Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Forward (+)

2488731 .. 2491020

Gene Structure 2290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1028400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAGGTCACGGTTCTTCTGAGCCCAATACGTGCTTCAGCTTCTCTCAACCCAAATCGAGCCTTAGCACGCAAGATAATCCGGAAATGGAAGCGGGATGAGTGTTTTAATGGCCAAGCTACTTATGTAGATTGCGTGCGGATAATTCGGAGTTTAAGTAGGCAAAAGTTGCCTCATGTAGCTCAGGAGCTTTTACTCGAAATGAAATCAGATGGTCTTTTGCCCAGCAACTCCACTCTATCTGCTTTGATGCTGTGCCATGCCAACAATGGCCTTTTTCCTCAAGCGGAAGAAGTGTGGAACGAACTGTTACATACTTCTTTTGTGCCTAGTACTCAAGTTGTTTCGCAGTTATTTGATGTTTATGGAAATGCGGGATGTTTTGAAAAAGTGAATGAAATTTTGGGCCAGCTGAGGGCTAGGAGGTATTTGAGTTTGTTTCCGGAGGTTTACTCGCTAGCTATCGCTTGTTTTGGGAAGGGAGGCCAGCTTGAATTGATGGAAGGTGCATTGAAAGAAATGATTTCAATGGGGTTCCCGGTGGACTCTGCCACTGGAAATGCCTTTATCAGATACTATAGCATTTTTGGTTCCCTGACTGAGATGGAGACCGCTTATGGCCACCTTAAAAGGTCTAGGTTTCTGATAGAGGAAGAGGGAATCCGGGCAATGTCATTTGCGTATCTGAAGCGCAGGAAGTTTTACGGATTAGCTGAGTTCCTGAAGGATGTAGGTCTAGGTAGAAGAAACTTGGGAAATCTTCTGTGGAACCTTTTGTTGTTATCCTATGCCGTGAATTTTAAGATGAAAAGCTTACAAAGAGAATTTTTGAGAATGGTGGAAGCTGGTTTCCACCCCGATCTTACTACATTTAATATCCGTGCTCTGGCCTTTTCAAAGATGTCTCTACTGTGGGATCTCCATCTTAGCCTTGAACACATGAAACATGAGAAAGTTGTTCCCGATCTTGTGACTTGCGGCTGTGTTGTTGATGCATACTTGGATAGAAGACTAGGACGGAATTTGTATTTTGCCCTCAATAAAATGAATTTGGATGATTCCCCATTGGTATTAACGGATCCATTTGTGTTTGAAGTTTTGGGAAAAGGAGACTTTCATGCAAGCTCAGAGGCATTTTTGGAGTTCCAGAGGCAAAGGGAATGGACTTATAGGAAGTTAATTTCAGTATATATGAAAAAAACATACCGGAGGAATCAGATCTTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

412

Amino Acids

47.33

Weight (kDa)

9.16

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	81, 442
AciI	CCGC	6 cut(s)	94, 139, 287, 374, 612, 978
AclWI	GGATC	3 cut(s)	924, 1073, 1086
AcoI	YGGCCR	2 cut(s)	112, 619
AcsI	RAATTY	5 cut(s)	399, 796, 824, 1021, 1048
AcuI	CTGAAG	3 cut(s)	21, 707, 743
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	415, 886
AgsI	TTSAA	7 cut(s)	386, 494, 514, 528, 897, 935, 1094
AjuI	GAANNNNNNNTTGG	4 cut(s)	19, 51, 386, 418
Alw21I	GWGCWC	1 cut(s)	886
Alw26I	GTCTC	3 cut(s)	602, 909, 1104
AlwI	GGATC	3 cut(s)	924, 1073, 1086
Aor13HI	TCCGGA	2 cut(s)	81, 442
AoxI	GGCC	6 cut(s)	112, 271, 406, 484, 619, 888
ApoI	RAATTY	5 cut(s)	399, 796, 824, 1021, 1048
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	2 cut(s)	539, 665
AsuNHI	GCTAGC	1 cut(s)	457
BalI	TGGCCA	2 cut(s)	114, 621
BamHI	GGATCC	1 cut(s)	1078
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	1015
Bbv12I	GWGCWC	1 cut(s)	886
BbvCI	CCTCAGC	1 cut(s)	413
BccI	CCATC	4 cut(s)	206, 493, 598, 930
BceAI	ACGGC	1 cut(s)	776
BcnI	CCSGG	2 cut(s)	539, 665
BcoDI	GTCTC	3 cut(s)	602, 909, 1104
BfaI	CTAG	6 cut(s)	330, 420, 458, 636, 737, 1013
BfmI	CTRYAG	1 cut(s)	577
BglII	AGATCT	1 cut(s)	1218
BisI	GCNGC	1 cut(s)	979
BlsI	GCNGC	1 cut(s)	980
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	539, 665
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	4 cut(s)	536, 592, 770, 1080
BmrFI	CCNGG	2 cut(s)	539, 665
BmsI	GCATC	2 cut(s)	240, 982
BmtI	GCTAGC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	1015
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
Bpu10I	CCTNAGC	3 cut(s)	64, 183, 413
BpuEI	CTTGAG	2 cut(s)	267, 321
BpuMI	CCSGG	2 cut(s)	539, 665
BsaAI	YACGTR	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	602
BsaWI	WCCGGW	3 cut(s)	81, 442, 1206
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 886
Bse1I	ACTGG	1 cut(s)	559
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	921
BseAI	TCCGGA	2 cut(s)	81, 442
BseGI	GGATG	4 cut(s)	103, 383, 733, 1060
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	2 cut(s)	415, 886
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	6 cut(s)	11, 197, 404, 591, 705, 1140
BseNI	ACTGG	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	6 cut(s)	114, 273, 408, 486, 621, 890
BsiHKAI	GWGCWC	1 cut(s)	886
BsiSI	CCGG	5 cut(s)	82, 443, 539, 664, 1207
BslI	CCNNNNNNNGG	2 cut(s)	415, 886
BsmAI	GTCTC	3 cut(s)	602, 909, 1104
BsnI	GGCC	6 cut(s)	114, 273, 408, 486, 621, 890
Bso31I	GGTCTC	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	26, 886
Bsp13I	TCCGGA	2 cut(s)	81, 442
Bsp143I	GATC	5 cut(s)	859, 916, 964, 1078, 1218
BspACI	CCGC	6 cut(s)	94, 139, 287, 374, 612, 978
BspANI	GGCC	6 cut(s)	114, 273, 408, 486, 621, 890
BspCNI	CTCAG	6 cut(s)	12, 196, 405, 592, 706, 1139
BspEI	TCCGGA	2 cut(s)	81, 442
BspLI	GGNNCC	4 cut(s)	536, 592, 770, 1080
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	3 cut(s)	924, 1073, 1086
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	559
BssMI	GATC	5 cut(s)	859, 916, 964, 1078, 1218
Bst4CI	ACNGT	3 cut(s)	13, 309, 912
Bst6I	CTCTTC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	6 cut(s)	70, 137, 410, 459, 488, 1123
BstDEI	CTNAG	8 cut(s)	20, 64, 183, 413, 600, 714, 926, 1126
BstF5I	GGATG	4 cut(s)	103, 383, 733, 1060
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	5 cut(s)	862, 919, 967, 1081, 1221
BstMAI	GTCTC	3 cut(s)	602, 909, 1104
BstMBI	GATC	5 cut(s)	859, 916, 964, 1078, 1218
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	537, 663
BstSFI	CTRYAG	1 cut(s)	577
BstV2I	GAAGAC	1 cut(s)	1015
BstX2I	RGATCY	3 cut(s)	916, 1078, 1218
BstYI	RGATCY	3 cut(s)	916, 1078, 1218
BsuRI	GGCC	6 cut(s)	114, 273, 408, 486, 621, 890
BtsCI	GGATG	4 cut(s)	103, 383, 733, 1060
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	6 cut(s)	70, 137, 410, 459, 488, 1123
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	5 cut(s)	176, 260, 940, 947, 1118
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	8 cut(s)	20, 64, 183, 413, 600, 714, 926, 1126
DpnI	GATC	5 cut(s)	861, 918, 966, 1080, 1220
DpnII	GATC	5 cut(s)	859, 916, 964, 1078, 1218
EaeI	YGGCCR	2 cut(s)	112, 619
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	602
Eco57I	CTGAAG	3 cut(s)	21, 707, 743
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	1 cut(s)	26
FaeI	CATG	5 cut(s)	179, 263, 943, 950, 1121
FatI	CATG	5 cut(s)	175, 259, 939, 946, 1117
FauI	CCCGC	2 cut(s)	87, 367
Fnu4HI	GCNGC	1 cut(s)	979
FokI	GGATG	4 cut(s)	110, 390, 740, 1067
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	979
FspBI	CTAG	6 cut(s)	330, 420, 458, 636, 737, 1013
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	1 cut(s)	979
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	6 cut(s)	114, 273, 408, 486, 621, 890
HapII	CCGG	5 cut(s)	82, 443, 539, 664, 1207
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	5 cut(s)	179, 263, 943, 950, 1121
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	4 cut(s)	545, 660, 1058, 1213
HpaII	CCGG	5 cut(s)	82, 443, 539, 664, 1207
Hpy166II	GTNNAC	2 cut(s)	451, 544
Hpy188I	TCNGA	8 cut(s)	21, 150, 211, 572, 645, 687, 1129, 1218
Hpy188III	TCNNGA	6 cut(s)	82, 185, 443, 721, 962, 1147
Hpy8I	GTNNAC	2 cut(s)	451, 544
HpyAV	CCTTC	3 cut(s)	472, 497, 718
HpyCH4III	ACNGT	3 cut(s)	13, 309, 912
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	509, 995, 1121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	8 cut(s)	20, 64, 183, 413, 600, 714, 926, 1126
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	5 cut(s)	179, 263, 943, 950, 1121
HspAI	GCGC	1 cut(s)	691
Kpn2I	TCCGGA	2 cut(s)	81, 442
Kzo9I	GATC	5 cut(s)	859, 916, 964, 1078, 1218
LmnI	GCTCC	1 cut(s)	187
LweI	GCATC	2 cut(s)	240, 982
MaeI	CTAG	6 cut(s)	330, 420, 458, 636, 737, 1013
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	3 cut(s)	7, 309, 970
MalI	GATC	5 cut(s)	861, 918, 966, 1080, 1220
MboI	GATC	5 cut(s)	859, 916, 964, 1078, 1218
MboII	GAAGA	6 cut(s)	8, 302, 665, 752, 756, 1020
MflI	RGATCY	3 cut(s)	916, 1078, 1218
MhlI	GDGCHC	2 cut(s)	26, 886
MlsI	TGGCCA	2 cut(s)	114, 621
MluCI	AATT	9 cut(s)	144, 399, 494, 796, 824, 1021, 1048, 1179, 1228
MluNI	TGGCCA	2 cut(s)	114, 621
MlyI	GAGTC	1 cut(s)	539
Mox20I	TGGCCA	2 cut(s)	114, 621
Mph1103I	ATGCAT	1 cut(s)	997
MroI	TCCGGA	2 cut(s)	81, 442
MscI	TGGCCA	2 cut(s)	114, 621
MseI	TTAA	7 cut(s)	108, 155, 627, 801, 873, 1073, 1178
Msp20I	TGGCCA	2 cut(s)	114, 621
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	5 cut(s)	82, 443, 539, 664, 1207
MspR9I	CCNGG	2 cut(s)	539, 665
MwoI	GCNNNNNNNGC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	539, 665
NdeII	GATC	5 cut(s)	859, 916, 964, 1078, 1218
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	5 cut(s)	179, 263, 943, 950, 1121
NlaIV	GGNNCC	4 cut(s)	536, 592, 770, 1080
NmuCI	GTSAC	2 cut(s)	7, 970
NsiI	ATGCAT	1 cut(s)	997
PfeI	GAWTC	3 cut(s)	660, 1058, 1213
PkrI	GCNGC	1 cut(s)	980
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Ppu21I	YACGTR	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	536, 592, 770, 1080
PspPI	GGNCC	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	916, 1078, 1218
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	7 cut(s)	108, 155, 627, 801, 873, 1073, 1178
SatI	GCNGC	1 cut(s)	979
Sau3AI	GATC	5 cut(s)	859, 916, 964, 1078, 1218
Sau96I	GGNCC	1 cut(s)	406
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	2 cut(s)	539, 665
SduI	GDGCHC	2 cut(s)	26, 886
SfaNI	GCATC	2 cut(s)	240, 982
SfcI	CTRYAG	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	282, 336
SmoI	CTYRAG	2 cut(s)	282, 336
Sse9I	AATT	9 cut(s)	144, 399, 494, 796, 824, 1021, 1048, 1179, 1228
SsiI	CCGC	6 cut(s)	94, 139, 287, 374, 612, 978
SspMI	CTAG	6 cut(s)	330, 420, 458, 636, 737, 1013
StyD4I	CCNGG	2 cut(s)	537, 663
TaaI	ACNGT	3 cut(s)	13, 309, 912
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	58, 198
TasI	AATT	9 cut(s)	144, 399, 494, 796, 824, 1021, 1048, 1179, 1228
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	981
TfiI	GAWTC	3 cut(s)	660, 1058, 1213
Tru1I	TTAA	7 cut(s)	108, 155, 627, 801, 873, 1073, 1178
Tru9I	TTAA	7 cut(s)	108, 155, 627, 801, 873, 1073, 1178
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	2 cut(s)	7, 970
Tsp45I	GTSAC	2 cut(s)	7, 970
TspDTI	ATGAA	7 cut(s)	218, 411, 821, 956, 1061, 1106, 1208
TspGWI	ACGGA	4 cut(s)	720, 869, 1033, 1091
TspRI	CASTG	1 cut(s)	559
XapI	RAATTY	5 cut(s)	399, 796, 824, 1021, 1048
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XspI	CTAG	6 cut(s)	330, 420, 458, 636, 737, 1013
ZrmI	AGTACT	1 cut(s)	334
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.