Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008018

Physical Location & Seq

Genomic Coordinates Forward (+)

2620084 .. 2622968

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG033900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCACCAAAACGGCGTCGTTGTTCTCGACAACGGCGGCGGCCTAATCAAAGCCGGGTACGGCGGCGAGCGCGACCCCGCCGCCATAATCCCCAACTGCGTCTACCGCCCTCTCTCCTCCAAGAAATGGCTCACCCCTTCCCCCACCGACCCCATCGACCTCACCTCCGCCGCCGTCCGCCGCCCCATCGACCGCGGCTACCTTATCAACCCGGACCTCCAGCGCGAGATCTGGGCCCACCTCTTCTCCCAAGTCCTCCGGGTCAACCCGGCCCAATCCTCCCTCCTCCTAACCGAGCCCCTCTTCACCCTCCCCTCCATCCAACGCGCCGCCGACGAGCTCGTCTTCGAGGACTTCAACTTCGCCGCCCTCTACGTGGCCCACGCGCCGTCGCTGGCCCACCTCTACGAGGCCAGCCGCCGGCCCGTTAAGGCCCAATGCAGCCTCGTCGTCGATTGTGGATTCTCGTTCACCCACGCCGTCCCGGTGTTCCAGAACTTTCCGATCAACTACGCCGCGAAGAGAATTGACCTGGGGGGAAAGGCGTTGACCAATTACCTCAAGGAGCTCGTTTCGTACCGCTCTGTGAATGTTATGGACGAAACGTTTCTTATTGACGATGTGAAGGAGAAGCTCTGCTTTGTCTCCATGAATGTGACTCGTGACCTCCAGATTGCAAAGAAGCATGGAAAGGACAATGCTTTCAGGTGCACATATGTGTTGCCTGATGGTGTTACGCATACACAAGGGTATGTTAAAGACCCAGAAGAGGCAAAGAGGTACTTGGCCATAGGAGACAGTGATTCGCTTCAAGAAGTGGCTAAGAAGATGGATGTGAATCGGGTTGAAGTTGTGGACAAGTTGGAGGAGCGAAAGAAGATTGATTTGAGCAAGAATGTAATTCTGCTGTCATTTTTTATTTTTTTTGGAACTAGACTATTGCTTGTGTTGGTTTGCCAATTTTTTGAGCTGTTTGATGATTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0008283 GO:0009266 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030029 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090351 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

329

Amino Acids

37.03

Weight (kDa)

6.4

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	3 - 248	2.5e-50	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G33520
fragaria_vesca	FvH4_1g02800 FvH4_1g02800
malus_domestica	MD02G1028000.v1.1 MD15G1169700.v1.1
prunus_persica	Prupe.7G246800_v2.0.a1
pyrus_communis	pycom02g02300 pycom15g15130
rosa_chinensis	RchiOBHm_Chr2g0087891
rosa_laevigata	RLG00000015910
rosa_multiflora	Rmu_co8205590.1_g000001 Rmu_sc0008385.1_g000022 Rmu_sc0014136.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153140
rosa_rugosa	Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479300
rosa_samantha	Rh2AG034000 Rh2BG033200 Rh2CG033900 Rh2DG033600
rosa_wichuraiana	Rw2G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
AclI	AACGTT	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	786
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	3 cut(s)	59, 578, 782
AfiI	CCNNNNNNNGG	5 cut(s)	126, 376, 409, 420, 769
AgsI	TTSAA	3 cut(s)	358, 812, 848
AjnI	CCWGG	1 cut(s)	531
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	4 cut(s)	340, 568, 634, 970
AluI	AGCT	4 cut(s)	340, 568, 634, 970
Alw21I	GWGCWC	3 cut(s)	342, 570, 713
Alw26I	GTCTC	2 cut(s)	649, 789
Alw44I	GTGCAC	1 cut(s)	709
AoxI	GGCC	9 cut(s)	40, 234, 270, 378, 396, 411, 422, 432, 786
ApaI	GGGCCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	709
ApeKI	GCWGC	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	4 cut(s)	72, 225, 329, 388
AspS9I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
AsuC2I	CCSGG	5 cut(s)	55, 212, 260, 269, 485
AsuHPI	GGTGA	4 cut(s)	124, 154, 298, 463
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	2 cut(s)	238, 713
BalI	TGGCCA	1 cut(s)	788
BanII	GRGCYC	4 cut(s)	238, 300, 342, 570
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	3 cut(s)	342, 570, 713
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	5 cut(s)	161, 194, 326, 722, 823
BceAI	ACGGC	6 cut(s)	28, 49, 76, 158, 373, 464
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciT130I	CCWGG	1 cut(s)	533
BcnI	CCSGG	5 cut(s)	55, 212, 260, 269, 485
BcoDI	GTCTC	2 cut(s)	649, 789
BfaI	CTAG	1 cut(s)	933
BglII	AGATCT	1 cut(s)	228
Bme1390I	CCNGG	6 cut(s)	55, 212, 260, 269, 485, 533
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	6 cut(s)	55, 212, 260, 269, 485, 533
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	2 cut(s)	203, 653
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	5 cut(s)	55, 212, 260, 269, 485
BsaAI	YACGTR	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	837
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	193, 532
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 230, 260
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 376, 409, 420, 769
Bse118I	RCCGGY	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	193, 532
BseGI	GGATG	2 cut(s)	318, 838
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	5 cut(s)	126, 376, 409, 420, 769
BseRI	GAGGAG	3 cut(s)	106, 275, 881
BseSI	GKGCMC	2 cut(s)	238, 713
BseXI	GCAGC	1 cut(s)	453
Bsh1236I	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	9 cut(s)	42, 236, 272, 380, 398, 413, 424, 434, 788
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	3 cut(s)	342, 570, 713
BsiSI	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	5 cut(s)	126, 376, 409, 420, 769
BsmAI	GTCTC	2 cut(s)	649, 789
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	9 cut(s)	42, 236, 272, 380, 398, 413, 424, 434, 788
Bsp120I	GGGCCC	1 cut(s)	234
Bsp1286I	GDGCHC	5 cut(s)	238, 300, 342, 570, 713
Bsp143I	GATC	2 cut(s)	228, 504
BspANI	GGCC	9 cut(s)	42, 236, 272, 380, 398, 413, 424, 434, 788
BspFNI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
BspLI	GGNNCC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	193, 532
BssMI	GATC	2 cut(s)	228, 504
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	1 cut(s)	800
Bst6I	CTCTTC	4 cut(s)	248, 308, 515, 762
BstACI	GRCGYC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	4 cut(s)	68, 396, 415, 422
BstDEI	CTNAG	1 cut(s)	822
BstDSI	CCRYGG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	318, 838
BstFNI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
BstHHI	GCGC	4 cut(s)	72, 225, 329, 388
BstKTI	GATC	2 cut(s)	231, 507
BstMAI	GTCTC	2 cut(s)	649, 789
BstMBI	GATC	2 cut(s)	228, 504
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 105
BstNI	CCWGG	1 cut(s)	533
BstSCI	CCNGG	6 cut(s)	53, 210, 258, 267, 483, 531
BstSLI	GKGCMC	2 cut(s)	238, 713
BstUI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
BstV1I	GCAGC	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	9 cut(s)	42, 236, 272, 380, 398, 413, 424, 434, 788
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	318, 838
BtsIMutI	CAGTG	1 cut(s)	805
Cac8I	GCNNGC	4 cut(s)	68, 396, 415, 422
CfoI	GCGC	4 cut(s)	72, 225, 329, 388
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
Cfr42I	CCGCGG	1 cut(s)	196
CseI	GACGC	2 cut(s)	4, 88
Csp6I	GTAC	3 cut(s)	58, 577, 781
CviAII	CATG	2 cut(s)	649, 686
CviQI	GTAC	3 cut(s)	58, 577, 781
DdeI	CTNAG	1 cut(s)	822
DpnI	GATC	2 cut(s)	230, 506
DpnII	GATC	2 cut(s)	228, 504
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	4 cut(s)	248, 308, 515, 762
EarI	CTCTTC	4 cut(s)	248, 308, 515, 762
EciI	GGCGGA	2 cut(s)	157, 167
Ecl136II	GAGCTC	2 cut(s)	340, 568
Eco24I	GRGCYC	4 cut(s)	238, 300, 342, 570
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	2 cut(s)	340, 568
EcoICRI	GAGCTC	2 cut(s)	340, 568
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	531
EcoT38I	GRGCYC	4 cut(s)	238, 300, 342, 570
FaeI	CATG	2 cut(s)	652, 689
FaiI	YATR	9 cut(s)	86, 596, 650, 687, 715, 717, 741, 753, 791
FalI	AAGNNNNNCTT	4 cut(s)	623, 655, 767, 799
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	2 cut(s)	648, 685
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	102
FokI	GGATG	2 cut(s)	305, 845
FriOI	GRGCYC	4 cut(s)	238, 300, 342, 570
FspBI	CTAG	1 cut(s)	933
GlaI	GCGC	4 cut(s)	71, 224, 328, 387
GsuI	CTGGAG	2 cut(s)	203, 653
HaeIII	GGCC	9 cut(s)	42, 236, 272, 380, 398, 413, 424, 434, 788
HapII	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
HgaI	GACGC	2 cut(s)	4, 88
HhaI	GCGC	4 cut(s)	72, 225, 329, 388
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	652, 689
Hin6I	GCGC	4 cut(s)	70, 223, 327, 386
HinP1I	GCGC	4 cut(s)	70, 223, 327, 386
HincII	GTYRAC	2 cut(s)	265, 549
HindII	GTYRAC	2 cut(s)	265, 549
HinfI	GANTC	4 cut(s)	462, 658, 803, 838
HpaII	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
HphI	GGTGA	4 cut(s)	124, 154, 298, 463
Hpy166II	GTNNAC	6 cut(s)	103, 265, 471, 549, 711, 856
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	5 cut(s)	26, 493, 662, 670, 812
Hpy8I	GTNNAC	6 cut(s)	103, 265, 471, 549, 711, 856
Hpy99I	CGWCG	5 cut(s)	20, 338, 394, 452, 455
HpyAV	CCTTC	2 cut(s)	147, 619
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	2 cut(s)	375, 605
HpyCH4V	TGCA	4 cut(s)	4, 441, 677, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 105
HpyF3I	CTNAG	1 cut(s)	822
HpySE526I	ACGT	2 cut(s)	375, 605
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	652, 689
HspAI	GCGC	4 cut(s)	70, 223, 327, 386
KroI	GCCGGC	1 cut(s)	420
KroNI	GCCGGC	1 cut(s)	422
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	228, 504
LmnI	GCTCC	2 cut(s)	565, 868
Lsp1109I	GCAGC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	2 cut(s)	375, 605
MaeIII	GTNAC	3 cut(s)	655, 662, 733
MalI	GATC	2 cut(s)	230, 506
MbiI	CCGCTC	1 cut(s)	582
MboI	GATC	2 cut(s)	228, 504
MboII	GAAGA	7 cut(s)	235, 295, 337, 532, 779, 838, 889
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	5 cut(s)	238, 300, 342, 570, 713
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	4 cut(s)	525, 553, 900, 959
MluNI	TGGCCA	1 cut(s)	788
MlyI	GAGTC	1 cut(s)	652
MmeI	TCCRAC	2 cut(s)	346, 843
Mox20I	TGGCCA	1 cut(s)	788
MroNI	GCCGGC	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	2 cut(s)	429, 756
MslI	CAYNNNNRTG	2 cut(s)	653, 716
Msp20I	TGGCCA	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
MspR9I	CCNGG	6 cut(s)	55, 212, 260, 269, 485, 533
MvaI	CCWGG	1 cut(s)	533
MvnI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
MwoI	GCNNNNNNNGC	2 cut(s)	69, 105
NaeI	GCCGGC	1 cut(s)	422
NciI	CCSGG	5 cut(s)	55, 212, 260, 269, 485
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	2 cut(s)	228, 504
NgoMIV	GCCGGC	1 cut(s)	420
NlaIII	CATG	2 cut(s)	652, 689
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	655, 662
OliI	CACNNNNGTG	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	3 cut(s)	462, 803, 838
PflMI	CCANNNNNTGG	1 cut(s)	126
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
Ppu21I	YACGTR	1 cut(s)	376
Psp124BI	GAGCTC	2 cut(s)	342, 570
Psp1406I	AACGTT	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	1 cut(s)	236
PspOMI	GGGCCC	1 cut(s)	234
PspPI	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	3 cut(s)	59, 578, 782
RsaNI	GTAC	3 cut(s)	58, 577, 781
RseI	CAYNNNNRTG	2 cut(s)	653, 716
SacI	GAGCTC	2 cut(s)	342, 570
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	429, 756
Sau3AI	GATC	2 cut(s)	228, 504
Sau96I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
SchI	GAGTC	1 cut(s)	652
ScrFI	CCNGG	6 cut(s)	55, 212, 260, 269, 485, 533
SduI	GDGCHC	5 cut(s)	238, 300, 342, 570, 713
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	2 cut(s)	653, 716
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	4 cut(s)	525, 553, 900, 959
SspMI	CTAG	1 cut(s)	933
SstI	GAGCTC	2 cut(s)	342, 570
StyD4I	CCNGG	6 cut(s)	53, 210, 258, 267, 483, 531
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	2 cut(s)	378, 608
TaqI	TCGA	5 cut(s)	27, 156, 189, 348, 453
TasI	AATT	4 cut(s)	525, 553, 900, 959
TfiI	GAWTC	3 cut(s)	462, 803, 838
Tru1I	TTAA	2 cut(s)	429, 756
Tru9I	TTAA	2 cut(s)	429, 756
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	2 cut(s)	655, 662
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	2 cut(s)	655, 662
TspDTI	ATGAA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	805
Van91I	CCANNNNNTGG	1 cut(s)	126
VneI	GTGCAC	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.