Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008018

Physical Location & Seq

Genomic Coordinates Reverse (-)

14093656 .. 14095588

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G33520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTCAAACATCGTTGTTCTAGACAACGGCGGTGGTCTAATCAAAGCCGGACAAGGCGGCGAGCGTGATCCCACCACCGTAATCCCGAACTGTCTCTACAAACCTCTCTCTTCCAAAAAATTCATCCACCCATCACCACTCACCACTCTCTCCGACGAAATCGACCTCACCTCCGCCGCCGTACGCCGCCCAATCGACCGTGGCTACCTCATAAACTCCGACCTACAACGCGAAATCTGGTCACACCTATTCACTTCCCTCCTCCACATAGCTCCTTCCTCCTCCTCTCTCCTCCTCACCGAAGCACCACTCTCAATCCCTTCCGTTCAACGAACCACCGACGAACTCGTCTTCGAAGATTTCGGATTCTCTTCTCTCTATATAGCTCATCCTCAATCTCTTGTTCATCTCTATGAAGCTAGTCGTCAGCCTGATTCAATCCTCTCAAAGACTCAGTGTAGTCTCGTTGTTGATTGTGGTTTCTCCTTCACTCACGCTGTTCCTGTTCTTCACAATTTCACTCTTAATCACGCCATTAAGAGGATTGATTTAGGAGGAAAAGCTTTTACTAATTACTTGAAGGAATTGGTTTCTTATAGATCTATTAATGTTATGGATGAAACTTTTTTAGTTGATGATGCTAAAGAGAAGCTTTGTTTTGTTTCACTTGATCTTCTTCGTGATCTCCGCCTTGCTAGAAATGGGAACACTCTTATCAAGTCTACTTATGTTCTTCCTGATGGTGTTACACATACCAAAGGCTATGTTAAAGACCCTCAAGCTGCTAAGAGGTTTCTTAGTTTGTCAGAGAAAGAGTCTGTGGTGGTGATGGATAAGGTTGGGGAGAGAAAGAAGGCTGACATGAACAAAAATGAGATTGATTTAACGAATGAGCGTTTTCTTGTACCTGAGACGTTATTCCAGCCTGCAGATTTAGGGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCATGCCATTCTTACTTGCAACCAGTTTTGTATCAAAGCATTATCTTAACTGGTGGAAGTACATTATTTCCACAACTTAAGGAGAGACTAGAAGGAGAGCTTCGACCACTTGTCCCAGATCACTTTGATGTGAAGATAACAACTCAGGAGGACCCCATACTAGGTGTATGGAGAGGTGGTTCACTTTTGGCTTCCAGCCCGGATTTCGAGTCCATGTGTGTCACCAAGGCTGAGTACGAAGAACTTGGATCAGCTCGGTGTCGTAGACGATTCTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0008283 GO:0009266 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030029 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090351 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

421

Amino Acids

46.94

Weight (kDa)

6.08

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	4 - 420	2e-91	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G33520
fragaria_vesca	FvH4_1g02800 FvH4_1g02800
malus_domestica	MD02G1028000.v1.1 MD15G1169700.v1.1
prunus_persica	Prupe.7G246800_v2.0.a1
pyrus_communis	pycom02g02300 pycom15g15130
rosa_chinensis	RchiOBHm_Chr2g0087891
rosa_laevigata	RLG00000015910
rosa_multiflora	Rmu_co8205590.1_g000001 Rmu_sc0008385.1_g000022 Rmu_sc0014136.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153140
rosa_rugosa	Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479300
rosa_samantha	Rh2AG034000 Rh2BG033200 Rh2CG033900 Rh2DG033600
rosa_wichuraiana	Rw2G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccI	GTMKAC	2 cut(s)	722, 1249
AccII	CGCG	1 cut(s)	231
AciI	CCGC	7 cut(s)	30, 57, 174, 177, 187, 688, 950
AclWI	GGATC	2 cut(s)	62, 1240
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	4 cut(s)	183, 906, 1045, 1220
AfiI	CCNNNNNNNGG	2 cut(s)	540, 1145
AflII	CTTAAG	1 cut(s)	1061
AgsI	TTSAA	3 cut(s)	329, 438, 580
AhdI	GACNNNNNGTC	1 cut(s)	1094
AloI	GAACNNNNNNTCC	2 cut(s)	1147, 1179
AluBI	AGCT	9 cut(s)	272, 386, 419, 563, 652, 782, 977, 1084, 1238
AluI	AGCT	9 cut(s)	272, 386, 419, 563, 652, 782, 977, 1084, 1238
Alw26I	GTCTC	4 cut(s)	98, 467, 905, 1063
AlwI	GGATC	2 cut(s)	62, 1240
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	1 cut(s)	119
AseI	ATTAAT	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	1135
AsuC2I	CCSGG	1 cut(s)	1184
AsuHPI	GGTGA	6 cut(s)	126, 133, 160, 289, 838, 1198
AsuII	TTCGAA	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	1135
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	3 cut(s)	139, 734, 823
BceAI	ACGGC	2 cut(s)	43, 164
BcnI	CCSGG	1 cut(s)	1184
BcoDI	GTCTC	4 cut(s)	98, 467, 905, 1063
BfaI	CTAG	5 cut(s)	20, 420, 696, 1073, 1145
BfmI	CTRYAG	1 cut(s)	927
BfrI	CTTAAG	1 cut(s)	1061
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	4 cut(s)	58, 177, 187, 783
BlsI	GCNGC	4 cut(s)	59, 178, 188, 784
Bme1390I	CCNGG	1 cut(s)	1184
Bme18I	GGWCC	1 cut(s)	1135
BmeRI	GACNNNNNGTC	1 cut(s)	1094
BmgT120I	GGNCC	1 cut(s)	1135
BmiI	GGNNCC	1 cut(s)	1137
BmrFI	CCNGG	1 cut(s)	1184
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	343
Bpu14I	TTCGAA	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	1184
BsaJI	CCNNGG	2 cut(s)	199, 1209
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 1147, 1177
Bsc4I	CCNNNNNNNGG	2 cut(s)	540, 1145
Bse1I	ACTGG	2 cut(s)	1007, 1039
BseDI	CCNNGG	2 cut(s)	199, 1209
BseGI	GGATG	4 cut(s)	123, 388, 622, 945
BseLI	CCNNNNNNNGG	2 cut(s)	540, 1145
BseMII	CTCAG	4 cut(s)	467, 900, 1142, 1206
BseNI	ACTGG	2 cut(s)	1007, 1039
BseRI	GAGGAG	5 cut(s)	251, 271, 274, 281, 284
BseXI	GCAGC	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	48, 1184
BsiWI	CGTACG	1 cut(s)	181
BslFI	GGGAC	2 cut(s)	966, 1082
BslI	CCNNNNNNNGG	2 cut(s)	540, 1145
BsmAI	GTCTC	4 cut(s)	98, 467, 905, 1063
BsmBI	CGTCTC	1 cut(s)	905
BsmFI	GGGAC	2 cut(s)	966, 1082
Bsp119I	TTCGAA	1 cut(s)	354
Bsp143I	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
BspACI	CCGC	7 cut(s)	30, 57, 174, 177, 187, 688, 950
BspCNI	CTCAG	4 cut(s)	466, 901, 1141, 1207
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	1137
BspMAI	CTGCAG	1 cut(s)	931
BspPI	GGATC	2 cut(s)	62, 1240
BspT104I	TTCGAA	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	1061
BsrI	ACTGG	2 cut(s)	1007, 1039
BssECI	CCNNGG	2 cut(s)	199, 1209
BssMI	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
BssT1I	CCWWGG	1 cut(s)	1209
Bst4CI	ACNGT	3 cut(s)	79, 92, 200
Bst6I	CTCTTC	2 cut(s)	115, 376
BstAFI	CTTAAG	1 cut(s)	1061
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	62, 927
BstDEI	CTNAG	6 cut(s)	453, 786, 797, 909, 1128, 1215
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	4 cut(s)	123, 388, 622, 945
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	6 cut(s)	70, 602, 673, 685, 1105, 1235
BstMAI	GTCTC	4 cut(s)	98, 467, 905, 1063
BstMBI	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	1182
BstSFI	CTRYAG	1 cut(s)	927
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	769
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	4 cut(s)	123, 388, 622, 945
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	62, 927
Cfr13I	GGNCC	1 cut(s)	1135
Csp6I	GTAC	4 cut(s)	182, 905, 1044, 1219
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	3 cut(s)	862, 987, 1198
CviQI	GTAC	4 cut(s)	182, 905, 1044, 1219
DdeI	CTNAG	6 cut(s)	453, 786, 797, 909, 1128, 1215
DpnI	GATC	6 cut(s)	69, 601, 672, 684, 1104, 1234
DpnII	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
DrdI	GACNNNNNNGTC	1 cut(s)	347
DriI	GACNNNNNGTC	1 cut(s)	1094
DseDI	GACNNNNNNGTC	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	115, 376
Eam1105I	GACNNNNNGTC	1 cut(s)	1094
EarI	CTCTTC	2 cut(s)	115, 376
EciI	GGCGGA	2 cut(s)	163, 677
Eco130I	CCWWGG	1 cut(s)	1209
Eco47I	GGWCC	1 cut(s)	1135
EcoO109I	RGGNCCY	1 cut(s)	1135
EcoT14I	CCWWGG	1 cut(s)	1209
ErhI	CCWWGG	1 cut(s)	1209
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	3 cut(s)	865, 990, 1201
FalI	AAGNNNNNCTT	4 cut(s)	636, 668, 1068, 1100
FaqI	GGGAC	2 cut(s)	966, 1082
FatI	CATG	3 cut(s)	861, 986, 1197
FauI	CCCGC	1 cut(s)	943
FblI	GTMKAC	2 cut(s)	722, 1249
Fnu4HI	GCNGC	4 cut(s)	58, 177, 187, 783
FokI	GGATG	4 cut(s)	110, 375, 629, 952
Fsp4HI	GCNGC	4 cut(s)	58, 177, 187, 783
FspBI	CTAG	5 cut(s)	20, 420, 696, 1073, 1145
GluI	GCNGC	4 cut(s)	58, 177, 187, 783
HapII	CCGG	2 cut(s)	48, 1184
Hin1II	CATG	3 cut(s)	865, 990, 1201
HindIII	AAGCTT	2 cut(s)	561, 650
HinfI	GANTC	7 cut(s)	366, 434, 451, 815, 943, 1193, 1254
HpaII	CCGG	2 cut(s)	48, 1184
HphI	GGTGA	6 cut(s)	126, 133, 160, 289, 838, 1198
Hpy166II	GTNNAC	3 cut(s)	723, 1166, 1250
Hpy188I	TCNGA	5 cut(s)	154, 220, 365, 808, 974
Hpy188III	TCNNGA	5 cut(s)	20, 85, 680, 737, 1130
Hpy8I	GTNNAC	3 cut(s)	723, 1166, 1250
Hpy99I	CGWCG	2 cut(s)	158, 344
HpyAV	CCTTC	6 cut(s)	285, 330, 496, 574, 847, 1070
HpyCH4III	ACNGT	3 cut(s)	79, 92, 200
HpyCH4IV	ACGT	1 cut(s)	914
HpyCH4V	TGCA	4 cut(s)	929, 959, 966, 1003
HpyF10VI	GCNNNNNNNGC	1 cut(s)	956
HpyF3I	CTNAG	6 cut(s)	453, 786, 797, 909, 1128, 1215
HpySE526I	ACGT	1 cut(s)	914
Hsp92II	CATG	3 cut(s)	865, 990, 1201
Kzo9I	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	5 cut(s)	20, 420, 696, 1073, 1145
MaeII	ACGT	1 cut(s)	914
MaeIII	GTNAC	3 cut(s)	240, 745, 1204
MalI	GATC	6 cut(s)	69, 601, 672, 684, 1104, 1234
MboI	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
MflI	RGATCY	1 cut(s)	599
MluCI	AATT	4 cut(s)	119, 514, 571, 584
MlyI	GAGTC	3 cut(s)	445, 824, 1202
MmeI	TCCRAC	2 cut(s)	177, 243
MseI	TTAA	7 cut(s)	525, 537, 606, 768, 884, 1031, 1062
MslI	CAYNNNNRTG	2 cut(s)	411, 1110
MspCI	CTTAAG	1 cut(s)	1061
MspI	CCGG	2 cut(s)	48, 1184
MspR9I	CCNGG	1 cut(s)	1184
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	956
NciI	CCSGG	1 cut(s)	1184
NdeII	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
NlaIII	CATG	3 cut(s)	865, 990, 1201
NlaIV	GGNNCC	1 cut(s)	1137
NmuCI	GTSAC	2 cut(s)	240, 1204
NspV	TTCGAA	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	366, 434, 943, 1254
Pfl23II	CGTACG	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	59, 178, 188, 784
PleI	GAGTC	3 cut(s)	445, 823, 1201
PpsI	GAGTC	3 cut(s)	445, 823, 1201
PpuMI	RGGWCCY	1 cut(s)	1135
PshBI	ATTAAT	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	1135
PspLI	CGTACG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	1137
PspPI	GGNCC	1 cut(s)	1135
PspPPI	RGGWCCY	1 cut(s)	1135
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PstI	CTGCAG	1 cut(s)	931
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	4 cut(s)	183, 906, 1045, 1220
RsaNI	GTAC	4 cut(s)	182, 905, 1044, 1219
RseI	CAYNNNNRTG	2 cut(s)	411, 1110
SaqAI	TTAA	7 cut(s)	525, 537, 606, 768, 884, 1031, 1062
SatI	GCNGC	4 cut(s)	58, 177, 187, 783
Sau3AI	GATC	6 cut(s)	67, 599, 670, 682, 1102, 1232
Sau96I	GGNCC	1 cut(s)	1135
SchI	GAGTC	3 cut(s)	445, 824, 1202
ScrFI	CCNGG	1 cut(s)	1184
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	927
SfuI	TTCGAA	1 cut(s)	354
SinI	GGWCC	1 cut(s)	1135
SmiMI	CAYNNNNRTG	2 cut(s)	411, 1110
SmlI	CTYRAG	2 cut(s)	777, 1061
SmoI	CTYRAG	2 cut(s)	777, 1061
Sse9I	AATT	4 cut(s)	119, 514, 571, 584
SsiI	CCGC	7 cut(s)	30, 57, 174, 177, 187, 688, 950
SspMI	CTAG	5 cut(s)	20, 420, 696, 1073, 1145
StyD4I	CCNGG	1 cut(s)	1182
StyI	CCWWGG	1 cut(s)	1209
TaaI	ACNGT	3 cut(s)	79, 92, 200
TaiI	ACGT	1 cut(s)	917
TaqI	TCGA	5 cut(s)	162, 195, 354, 1087, 1191
TasI	AATT	4 cut(s)	119, 514, 571, 584
TatI	WGTACW	1 cut(s)	1043
TauI	GCSGC	3 cut(s)	60, 179, 189
TfiI	GAWTC	4 cut(s)	366, 434, 943, 1254
Tru1I	TTAA	7 cut(s)	525, 537, 606, 768, 884, 1031, 1062
Tru9I	TTAA	7 cut(s)	525, 537, 606, 768, 884, 1031, 1062
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	2 cut(s)	240, 1204
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	2 cut(s)	240, 1204
TspDTI	ATGAA	7 cut(s)	112, 395, 429, 633, 878, 956, 1250
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	461
Vha464I	CTTAAG	1 cut(s)	1061
VpaK11BI	GGWCC	1 cut(s)	1135
VspI	ATTAAT	1 cut(s)	606
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	722, 1249
XspI	CTAG	5 cut(s)	20, 420, 696, 1073, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.