Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005862

Physical Location & Seq

Genomic Coordinates Reverse (-)

3595640 .. 3597808

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g05190.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTTCCACTTACTGCTGCTCACTTTCACTCCCTCCCATCCCCAACCCACCAAACCTCAACAAAATCCAACTCCTACCCACCAACCTTTACACGACGAACCCGTTTTCTCGCTCCATTTCTACAATTCGGAGCCCCGGAATCCGAGCTTCCAACTCGTCGTCTTCCACCGCAGTACAAGATGAAGCTCGAAAGCCCAGCGAGGAAGCAATGAGCATCGACAATCTTTGCCGCTTTGTTAACCTCACCGTGGGAAATTGGCAAGGTTCCTTCTTTCAATTTGATACTGTTGGGAATCTGTTGCATAAAGTGAATACAAAGCTTGCAGCTAGCTCTTATGGGGAAGATGAACTCATCAGTCTCATTCAAACATTATATATTAAACAAGCTCCATCAAGCAATTCATTTTCTGAATTAGATGACGAGGTGGAGTGGGTGGAGTACAAAATTAAAGAAACGAACATGTTCACGGTGGACAAGTATCAGCAGATTGGCTTCTTCCCCAATGAGAAAGCATTTTCGCTAAGGTACCAGACGGCTGGCATGTTAGAAACAGTGCTGAGACAGGGCGTTCTTGGGGAAGATGACACCGGTGAAGAATCACCAAAAAATCTAAAGCTTCCTTCCCGTCGTCCTGCTATTGTATGTGAAAGTTGTCTGCATTCACTAGAGAAAGATATGCGAGTAAGAGCTTTCCACATCATGGACCCAAAAGGCATTATCGAAATGATTCTCATCTTCCTGGAGGAAAGAGGAGATGGGGTAGTTCTTCCTCCTGCCCTCGACAATAACATGGAAAAGACAGACAGGATTGTGCCATTTCTTGGTACGTGGAAAGGTCACTCCGTAACAAAACGAAGTGGTGTTTATGGATCAACAATGGCTGAAGCTGATATAGTAGCAACACTTGAGATGGATGATAACGGCCACGTTATTCAGGGCATCACTTCCACCTCCGCTGCGGGTGATGTCACAACTAGTGTGCCTTGGACGGGGATCAAGTCGGACAGCTTGATTACTTTCAACGGAGGTTACCAGATGACTCTATTGCCTGGAGGCATGTACGTGGGATGCCCGTGCGATGTAGGAAACAATGTTGCAGAATCATTGTCGTTCCATTTGGAGTTCTGTTGGCTTGAGGGTCCTGGCAAGAGACAGAGACTGGTTCGCACTTACGATGTTGAAGGTCAGGCCGTCTCCACAACTTACTTCTACGAGACTAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3598 WRKY

Protein Analysis

410

Amino Acids

45.3

Weight (kDa)

5.04

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29185 AT3G29185
fragaria_vesca	FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790 FvH4_6g47790
malus_domestica	MD09G1056700.v1.1 MD17G1054200.v1.1
prunus_persica	Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1 Prupe.3G262000_v2.0.a1
pyrus_communis	pycom111g04750 pycom17g05190
rosa_chinensis	RchiOBHm_Chr2g0166981
rosa_laevigata	RLG00000021686
rosa_multiflora	Rmu_sc0002735.1_g000026 Rmu_sc0010966.1_g000002 Rmu_sc0025421.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083840
rosa_rugosa	Rorug02G0527100
rosa_samantha	Rh2AG594000 Rh2BG605500 Rh2CG576400 Rh2DG617000
rosa_wichuraiana	Rw2G049460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	2 cut(s)	703, 824
AciI	CCGC	4 cut(s)	171, 232, 957, 962
AclWI	GGATC	2 cut(s)	880, 1004
AcoI	YGGCCR	1 cut(s)	925
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	5 cut(s)	177, 443, 530, 829, 1064
AfiI	CCNNNNNNNGG	4 cut(s)	250, 703, 824, 992
AflIII	ACRYGT	1 cut(s)	462
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	278, 368, 1024, 1184
AhlI	ACTAGT	1 cut(s)	977
AjnI	CCWGG	3 cut(s)	741, 1051, 1144
Alw26I	GTCTC	6 cut(s)	365, 556, 1147, 1153, 1201, 1211
AlwI	GGATC	2 cut(s)	880, 1004
AlwNI	CAGNNNCTG	1 cut(s)	1162
AoxI	GGCC	2 cut(s)	925, 1191
ApeKI	GCWGC	3 cut(s)	18, 326, 959
AsiGI	ACCGGT	1 cut(s)	590
Asp700I	GAANNNNTTC	2 cut(s)	464, 729
Asp718I	GGTACC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	706, 1142
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	238, 594, 605, 977
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	706, 1142
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	5, 338, 946
BccI	CCATC	4 cut(s)	47, 400, 752, 907
BceAI	ACGGC	3 cut(s)	552, 940, 1178
BciT130I	CCWGG	3 cut(s)	743, 1053, 1146
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	6 cut(s)	365, 556, 1147, 1153, 1201, 1211
BcuI	ACTAGT	1 cut(s)	977
BfaI	CTAG	3 cut(s)	330, 668, 978
BisI	GCNGC	4 cut(s)	19, 232, 327, 960
BlsI	GCNGC	4 cut(s)	20, 233, 328, 961
Bme1390I	CCNGG	4 cut(s)	138, 743, 1053, 1146
Bme18I	GGWCC	2 cut(s)	706, 1142
BmgT120I	GGNCC	2 cut(s)	706, 1142
BmiI	GGNNCC	5 cut(s)	134, 268, 530, 708, 1143
BmrFI	CCNGG	4 cut(s)	138, 743, 1053, 1146
BmsI	GCATC	3 cut(s)	225, 951, 1061
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	764, 1074
Bpu10I	CCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	2 cut(s)	929, 1157
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	2 cut(s)	831, 1066
BsaBI	GATNNNNATC	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	136, 249, 986
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 747, 777
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 703, 824, 992
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	1167
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	734
BseBI	CCWGG	3 cut(s)	743, 1053, 1146
BseDI	CCNNGG	3 cut(s)	136, 249, 986
BseGI	GGATG	3 cut(s)	39, 922, 1076
BseJI	GATNNNNATC	1 cut(s)	734
BseLI	CCNNNNNNNGG	4 cut(s)	250, 703, 824, 992
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	1167
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	3 cut(s)	5, 338, 946
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	2 cut(s)	927, 1193
BshNI	GGYRCC	1 cut(s)	528
BshTI	ACCGGT	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	138, 591
BslI	CCNNNNNNNGG	4 cut(s)	250, 703, 824, 992
BsmAI	GTCTC	6 cut(s)	365, 556, 1147, 1153, 1201, 1211
BsmBI	CGTCTC	1 cut(s)	1201
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	2 cut(s)	927, 1193
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	872, 996
BspACI	CCGC	4 cut(s)	171, 232, 957, 962
BspANI	GGCC	2 cut(s)	927, 1193
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	5 cut(s)	134, 268, 530, 708, 1143
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	880, 1004
BspT107I	GGYRCC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	1167
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	3 cut(s)	136, 249, 986
BssMI	GATC	2 cut(s)	872, 996
BssT1I	CCWWGG	1 cut(s)	986
Bst2UI	CCWGG	3 cut(s)	743, 1053, 1146
Bst4CI	ACNGT	4 cut(s)	250, 289, 472, 556
BstBAI	YACGTR	2 cut(s)	831, 1066
BstC8I	GCNNGC	3 cut(s)	324, 331, 541
BstDEI	CTNAG	2 cut(s)	524, 560
BstDSI	CCRYGG	1 cut(s)	249
BstEII	GGTNACC	1 cut(s)	1031
BstF5I	GGATG	3 cut(s)	39, 922, 1076
BstKTI	GATC	2 cut(s)	875, 999
BstMAI	GTCTC	6 cut(s)	365, 556, 1147, 1153, 1201, 1211
BstMBI	GATC	2 cut(s)	872, 996
BstNI	CCWGG	3 cut(s)	743, 1053, 1146
BstNSI	RCATGY	3 cut(s)	466, 547, 1063
BstPI	GGTNACC	1 cut(s)	1031
BstSCI	CCNGG	4 cut(s)	136, 741, 1051, 1144
BstV1I	GCAGC	3 cut(s)	5, 338, 946
BstV2I	GAAGAC	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	927, 1193
BtgI	CCRYGG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	1095
BtsCI	GGATG	3 cut(s)	39, 922, 1076
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	3 cut(s)	324, 331, 541
CaiI	CAGNNNCTG	1 cut(s)	1162
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	706, 1142
Csp6I	GTAC	5 cut(s)	176, 442, 529, 828, 1063
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	5 cut(s)	463, 544, 703, 793, 1060
CviQI	GTAC	5 cut(s)	176, 442, 529, 828, 1063
DdeI	CTNAG	2 cut(s)	524, 560
DpnI	GATC	2 cut(s)	874, 998
DpnII	GATC	2 cut(s)	872, 996
EaeI	YGGCCR	1 cut(s)	925
Eco130I	CCWWGG	1 cut(s)	986
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	706, 1142
Eco57I	CTGAAG	1 cut(s)	906
Eco91I	GGTNACC	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoO65I	GGTNACC	1 cut(s)	1031
EcoRII	CCWGG	3 cut(s)	741, 1051, 1144
EcoT14I	CCWWGG	1 cut(s)	986
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	986
Esp3I	CGTCTC	1 cut(s)	1201
FaeI	CATG	5 cut(s)	466, 547, 706, 796, 1063
FatI	CATG	5 cut(s)	462, 543, 702, 792, 1059
FauI	CCCGC	1 cut(s)	955
Fnu4HI	GCNGC	4 cut(s)	19, 232, 327, 960
FokI	GGATG	3 cut(s)	26, 929, 1083
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	4 cut(s)	19, 232, 327, 960
FspBI	CTAG	3 cut(s)	330, 668, 978
GluI	GCNGC	4 cut(s)	19, 232, 327, 960
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	764, 1074
HaeIII	GGCC	2 cut(s)	927, 1193
HapII	CCGG	2 cut(s)	138, 591
Hin1II	CATG	5 cut(s)	466, 547, 706, 796, 1063
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	320, 617
HinfI	GANTC	6 cut(s)	141, 295, 599, 730, 1042, 1103
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	2 cut(s)	138, 591
HphI	GGTGA	4 cut(s)	238, 594, 605, 977
Hpy166II	GTNNAC	3 cut(s)	241, 468, 475
Hpy188I	TCNGA	4 cut(s)	132, 146, 412, 1006
Hpy8I	GTNNAC	3 cut(s)	241, 468, 475
Hpy99I	CGWCG	3 cut(s)	100, 163, 633
HpyAV	CCTTC	3 cut(s)	280, 633, 1178
HpyCH4III	ACNGT	4 cut(s)	250, 289, 472, 556
HpyCH4IV	ACGT	3 cut(s)	830, 930, 1065
HpyCH4V	TGCA	4 cut(s)	304, 326, 661, 1100
HpyF3I	CTNAG	2 cut(s)	524, 560
HpySE526I	ACGT	3 cut(s)	830, 930, 1065
Hsp92II	CATG	5 cut(s)	466, 547, 706, 796, 1063
KpnI	GGTACC	1 cut(s)	532
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	872, 996
LmnI	GCTCC	3 cut(s)	119, 132, 394
Lsp1109I	GCAGC	3 cut(s)	5, 338, 946
LweI	GCATC	3 cut(s)	225, 951, 1061
MaeI	CTAG	3 cut(s)	330, 668, 978
MaeII	ACGT	3 cut(s)	830, 930, 1065
MaeIII	GTNAC	4 cut(s)	839, 847, 970, 1031
MalI	GATC	2 cut(s)	874, 998
MboI	GATC	2 cut(s)	872, 996
MboII	GAAGA	7 cut(s)	156, 356, 490, 593, 608, 730, 761
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	6 cut(s)	126, 256, 278, 400, 413, 447
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	3 cut(s)	94, 177, 984
MroXI	GAANNNNTTC	2 cut(s)	464, 729
MseI	TTAA	3 cut(s)	240, 381, 450
MslI	CAYNNNNRTG	1 cut(s)	1064
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	2 cut(s)	138, 591
MspR9I	CCNGG	4 cut(s)	138, 743, 1053, 1146
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	3 cut(s)	743, 1053, 1146
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	872, 996
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	5 cut(s)	466, 547, 706, 796, 1063
NlaIV	GGNNCC	5 cut(s)	134, 268, 530, 708, 1143
NmuCI	GTSAC	2 cut(s)	839, 970
NspI	RCATGY	3 cut(s)	466, 547, 1063
PciI	ACATGT	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	1 cut(s)	661
PdmI	GAANNNNTTC	2 cut(s)	464, 729
PfeI	GAWTC	5 cut(s)	141, 295, 599, 730, 1103
PflMI	CCANNNNNTGG	2 cut(s)	703, 824
PfoI	TCCNGGA	1 cut(s)	741
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	20, 233, 328, 961
PleI	GAGTC	1 cut(s)	1036
PpsI	GAGTC	1 cut(s)	1036
Ppu21I	YACGTR	2 cut(s)	831, 1066
PpuMI	RGGWCCY	1 cut(s)	1142
PscI	ACATGT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	1142
Psp6I	CCWGG	3 cut(s)	741, 1051, 1144
PspEI	GGTNACC	1 cut(s)	1031
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	3 cut(s)	741, 1051, 1144
PspN4I	GGNNCC	5 cut(s)	134, 268, 530, 708, 1143
PspPI	GGNCC	2 cut(s)	706, 1142
PspPPI	RGGWCCY	1 cut(s)	1142
PstNI	CAGNNNCTG	1 cut(s)	1162
RsaI	GTAC	5 cut(s)	177, 443, 530, 829, 1064
RsaNI	GTAC	5 cut(s)	176, 442, 529, 828, 1063
RseI	CAYNNNNRTG	1 cut(s)	1064
SaqAI	TTAA	3 cut(s)	240, 381, 450
SatI	GCNGC	4 cut(s)	19, 232, 327, 960
Sau3AI	GATC	2 cut(s)	872, 996
Sau96I	GGNCC	2 cut(s)	706, 1142
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	4 cut(s)	138, 743, 1053, 1146
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	3 cut(s)	225, 951, 1061
SgrAI	CRCCGGYG	1 cut(s)	590
SinI	GGWCC	2 cut(s)	706, 1142
SmiMI	CAYNNNNRTG	1 cut(s)	1064
SmlI	CTYRAG	2 cut(s)	908, 1136
SmoI	CTYRAG	2 cut(s)	908, 1136
SpeI	ACTAGT	1 cut(s)	977
Sse9I	AATT	6 cut(s)	126, 256, 278, 400, 413, 447
SsiI	CCGC	4 cut(s)	171, 232, 957, 962
SspMI	CTAG	3 cut(s)	330, 668, 978
StyD4I	CCNGG	4 cut(s)	136, 741, 1051, 1144
StyI	CCWWGG	1 cut(s)	986
TaaI	ACNGT	4 cut(s)	250, 289, 472, 556
TaiI	ACGT	3 cut(s)	833, 933, 1068
TaqI	TCGA	4 cut(s)	190, 219, 723, 783
TasI	AATT	6 cut(s)	126, 256, 278, 400, 413, 447
TatI	WGTACW	2 cut(s)	175, 441
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	5 cut(s)	141, 295, 599, 730, 1103
Tru1I	TTAA	3 cut(s)	240, 381, 450
Tru9I	TTAA	3 cut(s)	240, 381, 450
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	2 cut(s)	839, 970
TseI	GCWGC	3 cut(s)	18, 326, 959
Tsp45I	GTSAC	2 cut(s)	839, 970
TspDTI	ATGAA	3 cut(s)	198, 363, 393
TspGWI	ACGGA	2 cut(s)	835, 1041
TspRI	CASTG	1 cut(s)	561
Van91I	CCANNNNNTGG	2 cut(s)	703, 824
VpaK11BI	GGWCC	2 cut(s)	706, 1142
XceI	RCATGY	3 cut(s)	466, 547, 1063
XmnI	GAANNNNTTC	2 cut(s)	464, 729
XspI	CTAG	3 cut(s)	330, 668, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.