(s)	1136
Eco91I	GGTNACC	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoO65I	GGTNACC	1 cut(s)	1031
EcoRII	CCWGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	986
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	986
Esp3I	CGTCTC	1 cut(s)	1201
FaeI	CATG	6 cut(s)	214, 466, 706, 1063, 1069, 1080
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FatI	CATG	6 cut(s)	210, 462, 702, 1059, 1065, 1076
FauI	CCCGC	1 cut(s)	955
Fnu4HI	GCNGC	3 cut(s)	232, 327, 960
FokI	GGATG	4 cut(s)	556, 593, 929, 1083
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	232, 327, 960
FspBI	CTAG	2 cut(s)	330, 668
GluI	GCNGC	3 cut(s)	232, 327, 960
GsaI	CCCAGC	2 cut(s)	201, 543
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	2 cut(s)	927, 1193
HapII	CCGG	2 cut(s)	130, 1053
Hin1II	CATG	6 cut(s)	214, 466, 706, 1063, 1069, 1080
HindIII	AAGCTT	3 cut(s)	320, 513, 617
HinfI	GANTC	5 cut(s)	295, 599, 996, 1042, 1103
HpaII	CCGG	2 cut(s)	130, 1053
HphI	GGTGA	4 cut(s)	359, 594, 605, 977
Hpy166II	GTNNAC	3 cut(s)	350, 468, 475
Hpy188I	TCNGA	2 cut(s)	146, 412
Hpy188III	TCNNGA	2 cut(s)	130, 179
Hpy8I	GTNNAC	3 cut(s)	350, 468, 475
Hpy99I	CGWCG	3 cut(s)	163, 406, 633
HpyAV	CCTTC	5 cut(s)	98, 280, 338, 633, 1178
HpyCH4III	ACNGT	4 cut(s)	289, 472, 556, 898
HpyCH4IV	ACGT	3 cut(s)	249, 401, 830
HpyCH4V	TGCA	6 cut(s)	304, 326, 385, 638, 661, 1100
HpyF3I	CTNAG	3 cut(s)	172, 524, 844
HpySE526I	ACGT	3 cut(s)	249, 401, 830
Hsp92II	CATG	6 cut(s)	214, 466, 706, 1063, 1069, 1080
Kpn2I	TCCGGA	1 cut(s)	129
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	872
LmnI	GCTCC	3 cut(s)	54, 132, 394
Lsp1109I	GCAGC	2 cut(s)	338, 946
LweI	GCATC	3 cut(s)	225, 951, 1061
MaeI	CTAG	2 cut(s)	330, 668
MaeII	ACGT	3 cut(s)	249, 401, 830
MaeIII	GTNAC	4 cut(s)	839, 847, 970, 1031
MalI	GATC	1 cut(s)	874
MboI	GATC	1 cut(s)	872
MboII	GAAGA	5 cut(s)	218, 490, 608, 730, 761
MfeI	CAATTG	2 cut(s)	256, 639
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	5 cut(s)	256, 278, 413, 447, 639
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	3 cut(s)	94, 177, 984
MroI	TCCGGA	1 cut(s)	129
MseI	TTAA	4 cut(s)	140, 240, 450, 560
MslI	CAYNNNNRTG	2 cut(s)	980, 1064
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	2 cut(s)	130, 1053
MspR9I	CCNGG	2 cut(s)	743, 1053
MunI	CAATTG	2 cut(s)	256, 639
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	743
NciI	CCSGG	1 cut(s)	1053
NdeII	GATC	1 cut(s)	872
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	6 cut(s)	214, 466, 706, 1063, 1069, 1080
NlaIV	GGNNCC	7 cut(s)	56, 134, 268, 390, 530, 708, 1143
NmuCI	GTSAC	1 cut(s)	839
NspI	RCATGY	2 cut(s)	466, 1063
OliI	CACNNNNGTG	1 cut(s)	980
PaeR7I	CTCGAG	1 cut(s)	1136
PciI	ACATGT	1 cut(s)	462
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	4 cut(s)	295, 599, 996, 1103
PflMI	CCANNNNNTGG	2 cut(s)	703, 824
PfoI	TCCNGGA	1 cut(s)	741
PkrI	GCNGC	3 cut(s)	233, 328, 961
PleI	GAGTC	1 cut(s)	1036
PpsI	GAGTC	1 cut(s)	1036
Ppu21I	YACGTR	1 cut(s)	831
PpuMI	RGGWCCY	1 cut(s)	1142
PscI	ACATGT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	1142
Psp6I	CCWGG	1 cut(s)	741
PspEI	GGTNACC	1 cut(s)	1031
PspFI	CCCAGC	2 cut(s)	197, 539
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	7 cut(s)	56, 134, 268, 390, 530, 708, 1143
PspPI	GGNCC	3 cut(s)	706, 925, 1142
PspPPI	RGGWCCY	1 cut(s)	1142
PspXI	VCTCGAGB	1 cut(s)	1136
PstNI	CAGNNNCTG	1 cut(s)	1162
RsaI	GTAC	4 cut(s)	530, 829, 1064, 1171
RsaNI	GTAC	4 cut(s)	529, 828, 1063, 1170
RseI	CAYNNNNRTG	2 cut(s)	980, 1064
SaqAI	TTAA	4 cut(s)	140, 240, 450, 560
SatI	GCNGC	3 cut(s)	232, 327, 960
Sau3AI	GATC	1 cut(s)	872
Sau96I	GGNCC	3 cut(s)	706, 925, 1142
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	2 cut(s)	743, 1053
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	3 cut(s)	225, 951, 1061
Sfr274I	CTCGAG	1 cut(s)	1136
SinI	GGWCC	2 cut(s)	706, 1142
SlaI	CTCGAG	1 cut(s)	1136
SmiMI	CAYNNNNRTG	2 cut(s)	980, 1064
SmlI	CTYRAG	2 cut(s)	908, 1136
SmoI	CTYRAG	2 cut(s)	908, 1136
Sse9I	AATT	5 cut(s)	256, 278, 413, 447, 639
SsiI	CCGC	4 cut(s)	232, 861, 957, 962
SspMI	CTAG	2 cut(s)	330, 668
StyD4I	CCNGG	2 cut(s)	741, 1051
StyI	CCWWGG	1 cut(s)	986
TaaI	ACNGT	4 cut(s)	289, 472, 556, 898
TaiI	ACGT	3 cut(s)	252, 404, 833
TaqI	TCGA	5 cut(s)	190, 219, 723, 783, 1137
TasI	AATT	5 cut(s)	256, 278, 413, 447, 639
TatI	WGTACW	1 cut(s)	1062
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	4 cut(s)	295, 599, 996, 1103
Tru1I	TTAA	4 cut(s)	140, 240, 450, 560
Tru9I	TTAA	4 cut(s)	140, 240, 450, 560
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	839
TseI	GCWGC	2 cut(s)	326, 959
Tsp45I	GTSAC	1 cut(s)	839
TspGWI	ACGGA	2 cut(s)	67, 1041
TspRI	CASTG	1 cut(s)	595
Van91I	CCANNNNNTGG	2 cut(s)	703, 824
VpaK11BI	GGWCC	2 cut(s)	706, 1142
XceI	RCATGY	2 cut(s)	466, 1063
XhoI	CTCGAG	1 cut(s)	1136
XspI	CTAG	2 cut(s)	330, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.