Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8205590.1

Orthogroup ID

OG0008018

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 708

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8205590.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 680 bp

atgcaccaaaacggcgtcgttgttctcgacaacggcggcggcctaatcaaagccgggtacggcggcgagcgcgaccccgccgccataatccccaactgcgtctaccgccctctctcctccaagaaatggctcaccccttcccccaccgaccccatcgacctcacctccgccgccgtccgccgccccatcgaccgcggctaccttatcaacccggacctccagcgcgagatctgggcccacctcttctcccaagtcctccgggtcaacccggcccaatcctccctcctcctgaccgagcccctcttcaccctcccctccatccaacgcgccgccgacgagctcgtcttcgaggacttcaacttcgccgccctctacgtggcccacgcgccgtcgctggcccacctctacgaggccagccgccggcccgttaaggcccaatgcagcctcgtcgtcgattgtggattctcgttcacccacgccgtgccggtgttccagaactttccgatcaactacgccgcgaagagaattgacctcgggggaaaggcgttgaccaattacctcaaggagctcgtttcgtaccgctctgtgaatgttatggacgaaacgtttcttattgacgatgtgaaggagaagctctgctttgtctccatgaatgtgactcgtgacctccagattgcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0008283 GO:0009266 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030029 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090351 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

226

Amino Acids

25.12

Weight (kDa)

6.51

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G33520
fragaria_vesca	FvH4_1g02800 FvH4_1g02800
malus_domestica	MD02G1028000.v1.1 MD15G1169700.v1.1
prunus_persica	Prupe.7G246800_v2.0.a1
pyrus_communis	pycom02g02300 pycom15g15130
rosa_chinensis	RchiOBHm_Chr2g0087891
rosa_laevigata	RLG00000015910
rosa_multiflora	Rmu_co8205590.1_g000001 Rmu_sc0008385.1_g000022 Rmu_sc0014136.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153140
rosa_rugosa	Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479200 Rorug01G0479300
rosa_samantha	Rh2AG034000 Rh2BG033200 Rh2CG033900 Rh2DG033600
rosa_wichuraiana	Rw2G002670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
AclI	AACGTT	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	15
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	2 cut(s)	59, 578
AfiI	CCNNNNNNNGG	4 cut(s)	126, 376, 409, 420
AgsI	TTSAA	1 cut(s)	358
AluBI	AGCT	3 cut(s)	340, 568, 634
AluI	AGCT	3 cut(s)	340, 568, 634
Alw21I	GWGCWC	2 cut(s)	342, 570
Alw26I	GTCTC	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	8 cut(s)	40, 234, 270, 378, 396, 411, 422, 432
ApaI	GGGCCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	4 cut(s)	72, 225, 329, 388
AspS9I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
AsuC2I	CCSGG	4 cut(s)	55, 212, 260, 269
AsuHPI	GGTGA	4 cut(s)	124, 154, 298, 463
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	238
BanII	GRGCYC	4 cut(s)	238, 300, 342, 570
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	2 cut(s)	342, 570
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	3 cut(s)	161, 194, 326
BceAI	ACGGC	6 cut(s)	28, 49, 76, 158, 373, 464
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BcnI	CCSGG	4 cut(s)	55, 212, 260, 269
BcoDI	GTCTC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	228
Bme1390I	CCNGG	4 cut(s)	55, 212, 260, 269
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	4 cut(s)	55, 212, 260, 269
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	2 cut(s)	203, 653
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	4 cut(s)	55, 212, 260, 269
BsaAI	YACGTR	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	193, 532
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 230, 260
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 376, 409, 420
Bse118I	RCCGGY	2 cut(s)	420, 484
BseDI	CCNNGG	2 cut(s)	193, 532
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	4 cut(s)	126, 376, 409, 420
BseRI	GAGGAG	2 cut(s)	106, 275
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	453
Bsh1236I	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	8 cut(s)	42, 236, 272, 380, 398, 413, 424, 434
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	2 cut(s)	342, 570
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
BslI	CCNNNNNNNGG	4 cut(s)	126, 376, 409, 420
BsmAI	GTCTC	1 cut(s)	649
BsnI	GGCC	8 cut(s)	42, 236, 272, 380, 398, 413, 424, 434
BsoBI	CYCGRG	1 cut(s)	533
Bsp120I	GGGCCC	1 cut(s)	234
Bsp1286I	GDGCHC	4 cut(s)	238, 300, 342, 570
Bsp143I	GATC	2 cut(s)	228, 504
BspANI	GGCC	8 cut(s)	42, 236, 272, 380, 398, 413, 424, 434
BspFNI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
BspLI	GGNNCC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	582
BsrFI	RCCGGY	2 cut(s)	420, 484
BssAI	RCCGGY	2 cut(s)	420, 484
BssECI	CCNNGG	2 cut(s)	193, 532
BssMI	GATC	2 cut(s)	228, 504
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst6I	CTCTTC	3 cut(s)	248, 308, 515
BstACI	GRCGYC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	4 cut(s)	68, 396, 415, 422
BstDSI	CCRYGG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
BstHHI	GCGC	4 cut(s)	72, 225, 329, 388
BstKTI	GATC	2 cut(s)	231, 507
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	2 cut(s)	228, 504
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 105
BstSCI	CCNGG	4 cut(s)	53, 210, 258, 267
BstSLI	GKGCMC	1 cut(s)	238
BstUI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
BstV1I	GCAGC	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	8 cut(s)	42, 236, 272, 380, 398, 413, 424, 434
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	68, 396, 415, 422
CfoI	GCGC	4 cut(s)	72, 225, 329, 388
Cfr10I	RCCGGY	2 cut(s)	420, 484
Cfr13I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
Cfr42I	CCGCGG	1 cut(s)	196
CseI	GACGC	2 cut(s)	4, 88
Csp6I	GTAC	2 cut(s)	58, 577
CviAII	CATG	1 cut(s)	649
CviQI	GTAC	2 cut(s)	58, 577
DpnI	GATC	2 cut(s)	230, 506
DpnII	GATC	2 cut(s)	228, 504
DraIII	CACNNNGTG	1 cut(s)	481
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	3 cut(s)	248, 308, 515
EarI	CTCTTC	3 cut(s)	248, 308, 515
EciI	GGCGGA	2 cut(s)	157, 167
Ecl136II	GAGCTC	2 cut(s)	340, 568
Eco24I	GRGCYC	4 cut(s)	238, 300, 342, 570
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	2 cut(s)	340, 568
Eco88I	CYCGRG	1 cut(s)	533
EcoICRI	GAGCTC	2 cut(s)	340, 568
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoT38I	GRGCYC	4 cut(s)	238, 300, 342, 570
FaeI	CATG	1 cut(s)	652
FaiI	YATR	3 cut(s)	86, 596, 650
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FatI	CATG	1 cut(s)	648
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	102
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	4 cut(s)	238, 300, 342, 570
GlaI	GCGC	4 cut(s)	71, 224, 328, 387
GsuI	CTGGAG	2 cut(s)	203, 653
HaeIII	GGCC	8 cut(s)	42, 236, 272, 380, 398, 413, 424, 434
HapII	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
HgaI	GACGC	2 cut(s)	4, 88
HhaI	GCGC	4 cut(s)	72, 225, 329, 388
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	652
Hin6I	GCGC	4 cut(s)	70, 223, 327, 386
HinP1I	GCGC	4 cut(s)	70, 223, 327, 386
HincII	GTYRAC	2 cut(s)	265, 549
HindII	GTYRAC	2 cut(s)	265, 549
HinfI	GANTC	2 cut(s)	462, 658
HpaII	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
HphI	GGTGA	4 cut(s)	124, 154, 298, 463
Hpy166II	GTNNAC	4 cut(s)	103, 265, 471, 549
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	5 cut(s)	26, 289, 493, 662, 670
Hpy8I	GTNNAC	4 cut(s)	103, 265, 471, 549
Hpy99I	CGWCG	5 cut(s)	20, 338, 394, 452, 455
HpyAV	CCTTC	2 cut(s)	147, 619
HpyCH4IV	ACGT	2 cut(s)	375, 605
HpyCH4V	TGCA	3 cut(s)	4, 441, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 105
HpySE526I	ACGT	2 cut(s)	375, 605
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	652
HspAI	GCGC	4 cut(s)	70, 223, 327, 386
KroI	GCCGGC	1 cut(s)	420
KroNI	GCCGGC	1 cut(s)	422
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	228, 504
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	1 cut(s)	453
MaeII	ACGT	2 cut(s)	375, 605
MaeIII	GTNAC	2 cut(s)	655, 662
MalI	GATC	2 cut(s)	230, 506
MbiI	CCGCTC	1 cut(s)	582
MboI	GATC	2 cut(s)	228, 504
MboII	GAAGA	4 cut(s)	235, 295, 337, 532
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	4 cut(s)	238, 300, 342, 570
MluCI	AATT	2 cut(s)	525, 553
MlyI	GAGTC	1 cut(s)	652
MmeI	TCCRAC	1 cut(s)	346
MroNI	GCCGGC	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	6 cut(s)	54, 212, 259, 269, 421, 485
MspR9I	CCNGG	4 cut(s)	55, 212, 260, 269
MvnI	CGCG	6 cut(s)	72, 195, 225, 327, 386, 518
MwoI	GCNNNNNNNGC	2 cut(s)	69, 105
NaeI	GCCGGC	1 cut(s)	422
NciI	CCSGG	4 cut(s)	55, 212, 260, 269
NdeII	GATC	2 cut(s)	228, 504
NgoMIV	GCCGGC	1 cut(s)	420
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	655, 662
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	462
PflMI	CCANNNNNTGG	1 cut(s)	126
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
Ppu21I	YACGTR	1 cut(s)	376
Psp124BI	GAGCTC	2 cut(s)	342, 570
Psp1406I	AACGTT	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	236
PspOMI	GGGCCC	1 cut(s)	234
PspPI	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	59, 578
RsaNI	GTAC	2 cut(s)	58, 577
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	2 cut(s)	342, 570
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	228, 504
Sau96I	GGNCC	8 cut(s)	214, 234, 235, 271, 379, 397, 423, 433
SchI	GAGTC	1 cut(s)	652
ScrFI	CCNGG	4 cut(s)	55, 212, 260, 269
SduI	GDGCHC	4 cut(s)	238, 300, 342, 570
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	2 cut(s)	525, 553
SstI	GAGCTC	2 cut(s)	342, 570
StyD4I	CCNGG	4 cut(s)	53, 210, 258, 267
TaiI	ACGT	2 cut(s)	378, 608
TaqI	TCGA	5 cut(s)	27, 156, 189, 348, 453
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	2 cut(s)	525, 553
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	655, 662
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	2 cut(s)	655, 662
TspDTI	ATGAA	1 cut(s)	665
Van91I	CCANNNNNTGG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.