Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008018

Physical Location & Seq

Genomic Coordinates Forward (+)

56808299 .. 56809955

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0479300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGACCATTCTTTCGTCGGAGACCATGGACATTCCCGACGGGGTGAAGATCAAGGTCCACGCGAAGATCATCGAGGTGGAAGGCCCACGCGGCAAGCTCCTCATCAAGGACGAGGAGACCGGCCAGCGCAAGCTCAAGATCGAGGCATGGTTCGGCACTCGCAAGACCAGCGCCGCCATCAGGACCGCCCTCTCGCACGTCGAGAATCTCATCACCGGAGTCACCAAGGGGTACCGGTACAAGATGAGGTTCGTGTACGCTCATTTTCCCATCAACGCTTCGATCACTAATGGAGCTAAGTCGATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGGTGAGAAAGGTGGATATGCTTGATGGTGTTTCTATCCTCCGATCTGAGAAGGTGAAGGATGAGCTGATATTGGATGGCAATGATATTGAACTTGTTTCTCGGTCTTGTGCTCTGATCAACCAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAGGGCAACCATCAATACCGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0008283 GO:0009266 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030029 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090351 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

182

Amino Acids

20.59

Weight (kDa)

9.45

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	12 - 78	4.2e-07	Ribosomal protein L6
Ribosomal_L6	PF00347	100 - 169	3e-11	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G33520
fragaria_vesca	FvH4_1g02800 FvH4_1g02800
malus_domestica	MD02G1028000.v1.1 MD15G1169700.v1.1
prunus_persica	Prupe.7G246800_v2.0.a1
pyrus_communis	pycom02g02300 pycom15g15130
rosa_chinensis	RchiOBHm_Chr2g0087891
rosa_laevigata	RLG00000015910
rosa_multiflora	Rmu_co8205590.1_g000001 Rmu_sc0008385.1_g000022 Rmu_sc0014136.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153140
rosa_rugosa	Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479300
rosa_samantha	Rh2AG034000 Rh2BG033200 Rh2CG033900 Rh2DG033600
rosa_wichuraiana	Rw2G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	234
AccII	CGCG	2 cut(s)	65, 93
AciI	CCGC	3 cut(s)	93, 177, 189
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	3 cut(s)	236, 242, 260
AfiI	CCNNNNNNNGG	2 cut(s)	109, 183
AgeI	ACCGGT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	428
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	4 cut(s)	100, 136, 299, 403
AluI	AGCT	4 cut(s)	100, 136, 299, 403
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	17, 113
AoxI	GGCC	2 cut(s)	85, 124
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	132, 176
AspS9I	GGNCC	3 cut(s)	58, 86, 186
AsuHPI	GGTGA	6 cut(s)	58, 208, 217, 341, 352, 403
AvaII	GGWCC	2 cut(s)	58, 186
BanI	GGYRCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	6 cut(s)	188, 281, 356, 407, 497, 539
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	17, 113
BfoI	RGCGCY	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	94, 177
BlsI	GCNGC	2 cut(s)	95, 178
Bme18I	GGWCC	2 cut(s)	58, 186
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	58, 86, 186
BmiI	GGNNCC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	311
BsaI	GGTCTC	2 cut(s)	17, 113
BsaJI	CCNNGG	3 cut(s)	27, 228, 540
BsaWI	WCCGGW	2 cut(s)	218, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 183
Bse118I	RCCGGY	2 cut(s)	122, 237
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	27, 228, 540
BseGI	GGATG	2 cut(s)	403, 418
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	109, 183
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	375
BseRI	GAGGAG	2 cut(s)	92, 131
Bsh1236I	CGCG	2 cut(s)	65, 93
BshFI	GGCC	2 cut(s)	87, 126
BshNI	GGYRCC	1 cut(s)	234
BshTI	ACCGGT	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	3 cut(s)	123, 219, 238
BslI	CCNNNNNNNGG	2 cut(s)	109, 183
BsmAI	GTCTC	2 cut(s)	17, 113
BsnI	GGCC	2 cut(s)	87, 126
Bso31I	GGTCTC	2 cut(s)	17, 113
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	93, 177, 189
BspANI	GGCC	2 cut(s)	87, 126
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	2 cut(s)	65, 93
BspLI	GGNNCC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	234
BspTNI	GGTCTC	2 cut(s)	17, 113
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	2 cut(s)	122, 237
BssAI	RCCGGY	2 cut(s)	122, 237
BssECI	CCNNGG	3 cut(s)	27, 228, 540
BssMI	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
BssT1I	CCWWGG	2 cut(s)	27, 228
BstC8I	GCNNGC	3 cut(s)	98, 128, 134
BstDEI	CTNAG	2 cut(s)	300, 384
BstDSI	CCRYGG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	403, 418
BstFNI	CGCG	2 cut(s)	65, 93
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	132, 176
BstKTI	GATC	7 cut(s)	54, 72, 144, 288, 315, 383, 456
BstMAI	GTCTC	2 cut(s)	17, 113
BstMBI	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 171
BstUI	CGCG	2 cut(s)	65, 93
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	87, 126
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	403, 418
Cac8I	GCNNGC	3 cut(s)	98, 128, 134
CfoI	GCGC	2 cut(s)	132, 176
Cfr10I	RCCGGY	2 cut(s)	122, 237
Cfr13I	GGNCC	3 cut(s)	58, 86, 186
Csp6I	GTAC	3 cut(s)	235, 241, 259
CspAI	ACCGGT	1 cut(s)	237
CviAII	CATG	3 cut(s)	28, 150, 470
CviJI	RGCY	6 cut(s)	87, 100, 126, 136, 299, 403
CviKI_1	RGCY	6 cut(s)	87, 100, 126, 136, 299, 403
CviQI	GTAC	3 cut(s)	235, 241, 259
DdeI	CTNAG	2 cut(s)	300, 384
DpnI	GATC	7 cut(s)	53, 71, 143, 287, 314, 382, 455
DpnII	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
EaeI	YGGCCR	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	27, 228
Eco31I	GGTCTC	2 cut(s)	17, 113
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	58, 186
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	27, 228
ErhI	CCWWGG	2 cut(s)	27, 228
FaeI	CATG	3 cut(s)	31, 153, 473
FaiI	YATR	5 cut(s)	29, 151, 356, 471, 513
FatI	CATG	3 cut(s)	27, 149, 469
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	94, 177
FokI	GGATG	2 cut(s)	410, 425
Fsp4HI	GCNGC	2 cut(s)	94, 177
GlaI	GCGC	2 cut(s)	131, 175
GluI	GCNGC	2 cut(s)	94, 177
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	87, 126
HapII	CCGG	3 cut(s)	123, 219, 238
HhaI	GCGC	2 cut(s)	132, 176
Hin1II	CATG	3 cut(s)	31, 153, 473
Hin6I	GCGC	2 cut(s)	130, 174
HinP1I	GCGC	2 cut(s)	130, 174
HinfI	GANTC	2 cut(s)	208, 222
HpaII	CCGG	3 cut(s)	123, 219, 238
HphI	GGTGA	6 cut(s)	58, 208, 217, 341, 352, 403
Hpy166II	GTNNAC	2 cut(s)	61, 259
Hpy188I	TCNGA	4 cut(s)	22, 380, 385, 453
Hpy188III	TCNNGA	8 cut(s)	38, 139, 184, 205, 316, 475, 490, 500
Hpy8I	GTNNAC	2 cut(s)	61, 259
Hpy99I	CGWCG	3 cut(s)	22, 44, 206
HpyAV	CCTTC	4 cut(s)	77, 331, 382, 388
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 171
HpyF3I	CTNAG	2 cut(s)	300, 384
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	31, 153, 473
HspAI	GCGC	2 cut(s)	130, 174
KpnI	GGTACC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
LmnI	GCTCC	2 cut(s)	105, 296
LpnPI	CCDG	9 cut(s)	136, 140, 169, 184, 232, 251, 301, 473, 475
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	7 cut(s)	53, 71, 143, 287, 314, 382, 455
MboI	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
MboII	GAAGA	4 cut(s)	16, 61, 79, 346
MhlI	GDGCHC	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	9 cut(s)	70, 109, 113, 139, 203, 243, 386, 516, 535
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	3 cut(s)	123, 219, 238
MvnI	CGCG	2 cut(s)	65, 93
MwoI	GCNNNNNNNGC	2 cut(s)	93, 171
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
NlaIII	CATG	3 cut(s)	31, 153, 473
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	208
PinAI	ACCGGT	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	95, 178
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	58, 86, 186
RsaI	GTAC	3 cut(s)	236, 242, 260
RsaNI	GTAC	3 cut(s)	235, 241, 259
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	2 cut(s)	94, 177
Sau3AI	GATC	7 cut(s)	51, 69, 141, 285, 312, 380, 453
Sau96I	GGNCC	3 cut(s)	58, 86, 186
SchI	GAGTC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	451
SinI	GGWCC	2 cut(s)	58, 186
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	3 cut(s)	93, 177, 189
StyI	CCWWGG	2 cut(s)	27, 228
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	5 cut(s)	75, 144, 204, 284, 305
TaqII	GACCGA	1 cut(s)	429
TauI	GCSGC	2 cut(s)	96, 179
TfiI	GAWTC	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	58, 186
XagI	CCTNNNNNAGG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.