pycom15g15130

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
10502967 .. 10505189
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15130.1

Sequence Viewer

Length: 1284 bp
ATGCATCAAAATGTCGTCGTCTTAGACAACGGCGGCGGCCTAATCAAAGCCGGGATCGGCGGCGAGCGCGACCCCTCCGCCATTATACCCAACTGCGTCTACCGCCCGCTCTCCTCCAAGAAATGGGTCCACCCCTCCCCCACCGAGCCCATGGACCTCACGTCCGCCGCCGTCCGCCGCCCAATCGACCGCGGCTACCTAATTAACCCGGACCTCCAGCGCGAGATTTGGGCCAACCTCTTCTCCTCCCTCCTCCGGGTCAACCCGGCCCAATCCTCCCTCCTCCTAACGGAGCCCCTCTTCGCCCTCCCCTCCATCCAACGCGCCACCGACGAGATCGTCTTCGAGGACTTCAACTTCTCGGCGCTCTACGTCGCGAACTCCCCCTCCCTCGCCCACCTCTGCGAGGCCAGCCGCCGCGAAATTAAGGCGCAGTGCAGCCTCGTCGTCGACTGCGGCTTCTCCTTCACGCACGCCGCCCCCGTCTTCCAGAACTTCACCATCAACTACGCCGCCAAGCGAATCGATTTGGGCGGCAAGGCATTGACCAATTACCTCAAGGAGCTCGTCTCTTACCGCTCCGTCAATGTCATGGACGAAACGTTTCTCATCGATGATGTTAAGGAGAAGCTCTGCTTTGTTTCCATGGACGTTGATCGTGACCTCCAGATTGCAAAGAAACATGGGAAGGACAATCTTTTCAGGTGCACTTATGTGTTGCCTGACGGCATTACGCACACAAAAGGATTTGTTAAGAAACCAGATGAGGCGAAGAGATACTTGGCTTTGAGAGACGGTGACACACTTAAAGATGTGGAGAAGAAGATGGATTTGGATAAGATGGAGGTTACAGACAAGTTGGTGGATCGAAAGAAGATTGATTTGAGCAAGAATGAATTTGACCTGACAAATGAAAGGTTCCTTGTGCCGGAGATGATCTTCCATCCTGCTGATTTGGGAATGAATCAGGCTGGACTAGCAGAGTGCATTGTTCGAGCTGTCAGTTCCTGCCATCCACATCTTCAGCCAGTACTTTATGAAAGCATTCTCTTAACAGGTGGAAGCACTCTATTTCCTCGACTAGCTGATAGACTGGAGAGGGAGCTGCGGCCTCTTGTTCCTGATGACTATCCAGTGAAGATAACTCCTCAAGAAGATCCCATACTAAGCGTTTGGAGAGGAGGGTCTATTTTAGCATCAAGTCCGGATTTTGAAGCAATGTGTGTCACCAAGGCCGACTACGAGGAGCTTGGATCTGCTCGATGTCGCAAGAGATTCTTTTAA

Protein Analysis

428

Amino Acids

47.99

Weight (kDa)

6.05

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 3 - 427 2e-91 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 123
AccBSI CCGCTC 2 cut(s) 109, 579
AccI GTMKAC 2 cut(s) 99, 450
AccII CGCG 6 cut(s) 69, 192, 222, 324, 377, 420
AccIII TCCGGA 1 cut(s) 1204
AclI AACGTT 1 cut(s) 602
AclWI GGATC 4 cut(s) 62, 873, 1151, 1261
AcsI RAATTY 1 cut(s) 896
AcuI CTGAAG 1 cut(s) 1007
AfaI GTAC 1 cut(s) 1032
AfiI CCNNNNNNNGG 6 cut(s) 123, 255, 256, 289, 406, 928
AgsI TTSAA 2 cut(s) 355, 1214
AhdI GACNNNNNGTC 1 cut(s) 160
AjiI CACGTC 1 cut(s) 162
AjuI GAANNNNNNNTTGG 4 cut(s) 764, 796, 815, 847
AleI CACNNNNGTG 1 cut(s) 713
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 6 cut(s) 565, 631, 998, 1085, 1105, 1249
AluI AGCT 6 cut(s) 565, 631, 998, 1085, 1105, 1249
Alw21I GWGCWC 2 cut(s) 567, 710
Alw26I GTCTC 2 cut(s) 574, 786
Alw44I GTGCAC 1 cut(s) 706
AlwI GGATC 4 cut(s) 62, 873, 1151, 1261
AlwNI CAGNNNCTG 1 cut(s) 1008
Aor13HI TCCGGA 1 cut(s) 1204
AoxI GGCC 6 cut(s) 37, 231, 267, 408, 1109, 1233
ApaLI GTGCAC 1 cut(s) 706
ApeKI GCWGC 2 cut(s) 438, 1105
ApoI RAATTY 1 cut(s) 896
Asp700I GAANNNNTTC 2 cut(s) 603, 1044
AspLEI GCGC 5 cut(s) 69, 222, 326, 367, 433
AspS9I GGNCC 5 cut(s) 127, 154, 211, 231, 268
AsuC2I CCSGG 4 cut(s) 52, 209, 257, 266
AsuHPI GGTGA 3 cut(s) 490, 809, 1219
AvaII GGWCC 3 cut(s) 127, 154, 211
BaeGI GKGCMC 1 cut(s) 710
BanII GRGCYC 3 cut(s) 150, 297, 567
BarI GAAGNNNNNNTAC 2 cut(s) 1146, 1178
BbsI GAAGAC 2 cut(s) 334, 478
Bbv12I GWGCWC 2 cut(s) 567, 710
BbvI GCAGC 2 cut(s) 450, 1092
BccI CCATC 6 cut(s) 323, 509, 820, 835, 951, 1020
BceAI ACGGC 3 cut(s) 46, 155, 742
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BcnI CCSGG 4 cut(s) 52, 209, 257, 266
BcoDI GTCTC 2 cut(s) 574, 786
BfaI CTAG 2 cut(s) 977, 1082
BfoI RGCGCY 1 cut(s) 368
BmcAI AGTACT 1 cut(s) 1032
Bme1390I CCNGG 4 cut(s) 52, 209, 257, 266
Bme18I GGWCC 3 cut(s) 127, 154, 211
BmeRI GACNNNNNGTC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 5 cut(s) 127, 154, 211, 231, 268
BmiI GGNNCC 3 cut(s) 128, 294, 920
BmrFI CCNGG 4 cut(s) 52, 209, 257, 266
BmsI GCATC 2 cut(s) 13, 1205
BpiI GAAGAC 2 cut(s) 334, 478
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpmI CTGGAG 3 cut(s) 200, 650, 1115
BpuEI CTTGAG 2 cut(s) 542, 1134
BpuMI CCSGG 4 cut(s) 52, 209, 257, 266
Bsa29I ATCGAT 2 cut(s) 525, 612
BsaBI GATNNNNATC 1 cut(s) 1128
BsaJI CCNNGG 4 cut(s) 150, 190, 645, 1230
BsaWI WCCGGW 1 cut(s) 1204
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 371, 401
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 255, 256, 289, 406, 928
Bse1I ACTGG 3 cut(s) 1028, 1098, 1133
Bse3DI GCAATG 1 cut(s) 1224
Bse8I GATNNNNATC 1 cut(s) 1128
BseAI TCCGGA 1 cut(s) 1204
BseCI ATCGAT 2 cut(s) 525, 612
BseDI CCNNGG 4 cut(s) 150, 190, 645, 1230
BseGI GGATG 3 cut(s) 315, 943, 1012
BseJI GATNNNNATC 1 cut(s) 1128
BseLI CCNNNNNNNGG 6 cut(s) 123, 255, 256, 289, 406, 928
BseMI GCAATG 1 cut(s) 1224
BseNI ACTGG 3 cut(s) 1028, 1098, 1133
BseRI GAGGAG 7 cut(s) 103, 235, 242, 272, 1137, 1194, 1259
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 2 cut(s) 450, 1092
BsgI GTGCAG 1 cut(s) 457
Bsh1236I CGCG 6 cut(s) 69, 192, 222, 324, 377, 420
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 6 cut(s) 39, 233, 269, 410, 1111, 1235
BshVI ATCGAT 2 cut(s) 525, 612
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 567, 710
BsiSI CCGG 6 cut(s) 51, 209, 256, 266, 929, 1205
BslI CCNNNNNNNGG 6 cut(s) 123, 255, 256, 289, 406, 928
BsmAI GTCTC 2 cut(s) 574, 786
BsmBI CGTCTC 2 cut(s) 574, 786
BsmI GAATGC 1 cut(s) 1044
BsnI GGCC 6 cut(s) 39, 233, 269, 410, 1111, 1235
Bsp1286I GDGCHC 4 cut(s) 150, 297, 567, 710
Bsp13I TCCGGA 1 cut(s) 1204
Bsp143I GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
Bsp19I CCATGG 2 cut(s) 150, 645
Bsp68I TCGCGA 1 cut(s) 377
BspANI GGCC 6 cut(s) 39, 233, 269, 410, 1111, 1235
BspDI ATCGAT 2 cut(s) 525, 612
BspEI TCCGGA 1 cut(s) 1204
BspFNI CGCG 6 cut(s) 69, 192, 222, 324, 377, 420
BspLI GGNNCC 3 cut(s) 128, 294, 920
BspPI GGATC 4 cut(s) 62, 873, 1151, 1261
BsrBI CCGCTC 2 cut(s) 109, 579
BsrDI GCAATG 1 cut(s) 1224
BsrI ACTGG 3 cut(s) 1028, 1098, 1133
BssECI CCNNGG 4 cut(s) 150, 190, 645, 1230
BssMI GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
BssT1I CCWWGG 3 cut(s) 150, 645, 1230
Bst4CI ACNGT 1 cut(s) 797
Bst6I CTCTTC 3 cut(s) 245, 305, 767
BstC8I GCNNGC 4 cut(s) 65, 107, 412, 474
BstDEI CTNAG 2 cut(s) 22, 1166
BstDSI CCRYGG 3 cut(s) 150, 190, 645
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 3 cut(s) 315, 943, 1012
BstFNI CGCG 6 cut(s) 69, 192, 222, 324, 377, 420
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 5 cut(s) 69, 222, 326, 367, 433
BstKTI GATC 7 cut(s) 57, 339, 658, 868, 939, 1159, 1256
BstMAI GTCTC 2 cut(s) 574, 786
BstMBI GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 4 cut(s) 66, 102, 411, 977
BstSCI CCNGG 4 cut(s) 50, 207, 255, 264
BstSLI GKGCMC 1 cut(s) 710
BstUI CGCG 6 cut(s) 69, 192, 222, 324, 377, 420
BstV1I GCAGC 2 cut(s) 450, 1092
BstV2I GAAGAC 2 cut(s) 334, 478
BstX2I RGATCY 2 cut(s) 1156, 1253
BstYI RGATCY 2 cut(s) 1156, 1253
Bsu15I ATCGAT 2 cut(s) 525, 612
BsuRI GGCC 6 cut(s) 39, 233, 269, 410, 1111, 1235
BsuTUI ATCGAT 2 cut(s) 525, 612
BtgI CCRYGG 3 cut(s) 150, 190, 645
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 3 cut(s) 315, 943, 1012
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 440, 1140
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 4 cut(s) 65, 107, 412, 474
CaiI CAGNNNCTG 1 cut(s) 1008
CfoI GCGC 5 cut(s) 69, 222, 326, 367, 433
Cfr13I GGNCC 5 cut(s) 127, 154, 211, 231, 268
Cfr42I CCGCGG 1 cut(s) 193
ClaI ATCGAT 2 cut(s) 525, 612
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 1031
CviAII CATG 4 cut(s) 151, 592, 646, 683
CviQI GTAC 1 cut(s) 1031
DdeI CTNAG 2 cut(s) 22, 1166
DpnI GATC 7 cut(s) 56, 338, 657, 867, 938, 1158, 1255
DpnII GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
DrdI GACNNNNNNGTC 1 cut(s) 338
DriI GACNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 338
Eam1104I CTCTTC 3 cut(s) 245, 305, 767
Eam1105I GACNNNNNGTC 1 cut(s) 160
EarI CTCTTC 3 cut(s) 245, 305, 767
EciI GGCGGA 3 cut(s) 67, 154, 164
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 3 cut(s) 150, 645, 1230
Eco24I GRGCYC 3 cut(s) 150, 297, 567
Eco47I GGWCC 3 cut(s) 127, 154, 211
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 1007
EcoICRI GAGCTC 1 cut(s) 565
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoT14I CCWWGG 3 cut(s) 150, 645, 1230
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 150, 297, 567
ErhI CCWWGG 3 cut(s) 150, 645, 1230
Esp3I CGTCTC 2 cut(s) 574, 786
FaeI CATG 4 cut(s) 154, 595, 649, 686
FaiI YATR 8 cut(s) 86, 152, 593, 647, 684, 714, 1038, 1163
FalI AAGNNNNNCTT 5 cut(s) 620, 652, 764, 796, 1262
FatI CATG 4 cut(s) 150, 591, 645, 682
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 2 cut(s) 99, 450
FokI GGATG 3 cut(s) 302, 930, 999
FriOI GRGCYC 3 cut(s) 150, 297, 567
FspBI CTAG 2 cut(s) 977, 1082
GlaI GCGC 5 cut(s) 68, 221, 325, 366, 432
GsuI CTGGAG 3 cut(s) 200, 650, 1115
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 6 cut(s) 39, 233, 269, 410, 1111, 1235
HapII CCGG 6 cut(s) 51, 209, 256, 266, 929, 1205
HgaI GACGC 1 cut(s) 85
HhaI GCGC 5 cut(s) 69, 222, 326, 367, 433
Hin1II CATG 4 cut(s) 154, 595, 649, 686
Hin6I GCGC 5 cut(s) 67, 220, 324, 365, 431
HinP1I GCGC 5 cut(s) 67, 220, 324, 365, 431
HincII GTYRAC 2 cut(s) 262, 451
HindII GTYRAC 2 cut(s) 262, 451
HinfI GANTC 3 cut(s) 522, 964, 1275
HpaII CCGG 6 cut(s) 51, 209, 256, 266, 929, 1205
HphI GGTGA 3 cut(s) 490, 809, 1219
Hpy166II GTNNAC 5 cut(s) 100, 130, 262, 451, 708
Hpy188III TCNNGA 7 cut(s) 376, 490, 659, 667, 1121, 1151, 1205
Hpy8I GTNNAC 5 cut(s) 100, 130, 262, 451, 708
Hpy99I CGWCG 5 cut(s) 20, 335, 377, 449, 452
HpyAV CCTTC 2 cut(s) 475, 682
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 4 cut(s) 161, 372, 602, 651
HpyCH4V TGCA 5 cut(s) 4, 438, 674, 708, 987
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 102, 411, 977
HpyF3I CTNAG 2 cut(s) 22, 1166
HpySE526I ACGT 4 cut(s) 161, 372, 602, 651
Hsp92II CATG 4 cut(s) 154, 595, 649, 686
HspAI GCGC 5 cut(s) 67, 220, 324, 365, 431
Kpn2I TCCGGA 1 cut(s) 1204
KspI CCGCGG 1 cut(s) 193
Kzo9I GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
LmnI GCTCC 5 cut(s) 292, 562, 584, 1102, 1246
Lsp1109I GCAGC 2 cut(s) 450, 1092
LweI GCATC 2 cut(s) 13, 1205
MaeI CTAG 2 cut(s) 977, 1082
MaeII ACGT 4 cut(s) 161, 372, 602, 651
MaeIII GTNAC 4 cut(s) 659, 797, 847, 1225
MalI GATC 7 cut(s) 56, 338, 657, 867, 938, 1158, 1255
MbiI CCGCTC 2 cut(s) 109, 579
MboI GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
MflI RGATCY 2 cut(s) 1156, 1253
MhlI GDGCHC 4 cut(s) 150, 297, 567, 710
MluCI AATT 4 cut(s) 201, 423, 550, 896
MmeI TCCRAC 1 cut(s) 343
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 1204
MroXI GAANNNNTTC 2 cut(s) 603, 1044
MseI TTAA 7 cut(s) 204, 426, 621, 753, 807, 1052, 1282
MslI CAYNNNNRTG 2 cut(s) 9, 713
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 6 cut(s) 51, 209, 256, 266, 929, 1205
MspR9I CCNGG 4 cut(s) 52, 209, 257, 266
Mva1269I GAATGC 1 cut(s) 1044
MvnI CGCG 6 cut(s) 69, 192, 222, 324, 377, 420
MwoI GCNNNNNNNGC 4 cut(s) 66, 102, 411, 977
NciI CCSGG 4 cut(s) 52, 209, 257, 266
NcoI CCATGG 2 cut(s) 150, 645
NdeII GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
NlaIII CATG 4 cut(s) 154, 595, 649, 686
NlaIV GGNNCC 3 cut(s) 128, 294, 920
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 3 cut(s) 659, 797, 1225
NruI TCGCGA 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PctI GAATGC 1 cut(s) 1044
PdmI GAANNNNTTC 2 cut(s) 603, 1044
PfeI GAWTC 3 cut(s) 522, 964, 1275
PflMI CCANNNNNTGG 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 128, 294, 920
PspPI GGNCC 5 cut(s) 127, 154, 211, 231, 268
PstNI CAGNNNCTG 1 cut(s) 1008
PsuI RGATCY 2 cut(s) 1156, 1253
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 1 cut(s) 1032
RsaNI GTAC 1 cut(s) 1031
RseI CAYNNNNRTG 2 cut(s) 9, 713
SacI GAGCTC 1 cut(s) 567
SacII CCGCGG 1 cut(s) 193
SalI GTCGAC 1 cut(s) 449
SaqAI TTAA 7 cut(s) 204, 426, 621, 753, 807, 1052, 1282
Sau3AI GATC 7 cut(s) 54, 336, 655, 865, 936, 1156, 1253
Sau96I GGNCC 5 cut(s) 127, 154, 211, 231, 268
ScaI AGTACT 1 cut(s) 1032
ScrFI CCNGG 4 cut(s) 52, 209, 257, 266
SduI GDGCHC 4 cut(s) 150, 297, 567, 710
SfaNI GCATC 2 cut(s) 13, 1205
Sfr303I CCGCGG 1 cut(s) 193
SgrBI CCGCGG 1 cut(s) 193
SinI GGWCC 3 cut(s) 127, 154, 211
SmiMI CAYNNNNRTG 2 cut(s) 9, 713
SmlI CTYRAG 2 cut(s) 557, 1149
SmoI CTYRAG 2 cut(s) 557, 1149
Sse9I AATT 4 cut(s) 201, 423, 550, 896
SspMI CTAG 2 cut(s) 977, 1082
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 4 cut(s) 50, 207, 255, 264
StyI CCWWGG 3 cut(s) 150, 645, 1230
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 4 cut(s) 164, 375, 605, 654
TaqI TCGA 9 cut(s) 186, 345, 450, 525, 612, 868, 994, 1078, 1261
TasI AATT 4 cut(s) 201, 423, 550, 896
TatI WGTACW 1 cut(s) 1030
TfiI GAWTC 3 cut(s) 522, 964, 1275
Tru1I TTAA 7 cut(s) 204, 426, 621, 753, 807, 1052, 1282
Tru9I TTAA 7 cut(s) 204, 426, 621, 753, 807, 1052, 1282
TscAI CASTG 2 cut(s) 440, 1140
TseFI GTSAC 3 cut(s) 659, 797, 1225
TseI GCWGC 2 cut(s) 438, 1105
Tsp45I GTSAC 3 cut(s) 659, 797, 1225
TspDTI ATGAA 4 cut(s) 909, 927, 977, 1053
TspGWI ACGGA 2 cut(s) 305, 571
TspRI CASTG 2 cut(s) 440, 1140
Van91I CCANNNNNTGG 1 cut(s) 123
VneI GTGCAC 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 127, 154, 211
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 1 cut(s) 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 2 cut(s) 99, 450
XmnI GAANNNNTTC 2 cut(s) 603, 1044
XspI CTAG 2 cut(s) 977, 1082
ZrmI AGTACT 1 cut(s) 1032
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.