Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002729.1

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Reverse (-)

36433 .. 37497

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002729.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgcctcatttagctcaggaggttttacttgagatgaaatcggatggtcttgtgccgagtaactccactctatctgctgtaatgctatgtcatgcaaagaatggccttttccctcaagctgaggcaatttgggatgaaatgttgaacagctcttttgtgcctagtattcaggttgtggcggagctatttgatgtttatggcaatgtgggatgttacggaaaggtgaatgaaattgtgggtcagatcagatcgaggaatttaagtttgtcgccggaggtttactcactagctatctcttgttttgggaagggaggccagcttaaattgatggaagatacattgaaagaaatggtatcaaggggcttcccggtagactcagccactggtaatgtctttattaggtactatagcatttttggttctctgactgagatggagaccgcttatggtcgccttaagaggtccaggtttttgatagaggaagagggaatcagggcaatgtctttggcgtatctaaagaaaaggaagttttatagtttagctgagttcctgaagagtgttggtctaggtagaagaaacttgggaaatcttttatggaacctattgttgctatcctatgctgccaattttaagatgaaaagcttacaaagagaatttctgagaatggtggaagccggattccaccctgatctcactacatttaatattcgtgctctggctttttcaagaatgtctctactctgggatctccatcttactctggaacacatgaaacatgagaaagttgttcctgatcttgttacttgtggttgtgttgttgacgcatacttggatagaagactgggaagaaacttgtattttgctttaaacaaaatgaacttggatggttctccggtagtcttaacagatccatttgtatttgaagttctggggaaaggcgacttccatgcaagctcagaggcatttttggagtttcagaagcagaaggaatggacttataggaagctaatttcagtatatttgaaaaagcaatatcggagggaccagatattttggaattactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

354

Amino Acids

40.52

Weight (kDa)

8.91

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	2 cut(s)	179, 441
AclWI	GGATC	2 cut(s)	753, 902
AcsI	RAATTY	2 cut(s)	256, 653
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	1 cut(s)	404
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	145, 343, 726, 923, 1024
AjnI	CCWGG	1 cut(s)	464
Alw21I	GWGCWC	1 cut(s)	715
Alw26I	GTCTC	2 cut(s)	431, 738
AlwI	GGATC	2 cut(s)	753, 902
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	103, 313
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	2 cut(s)	256, 653
AspS9I	GGNCC	2 cut(s)	462, 1042
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	2 cut(s)	462, 1042
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	1 cut(s)	715
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	5 cut(s)	38, 322, 427, 759, 878
BcgI	CGANNNNNNTGC	2 cut(s)	929, 963
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	431, 738
BfaI	CTAG	3 cut(s)	162, 287, 566
BfmI	CTRYAG	1 cut(s)	406
BfrI	CTTAAG	1 cut(s)	455
BisI	GCNGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	622
Bme1390I	CCNGG	2 cut(s)	368, 466
Bme18I	GGWCC	2 cut(s)	462, 1042
BmgT120I	GGNCC	2 cut(s)	462, 1042
BmiI	GGNNCC	2 cut(s)	599, 1043
BmrFI	CCNGG	2 cut(s)	368, 466
BmrI	ACTGGG	1 cut(s)	851
BmuI	ACTGGG	1 cut(s)	851
BpiI	GAAGAC	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu10I	CCTNAGC	2 cut(s)	15, 120
BpuEI	CTTGAG	2 cut(s)	50, 99
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	750
BsaI	GGTCTC	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	892
Bse1I	ACTGG	2 cut(s)	388, 846
Bse3DI	GCAATG	2 cut(s)	208, 504
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	1 cut(s)	466
BseGI	GGATG	4 cut(s)	49, 139, 215, 889
BseJI	GATNNNNATC	1 cut(s)	750
BseMI	GCAATG	2 cut(s)	208, 504
BseMII	CTCAG	7 cut(s)	29, 111, 390, 420, 534, 650, 969
BseNI	ACTGG	2 cut(s)	388, 846
BseXI	GCAGC	1 cut(s)	607
BshFI	GGCC	2 cut(s)	105, 315
BsiHKAI	GWGCWC	1 cut(s)	715
BsiSI	CCGG	4 cut(s)	272, 368, 675, 893
BslFI	GGGAC	1 cut(s)	1055
BsmAI	GTCTC	2 cut(s)	431, 738
BsmFI	GGGAC	1 cut(s)	1055
BsnI	GGCC	2 cut(s)	105, 315
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	715
Bsp143I	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
BspACI	CCGC	2 cut(s)	179, 441
BspANI	GGCC	2 cut(s)	105, 315
BspCNI	CTCAG	7 cut(s)	28, 112, 389, 421, 535, 651, 968
BspLI	GGNNCC	2 cut(s)	599, 1043
BspPI	GGATC	2 cut(s)	753, 902
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	208, 504
BsrI	ACTGG	2 cut(s)	388, 846
BssMI	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
Bst2UI	CCWGG	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	477, 548
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	317, 952
BstDEI	CTNAG	7 cut(s)	15, 120, 376, 429, 543, 659, 955
BstF5I	GGATG	4 cut(s)	49, 139, 215, 889
BstKTI	GATC	6 cut(s)	246, 251, 691, 748, 796, 910
BstMAI	GTCTC	2 cut(s)	431, 738
BstMBI	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	366, 464
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	2 cut(s)	745, 907
BstYI	RGATCY	2 cut(s)	745, 907
BsuRI	GGCC	2 cut(s)	105, 315
BtsCI	GGATG	4 cut(s)	49, 139, 215, 889
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	317, 952
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	462, 1042
CseI	GACGC	1 cut(s)	830
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	4 cut(s)	92, 769, 776, 947
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	7 cut(s)	15, 120, 376, 429, 543, 659, 955
DpnI	GATC	6 cut(s)	245, 250, 690, 747, 795, 909
DpnII	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
DraI	TTTAAA	1 cut(s)	867
Eam1104I	CTCTTC	2 cut(s)	477, 548
EarI	CTCTTC	2 cut(s)	477, 548
EciI	GGCGGA	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	462, 1042
Eco57I	CTGAAG	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	464
FaeI	CATG	4 cut(s)	95, 772, 779, 950
FaqI	GGGAC	1 cut(s)	1055
FatI	CATG	4 cut(s)	91, 768, 775, 946
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	621
FokI	GGATG	4 cut(s)	56, 146, 222, 896
Fsp4HI	GCNGC	1 cut(s)	621
FspBI	CTAG	3 cut(s)	162, 287, 566
GluI	GCNGC	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	105, 315
HapII	CCGG	4 cut(s)	272, 368, 675, 893
HgaI	GACGC	1 cut(s)	830
Hin1II	CATG	4 cut(s)	95, 772, 779, 950
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	3 cut(s)	374, 489, 678
HpaII	CCGG	4 cut(s)	272, 368, 675, 893
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	280, 373, 820
Hpy188I	TCNGA	8 cut(s)	43, 243, 248, 426, 660, 958, 978, 1038
Hpy188III	TCNNGA	5 cut(s)	17, 550, 726, 761, 791
Hpy8I	GTNNAC	3 cut(s)	280, 373, 820
HpyAV	CCTTC	2 cut(s)	301, 979
HpyCH4V	TGCA	2 cut(s)	95, 950
HpyF3I	CTNAG	7 cut(s)	15, 120, 376, 429, 543, 659, 955
Hsp92II	CATG	4 cut(s)	95, 772, 779, 950
Kzo9I	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	607
MaeI	CTAG	3 cut(s)	162, 287, 566
MaeIII	GTNAC	3 cut(s)	59, 212, 799
MalI	GATC	6 cut(s)	245, 250, 690, 747, 795, 909
MboI	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
MboII	GAAGA	6 cut(s)	344, 494, 565, 585, 849, 858
MflI	RGATCY	2 cut(s)	745, 907
MhlI	GDGCHC	1 cut(s)	715
MluCI	AATT	8 cut(s)	126, 231, 256, 323, 625, 653, 1008, 1057
MlyI	GAGTC	1 cut(s)	368
MseI	TTAA	7 cut(s)	260, 321, 456, 630, 702, 866, 902
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	4 cut(s)	272, 368, 675, 893
MspR9I	CCNGG	2 cut(s)	368, 466
MvaI	CCWGG	1 cut(s)	466
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
NlaIII	CATG	4 cut(s)	95, 772, 779, 950
NlaIV	GGNNCC	2 cut(s)	599, 1043
NmeAIII	GCCGAG	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	489, 678
PkrI	GCNGC	1 cut(s)	622
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	599, 1043
PspPI	GGNCC	2 cut(s)	462, 1042
PsrI	GAACNNNNNNTAC	2 cut(s)	909, 941
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	745, 907
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	7 cut(s)	260, 321, 456, 630, 702, 866, 902
SatI	GCNGC	1 cut(s)	621
Sau3AI	GATC	6 cut(s)	243, 248, 688, 745, 793, 907
Sau96I	GGNCC	2 cut(s)	462, 1042
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	368, 466
SduI	GDGCHC	1 cut(s)	715
SfcI	CTRYAG	1 cut(s)	406
SinI	GGWCC	2 cut(s)	462, 1042
SmlI	CTYRAG	3 cut(s)	29, 114, 455
SmoI	CTYRAG	3 cut(s)	29, 114, 455
Sse9I	AATT	8 cut(s)	126, 231, 256, 323, 625, 653, 1008, 1057
SsiI	CCGC	2 cut(s)	179, 441
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	3 cut(s)	162, 287, 566
StyD4I	CCNGG	2 cut(s)	366, 464
TaqI	TCGA	1 cut(s)	251
TasI	AATT	8 cut(s)	126, 231, 256, 323, 625, 653, 1008, 1057
TfiI	GAWTC	2 cut(s)	489, 678
Tru1I	TTAA	7 cut(s)	260, 321, 456, 630, 702, 866, 902
Tru9I	TTAA	7 cut(s)	260, 321, 456, 630, 702, 866, 902
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	1 cut(s)	620
TspDTI	ATGAA	6 cut(s)	50, 150, 243, 650, 785, 890
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	462, 1042
XapI	RAATTY	2 cut(s)	256, 653
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	3 cut(s)	162, 287, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.