Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Forward (+)

14722250 .. 14723919

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G42630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTTGTCGCTCAATCTATCTTTGAAACCCCAACATCTCAAGCTCTTATCTTGTTACACGGATTCGTCTGCTCCTTCAATCGCGAAAAAGTTGATCAAGGAATCAAAGCTATCTAGGGACTTCAGTCAAAAGATACAAATCGTAGACTACGCTCCATTAGTTCAAACTTTAAGCCAGAGAAGATTACCTGATGTAGCTCATGAGATTTTTCTCCAAACGAAATCAGTTAACTTGTTACCAAATTACAGAACCCTTTGTGCTCTTATGCTTTGTTTTGCTGAAAATGGGTTTGTTCTTCGAGCACGTACGATTTGGGATGAGATTATAAACAGTTGTTTTGTACCTGATGTCTTTGTAGTCTCTAAGCTTATATCTGCTTATGAGCAATTTGGTTGTTTTGATGAAGTTGCCAAGATCACCAAGGATGTTGCTGCAAGGCACTCGAAGCTTCTTCCGGTTGTGTCTTCACTTGCTATATCCTGTTTTGGTAAGAATGGACAGTTGGAACTGATGGAGGGTGTTATAGAGGAAATGGATTCAAAGGGAGTGTTGTTAGAGGCTGAGACTGCTAATGTGATTGTTAGATACTATAGTTTTTTCGGTAGTTTAGATAAGATGGAGAAGGCTTATGGCCGGGTTAAGAAGTTTGGTATTGTGATAGAGGAAGAAGAGATAAGAGCTGTGGTGTTAGCGTACTTGAAACAACGGAAGTTTTATCGGTTACGCGAGTTTTTGTCAGATGTTGGTCTCGGTAGAAGAAATCTTGGAAATATGTTATGGAATTCTGTATTACTGTCATATGCAGCTGATTTTAAGATGAAAAGCTTGCAGAGAGAGTTTATTGGAATGCTTGATGCGGGTTTCTCTCCTGACCTTACCACCTTTAACATTCGCGCTCTTGCGTTTTCTAGAATGGCTCTCTTCTGGGATCTACATCTCACTCTTGAACATATGAGACGTTTGAACATTGTTCCGGATCTTGTGACTTTCGGATGTGTTGTCGATGCATATATGGATAAGCGACTAGCGAGAAATTTGGAGTTTGTATACAACCGAATGAATCTGGACGATTCTCCTCTTGTCTTAACTGATCCACTTGCATTTGAAGTTCTGGGGAAAGGGGATTTCCATCTTAGCTCGGAAGCTGTTTTGGAGTTCAGTCCACGGAAAAACTGGACGTATAGAAAGCTAATTGGAGTTTATCTCAAGAAAAAGTTGCGGAGAGACCAGATTTTCTGGAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

415

Amino Acids

47.72

Weight (kDa)

9.04

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AccI	GTMKAC	2 cut(s)	144, 1047
AccII	CGCG	3 cut(s)	83, 726, 894
AccIII	TCCGGA	1 cut(s)	973
AciI	CCGC	2 cut(s)	857, 1219
AclWI	GGATC	3 cut(s)	936, 984, 1085
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	2 cut(s)	781, 1033
AcuI	CTGAAG	1 cut(s)	106
AfaI	GTAC	3 cut(s)	307, 342, 695
AgsI	TTSAA	8 cut(s)	25, 78, 164, 540, 700, 947, 964, 1106
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
Alw21I	GWGCWC	2 cut(s)	262, 304
Alw26I	GTCTC	5 cut(s)	364, 557, 752, 949, 1218
AlwI	GGATC	3 cut(s)	936, 984, 1085
Aor13HI	TCCGGA	1 cut(s)	973
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	431, 803
ApoI	RAATTY	2 cut(s)	781, 1033
AspLEI	GCGC	1 cut(s)	896
AsuC2I	CCSGG	1 cut(s)	635
AsuHPI	GGTGA	1 cut(s)	409
BaeI	ACNNNNGTAYC	2 cut(s)	577, 610
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	2 cut(s)	262, 304
BbvI	GCAGC	2 cut(s)	418, 815
BccI	CCATC	3 cut(s)	505, 610, 1137
BcgI	CGANNNNNNTGC	2 cut(s)	423, 457
BclI	TGATCA	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	635
BcoDI	GTCTC	5 cut(s)	364, 557, 752, 949, 1218
BfaI	CTAG	4 cut(s)	114, 909, 1025, 1246
BfmI	CTRYAG	1 cut(s)	589
BisI	GCNGC	2 cut(s)	432, 804
BlsI	GCNGC	2 cut(s)	433, 805
Bme1390I	CCNGG	1 cut(s)	635
BmrFI	CCNGG	1 cut(s)	635
BmsI	GCATC	2 cut(s)	844, 994
BoxI	GACNNNNGTC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	1188, 1220
BpuEI	CTTGAG	2 cut(s)	23, 1190
BpuMI	CCSGG	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	305
BsaBI	GATNNNNATC	3 cut(s)	137, 933, 1128
BsaI	GGTCTC	2 cut(s)	752, 1218
BsaJI	CCNNGG	2 cut(s)	420, 1163
BsaWI	WCCGGW	2 cut(s)	454, 973
Bse1I	ACTGG	1 cut(s)	1178
Bse8I	GATNNNNATC	3 cut(s)	137, 933, 1128
BseAI	TCCGGA	1 cut(s)	973
BseDI	CCNNGG	2 cut(s)	420, 1163
BseGI	GGATG	3 cut(s)	322, 430, 998
BseJI	GATNNNNATC	3 cut(s)	137, 933, 1128
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	1178
BseRI	GAGGAG	1 cut(s)	1065
BseXI	GCAGC	2 cut(s)	418, 815
Bsh1236I	CGCG	3 cut(s)	83, 726, 894
BshFI	GGCC	1 cut(s)	633
BsiHKAI	GWGCWC	2 cut(s)	262, 304
BsiSI	CCGG	3 cut(s)	455, 634, 974
BsiWI	CGTACG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	131
BsmAI	GTCTC	5 cut(s)	364, 557, 752, 949, 1218
BsmBI	CGTCTC	1 cut(s)	949
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	2 cut(s)	752, 1218
Bsp1286I	GDGCHC	2 cut(s)	262, 304
Bsp13I	TCCGGA	1 cut(s)	973
Bsp143I	GATC	5 cut(s)	93, 414, 928, 976, 1090
Bsp68I	TCGCGA	1 cut(s)	83
BspACI	CCGC	2 cut(s)	857, 1219
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	1 cut(s)	553
BspEI	TCCGGA	1 cut(s)	973
BspFNI	CGCG	3 cut(s)	83, 726, 894
BspHI	TCATGA	1 cut(s)	199
BspPI	GGATC	3 cut(s)	936, 984, 1085
BspTNI	GGTCTC	2 cut(s)	752, 1218
BsrI	ACTGG	1 cut(s)	1178
BssECI	CCNNGG	2 cut(s)	420, 1163
BssMI	GATC	5 cut(s)	93, 414, 928, 976, 1090
BssNAI	GTATAC	1 cut(s)	1048
BssT1I	CCWWGG	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	1048
Bst4CI	ACNGT	3 cut(s)	332, 501, 795
Bst6I	CTCTTC	2 cut(s)	663, 926
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	827
BstDEI	CTNAG	3 cut(s)	363, 561, 1133
BstDSI	CCRYGG	1 cut(s)	1163
BstF5I	GGATG	3 cut(s)	322, 430, 998
BstFNI	CGCG	3 cut(s)	83, 726, 894
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	5 cut(s)	96, 417, 931, 979, 1093
BstMAI	GTCTC	5 cut(s)	364, 557, 752, 949, 1218
BstMBI	GATC	5 cut(s)	93, 414, 928, 976, 1090
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 566
BstPAI	GACNNNNGTC	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	1 cut(s)	589
BstUI	CGCG	3 cut(s)	83, 726, 894
BstV1I	GCAGC	2 cut(s)	418, 815
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	928, 976
BstYI	RGATCY	2 cut(s)	928, 976
BstZ17I	GTATAC	1 cut(s)	1048
BsuRI	GGCC	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	1163
BtsCI	GGATG	3 cut(s)	322, 430, 998
BtuMI	TCGCGA	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	827
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	896
Csp6I	GTAC	3 cut(s)	306, 341, 694
CviAII	CATG	1 cut(s)	200
CviQI	GTAC	3 cut(s)	306, 341, 694
DdeI	CTNAG	3 cut(s)	363, 561, 1133
DpnI	GATC	5 cut(s)	95, 416, 930, 978, 1092
DpnII	GATC	5 cut(s)	93, 414, 928, 976, 1090
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	663, 926
EarI	CTCTTC	2 cut(s)	663, 926
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	752, 1218
Eco57I	CTGAAG	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	1009
ErhI	CCWWGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	949
FaeI	CATG	1 cut(s)	203
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	199
FauI	CCCGC	1 cut(s)	850
FauNDI	CATATG	2 cut(s)	799, 951
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	2 cut(s)	144, 1047
Fnu4HI	GCNGC	2 cut(s)	432, 804
FokI	GGATG	3 cut(s)	329, 437, 1005
Fsp4HI	GCNGC	2 cut(s)	432, 804
FspBI	CTAG	4 cut(s)	114, 909, 1025, 1246
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	2 cut(s)	432, 804
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	3 cut(s)	455, 634, 974
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	3 cut(s)	365, 446, 823
HinfI	GANTC	5 cut(s)	62, 101, 536, 1060, 1070
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	455, 634, 974
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	4 cut(s)	145, 229, 1048, 1163
Hpy188I	TCNGA	3 cut(s)	739, 992, 1141
Hpy188III	TCNNGA	9 cut(s)	82, 200, 869, 909, 944, 974, 1064, 1207, 1237
Hpy8I	GTNNAC	4 cut(s)	145, 229, 1048, 1163
HpyAV	CCTTC	2 cut(s)	84, 616
HpyCH4III	ACNGT	3 cut(s)	332, 501, 795
HpyCH4IV	ACGT	3 cut(s)	304, 958, 1178
HpyCH4V	TGCA	5 cut(s)	434, 803, 829, 1007, 1100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 566
HpyF3I	CTNAG	3 cut(s)	363, 561, 1133
HpySE526I	ACGT	3 cut(s)	304, 958, 1178
Hsp92II	CATG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	894
Kpn2I	TCCGGA	1 cut(s)	973
Ksp22I	TGATCA	1 cut(s)	93
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	93, 414, 928, 976, 1090
LmnI	GCTCC	2 cut(s)	76, 157
Lsp1109I	GCAGC	2 cut(s)	418, 815
LweI	GCATC	2 cut(s)	844, 994
MaeI	CTAG	4 cut(s)	114, 909, 1025, 1246
MaeII	ACGT	3 cut(s)	304, 958, 1178
MaeIII	GTNAC	4 cut(s)	53, 234, 720, 982
MalI	GATC	5 cut(s)	95, 416, 930, 978, 1092
MboI	GATC	5 cut(s)	93, 414, 928, 976, 1090
MboII	GAAGA	8 cut(s)	192, 287, 443, 456, 677, 680, 768, 913
MflI	RGATCY	2 cut(s)	928, 976
MhlI	GDGCHC	2 cut(s)	262, 304
MluCI	AATT	6 cut(s)	241, 386, 781, 1033, 1191, 1240
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	5 cut(s)	508, 520, 550, 655, 1086
Mph1103I	ATGCAT	1 cut(s)	1009
MroI	TCCGGA	1 cut(s)	973
MseI	TTAA	6 cut(s)	170, 228, 639, 813, 885, 1085
MspA1I	CMGCKG	1 cut(s)	806
MspI	CCGG	3 cut(s)	455, 634, 974
MspR9I	CCNGG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	852
MvnI	CGCG	3 cut(s)	83, 726, 894
MwoI	GCNNNNNNNGC	2 cut(s)	445, 566
NciI	CCSGG	1 cut(s)	635
NdeI	CATATG	2 cut(s)	799, 951
NdeII	GATC	5 cut(s)	93, 414, 928, 976, 1090
NlaIII	CATG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	982
NruI	TCGCGA	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	1009
PagI	TCATGA	1 cut(s)	199
PctI	GAATGC	1 cut(s)	852
PfeI	GAWTC	5 cut(s)	62, 101, 536, 1060, 1070
Pfl23II	CGTACG	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	433, 805
Ppu21I	YACGTR	1 cut(s)	305
PshAI	GACNNNNGTC	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	326
PspLI	CGTACG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	928, 976
PvuII	CAGCTG	1 cut(s)	806
RruI	TCGCGA	1 cut(s)	83
RsaI	GTAC	3 cut(s)	307, 342, 695
RsaNI	GTAC	3 cut(s)	306, 341, 694
SaqAI	TTAA	6 cut(s)	170, 228, 639, 813, 885, 1085
SatI	GCNGC	2 cut(s)	432, 804
Sau3AI	GATC	5 cut(s)	93, 414, 928, 976, 1090
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	2 cut(s)	262, 304
SfaNI	GCATC	2 cut(s)	844, 994
SfcI	CTRYAG	1 cut(s)	589
SmlI	CTYRAG	2 cut(s)	38, 1205
SmoI	CTYRAG	2 cut(s)	38, 1205
Sse9I	AATT	6 cut(s)	241, 386, 781, 1033, 1191, 1240
SsiI	CCGC	2 cut(s)	857, 1219
SspMI	CTAG	4 cut(s)	114, 909, 1025, 1246
StyD4I	CCNGG	1 cut(s)	633
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	3 cut(s)	332, 501, 795
TaiI	ACGT	3 cut(s)	307, 961, 1181
TaqI	TCGA	3 cut(s)	298, 443, 1002
TasI	AATT	6 cut(s)	241, 386, 781, 1033, 1191, 1240
TfiI	GAWTC	5 cut(s)	62, 101, 536, 1060, 1070
Tru1I	TTAA	6 cut(s)	170, 228, 639, 813, 885, 1085
Tru9I	TTAA	6 cut(s)	170, 228, 639, 813, 885, 1085
TseFI	GTSAC	1 cut(s)	982
TseI	GCWGC	2 cut(s)	431, 803
Tsp45I	GTSAC	1 cut(s)	982
TspDTI	ATGAA	3 cut(s)	417, 833, 1073
TspGWI	ACGGA	3 cut(s)	74, 721, 1180
XapI	RAATTY	2 cut(s)	781, 1033
XbaI	TCTAGA	1 cut(s)	908
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1170
XmiI	GTMKAC	2 cut(s)	144, 1047
XspI	CTAG	4 cut(s)	114, 909, 1025, 1246
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.