Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Reverse (-)

23284517 .. 23289903

Gene Structure 5387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1233100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGAGTGTTAAATTTTGGTTACAGTTTCAAACCCGCAGCAGAGCGCGGACTTCTTTGCTAGTTTTAACTGAAATCATCAAAGGTTGCACATTGGCACCAAAACGCCAATCTATTTTCTGCCATCAATCCCATTCACAAAATCGAGCCTTAGCACGCAAGGTCCGGGATGAGTGTTTTAATGGCCAAGCTACTTATGTAGATTGCGTGCGGATAATTCGGAGTTTAAGTAGACAAAAGTTGCCTCATGTAGCTCAGGAGCTTTTACTCGAAATGAAATCGGATGGTCTTTTGCCCAGCAACTCCACCCTATCTGCTTTGATGCTATTCCATGCCAACAATGGCCTTTTTCCTCAAGCGGAAGCAGTGTGGAACGAAATGTTATATATTTCTTTTGTGCCTAGTATTCAGGTTGTTTCGCAGTTATTTGATGTTTATGGAAATGCGAGATGTTTTGAAAAAGTGAATAAAATTTTGGGCCAGATGAGGGCTAGGTATTTGAGTTTGTTTTCGGAGGTTTACTCGCTAGCTATCTCTTGTTTTGGGAAGGGAGGCCAGCTTGAATTGATGGAAGGTGCATTGAAAGAAATGATTTCAATGGGTTTCCCGGTGGACTATGCCACTGGAAATGCCTTTATCAGATACTATAGTATTTTTGGTTCCCTTACTGAGATGGAGACTGCTTATGGCCGCCTTAAAAAGGTTGTAGGTCTGTTGGAAATTCAAATCAAAACAGGTTGTAAATGGCAGCTGCTAGCTGTTAGTTTCTTTACAGGTTGTATTCACACTTGCTGCAACTACAAAGGTAGAAGAAACTTGGGAAATCTTCTGTGGAACCTTTTGTTGTTATCATATGCTGCGAATTTTAAGATGAAAAGCTTACAAAGAGAATTTTTGAGAATGGTGGAAGCTGGTTTCCGCCCCGATCTTACTACATTTAATATCCGTGCTCTGGCCTTTTCAAAGATGTCTCTACTGTGGGCTCTCCATCTTAGCCTTGAACACATGACACATGAGAAAGTTGTTCCTGATCTTGTGACTTGCGTGTTGGGGTTTAAAGAGACTTCACTACTTTGGAGATGTTTATCTCCAAAGAAGAATGTAACGCAGCGGAAATTGATAGGCAAGAGAAAAAGAACACTCAAGATTACCATTCAACATTGCGGCTGTGTTGTTGTTGCATACTTGGATAGAAGACTAGGACGGAATTTGTATTTTTCCCTCAATAAAATGAATCTGGATGATTCCCCATTGGTATTAACGGATCCATTTGTGTTTGAAGTTTTGGGAAAAGGAGACTTTCATGCAAGCTCAGAGGCATTTTTGGAGTTCCAGAGGCAAAGGGAATGGACTTATAGGAAGTTAATTTCAGTATATTTGAAAAAAACATACCGGGGGAATCAGATCTTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

473

Amino Acids

54.33

Weight (kDa)

9.67

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	229
AccII	CGCG	1 cut(s)	46
AciI	CCGC	8 cut(s)	34, 46, 208, 356, 688, 916, 1108, 1161
AclWI	GGATC	2 cut(s)	1256, 1269
AcoI	YGGCCR	2 cut(s)	181, 685
AcsI	RAATTY	6 cut(s)	11, 468, 717, 859, 887, 1204
AfiI	CCNNNNNNNGG	3 cut(s)	484, 697, 949
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	4 cut(s)	668, 972, 1052, 1287
AlwI	GGATC	2 cut(s)	1256, 1269
AoxI	GGCC	6 cut(s)	181, 340, 475, 550, 685, 951
ApeKI	GCWGC	6 cut(s)	36, 745, 748, 789, 854, 1105
ApoI	RAATTY	6 cut(s)	11, 468, 717, 859, 887, 1204
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	160, 475
AsuC2I	CCSGG	3 cut(s)	164, 605, 1391
AsuNHI	GCTAGC	2 cut(s)	523, 751
AvaII	GGWCC	1 cut(s)	160
BaeI	ACNNNNGTAYC	2 cut(s)	631, 664
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	1261
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	982
BbsI	GAAGAC	1 cut(s)	1198
Bbv12I	GWGCWC	1 cut(s)	949
BbvI	GCAGC	6 cut(s)	48, 735, 757, 776, 841, 1117
BccI	CCATC	5 cut(s)	129, 275, 559, 664, 993
BcnI	CCSGG	3 cut(s)	164, 605, 1391
BcoDI	GTCTC	4 cut(s)	668, 972, 1052, 1287
BfaI	CTAG	6 cut(s)	59, 399, 489, 524, 752, 1196
BfmI	CTRYAG	1 cut(s)	643
BglII	AGATCT	1 cut(s)	1401
BisI	GCNGC	8 cut(s)	37, 688, 746, 749, 790, 855, 1106, 1162
BlsI	GCNGC	8 cut(s)	38, 689, 747, 750, 791, 856, 1107, 1163
Bme1390I	CCNGG	3 cut(s)	164, 605, 1391
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 475
BmiI	GGNNCC	4 cut(s)	96, 658, 833, 1263
BmrFI	CCNGG	3 cut(s)	164, 605, 1391
BmsI	GCATC	1 cut(s)	309
BmtI	GCTAGC	2 cut(s)	527, 755
BpiI	GAAGAC	1 cut(s)	1198
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
Bpu10I	CCTNAGC	2 cut(s)	148, 252
BpuEI	CTTGAG	2 cut(s)	336, 1124
BpuMI	CCSGG	3 cut(s)	164, 605, 1391
BsaBI	GATNNNNATC	1 cut(s)	1081
BsaJI	CCNNGG	1 cut(s)	1390
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 697, 949
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	1156
Bse8I	GATNNNNATC	1 cut(s)	1081
BseDI	CCNNGG	1 cut(s)	1390
BseGI	GGATG	3 cut(s)	172, 286, 1243
BseJI	GATNNNNATC	1 cut(s)	1081
BseLI	CCNNNNNNNGG	3 cut(s)	484, 697, 949
BseMI	GCAATG	1 cut(s)	1156
BseMII	CTCAG	3 cut(s)	266, 657, 1323
BseNI	ACTGG	1 cut(s)	625
BseXI	GCAGC	6 cut(s)	48, 735, 757, 776, 841, 1117
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	6 cut(s)	183, 342, 477, 552, 687, 953
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	949
BsiSI	CCGG	3 cut(s)	163, 605, 1390
BslI	CCNNNNNNNGG	3 cut(s)	484, 697, 949
BsmAI	GTCTC	4 cut(s)	668, 972, 1052, 1287
BsnI	GGCC	6 cut(s)	183, 342, 477, 552, 687, 953
Bsp1286I	GDGCHC	2 cut(s)	949, 982
Bsp143I	GATC	4 cut(s)	922, 1027, 1261, 1401
BspACI	CCGC	8 cut(s)	34, 46, 208, 356, 688, 916, 1108, 1161
BspANI	GGCC	6 cut(s)	183, 342, 477, 552, 687, 953
BspCNI	CTCAG	3 cut(s)	265, 658, 1322
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	96, 658, 833, 1263
BspOI	GCTAGC	2 cut(s)	527, 755
BspPI	GGATC	2 cut(s)	1256, 1269
BspT107I	GGYRCC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	1156
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	1390
BssMI	GATC	4 cut(s)	922, 1027, 1261, 1401
Bst4CI	ACNGT	2 cut(s)	24, 975
BstC8I	GCNNGC	6 cut(s)	154, 206, 525, 554, 753, 1306
BstDEI	CTNAG	5 cut(s)	148, 252, 666, 989, 1309
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	3 cut(s)	172, 286, 1243
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	925, 1030, 1264, 1404
BstMAI	GTCTC	4 cut(s)	668, 972, 1052, 1287
BstMBI	GATC	4 cut(s)	922, 1027, 1261, 1401
BstSCI	CCNGG	3 cut(s)	162, 603, 1389
BstSFI	CTRYAG	1 cut(s)	643
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	6 cut(s)	48, 735, 757, 776, 841, 1117
BstV2I	GAAGAC	1 cut(s)	1198
BstX2I	RGATCY	2 cut(s)	1261, 1401
BstYI	RGATCY	2 cut(s)	1261, 1401
BsuRI	GGCC	6 cut(s)	183, 342, 477, 552, 687, 953
BtsCI	GGATG	3 cut(s)	172, 286, 1243
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 618
Cac8I	GCNNGC	6 cut(s)	154, 206, 525, 554, 753, 1306
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	160, 475
CviAII	CATG	5 cut(s)	245, 329, 1003, 1010, 1301
DdeI	CTNAG	5 cut(s)	148, 252, 666, 989, 1309
DpnI	GATC	4 cut(s)	924, 1029, 1263, 1403
DpnII	GATC	4 cut(s)	922, 1027, 1261, 1401
DraI	TTTAAA	1 cut(s)	1054
EaeI	YGGCCR	2 cut(s)	181, 685
EciI	GGCGGA	1 cut(s)	905
Eco24I	GRGCYC	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	982
FaeI	CATG	5 cut(s)	248, 332, 1006, 1013, 1304
FatI	CATG	5 cut(s)	244, 328, 1002, 1009, 1300
FauI	CCCGC	1 cut(s)	41
FauNDI	CATATG	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	8 cut(s)	37, 688, 746, 749, 790, 855, 1106, 1162
FokI	GGATG	3 cut(s)	179, 293, 1250
FriOI	GRGCYC	1 cut(s)	982
Fsp4HI	GCNGC	8 cut(s)	37, 688, 746, 749, 790, 855, 1106, 1162
FspBI	CTAG	6 cut(s)	59, 399, 489, 524, 752, 1196
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	8 cut(s)	37, 688, 746, 749, 790, 855, 1106, 1162
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	6 cut(s)	183, 342, 477, 552, 687, 953
HapII	CCGG	3 cut(s)	163, 605, 1390
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	5 cut(s)	248, 332, 1006, 1013, 1304
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	874
HinfI	GANTC	3 cut(s)	1231, 1241, 1396
HpaII	CCGG	3 cut(s)	163, 605, 1390
Hpy166II	GTNNAC	3 cut(s)	230, 517, 610
Hpy188I	TCNGA	6 cut(s)	219, 280, 511, 638, 1312, 1401
Hpy188III	TCNNGA	5 cut(s)	254, 1025, 1141, 1235, 1330
Hpy8I	GTNNAC	3 cut(s)	230, 517, 610
HpyAV	CCTTC	2 cut(s)	538, 563
HpyCH4III	ACNGT	2 cut(s)	24, 975
HpyCH4V	TGCA	5 cut(s)	87, 575, 792, 1178, 1304
HpyF3I	CTNAG	5 cut(s)	148, 252, 666, 989, 1309
Hsp92II	CATG	5 cut(s)	248, 332, 1006, 1013, 1304
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	4 cut(s)	922, 1027, 1261, 1401
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	6 cut(s)	48, 735, 757, 776, 841, 1117
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	6 cut(s)	59, 399, 489, 524, 752, 1196
MaeIII	GTNAC	3 cut(s)	18, 1033, 1099
MalI	GATC	4 cut(s)	924, 1029, 1263, 1403
MboI	GATC	4 cut(s)	922, 1027, 1261, 1401
MboII	GAAGA	4 cut(s)	815, 819, 1105, 1203
MflI	RGATCY	2 cut(s)	1261, 1401
MhlI	GDGCHC	2 cut(s)	949, 982
MlsI	TGGCCA	1 cut(s)	183
MluNI	TGGCCA	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	8 cut(s)	252, 360, 477, 505, 542, 1229, 1306, 1326
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	2 cut(s)	748, 1108
MspI	CCGG	3 cut(s)	163, 605, 1390
MspR9I	CCNGG	3 cut(s)	164, 605, 1391
MvnI	CGCG	1 cut(s)	46
NciI	CCSGG	3 cut(s)	164, 605, 1391
NdeI	CATATG	1 cut(s)	850
NdeII	GATC	4 cut(s)	922, 1027, 1261, 1401
NheI	GCTAGC	2 cut(s)	523, 751
NlaIII	CATG	5 cut(s)	248, 332, 1006, 1013, 1304
NlaIV	GGNNCC	4 cut(s)	96, 658, 833, 1263
NmuCI	GTSAC	1 cut(s)	1033
PfeI	GAWTC	3 cut(s)	1231, 1241, 1396
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	8 cut(s)	38, 689, 747, 750, 791, 856, 1107, 1163
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	96, 658, 833, 1263
PspPI	GGNCC	2 cut(s)	160, 475
PsrI	GAACNNNNNNTAC	2 cut(s)	640, 672
PsuI	RGATCY	2 cut(s)	1261, 1401
PvuII	CAGCTG	1 cut(s)	748
SatI	GCNGC	8 cut(s)	37, 688, 746, 749, 790, 855, 1106, 1162
Sau3AI	GATC	4 cut(s)	922, 1027, 1261, 1401
Sau96I	GGNCC	2 cut(s)	160, 475
ScrFI	CCNGG	3 cut(s)	164, 605, 1391
SduI	GDGCHC	2 cut(s)	949, 982
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	351, 1139
SmoI	CTYRAG	2 cut(s)	351, 1139
SsiI	CCGC	8 cut(s)	34, 46, 208, 356, 688, 916, 1108, 1161
SspMI	CTAG	6 cut(s)	59, 399, 489, 524, 752, 1196
StyD4I	CCNGG	3 cut(s)	162, 603, 1389
TaaI	ACNGT	2 cut(s)	24, 975
TaqI	TCGA	2 cut(s)	142, 267
TauI	GCSGC	2 cut(s)	690, 1164
TfiI	GAWTC	3 cut(s)	1231, 1241, 1396
TscAI	CASTG	2 cut(s)	369, 625
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	6 cut(s)	36, 745, 748, 789, 854, 1105
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	4 cut(s)	287, 884, 1244, 1289
TspGWI	ACGGA	3 cut(s)	932, 1216, 1274
TspRI	CASTG	2 cut(s)	369, 625
VpaK11BI	GGWCC	1 cut(s)	160
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	6 cut(s)	11, 468, 717, 859, 887, 1204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	229
XspI	CTAG	6 cut(s)	59, 399, 489, 524, 752, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.