Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Reverse (-)

4584561 .. 4588021

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G064400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGGGGCACTCTTCTTCTGAGCACAACATGTGTTTCAAGTTCTCTCAAGCCACAGCATCTTTCTTTTTCCTCCCATCAACCACAGTCACAGAGTCGAGCCCTGGCACGCAAGATAATCCGGAAATGGAAGCAGGAAGAGTGTTTTGATGGCAAGGGTATTTACGTAGATTGTGTGCCACTAATACGAAGTTTAAGTAGACAAAAGATGCCTCATGTAGCCCAGGAGCTTGTACTTGAAATGAAATCCGATGGTCTTTTGCCTAGCAACTCCACTCTATCTGCTTTGATGCTATGCCATGCGAACAATGGTCTTTTTCCTCAAGCTGAGGCAATTTGGGACGAAATGTTACATAGTTCTTTTGTGCCTAGTATTCAGGTTGTTTCCGAGTTATTTGATGCTTATGGCAATGTGGGATGTTTCGAAAAAGTGAATGAAATTTTGGCTCAGATAAGGTCTAGGAATTTAAGTTTGTTTCCAGAGGTTTACTCACTGGCTATCTCTTGCTTTGGGAAAGGGGGGCAGCTTGAATTGATGGAAGGTACATTGAAAGAAATGATTTCAAGGGGTTTCCCGTTGGACTCTGCCACTGGTAATGCCTTTATTAGATACTATAGCATTTTTGGTTCTCTGACTGAAATGGAGACCGCTTATGGCCGCCTTAAGAGGTCTAGGTTTCTTATAGAGGAAGAGGGAATCCGGGCAATGTCATTTGCGTATCTGAAGAAAAGGAAGTTTTACAGATTAGCTGAGCTCCTGAAGAATGTTGGTCTAGGTAGAAGAAACTTGGGAAATCTTTCATGGAACCTTTTGTTGTTATCTTATGCTGCCGATTTTAAGATGAAAAGCTTACAAAGAGAATTTCTGAGAATGGTGGAAGCTGGTTTCCATCCTGATCTTACTACATTTAATATTCGTGCTCTGGCCTTTTCTAGGATGTCTCTACTCTGGGATCTCCATCTGAGCCTTGAACACATGAAACATGAGAAAGTTTTTCCTGATCTTGTGACTTGTGGTTGTGTTGTTGATGCTTACTTAGAGAGAAGACTAGGAAAAAATATGTATTTTGCTCTCAATAAAATGAATTTGGATGATTCTCCACTCATATTAACAGATCCATTTGTGTTTGAAGTTTTGGGAAAAGGGGACTTTCATGCAAGCTCAGAGGCATTTTTGGAGTTCCAGAGTCAGAGGGAATGGACTTATAGGAGGTTAATTTCAGTATATTTGAAAAAGCAATATCGGAGGAACCAGATCTTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

424

Amino Acids

48.57

Weight (kDa)

9.04

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	2 cut(s)	648, 658
AclWI	GGATC	2 cut(s)	960, 1109
AcoI	YGGCCR	1 cut(s)	655
AcsI	RAATTY	4 cut(s)	438, 463, 860, 1084
AcuI	CTGAAG	2 cut(s)	743, 779
AfaI	GTAC	2 cut(s)	234, 544
AfiI	CCNNNNNNNGG	1 cut(s)	933
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	8 cut(s)	39, 239, 530, 550, 564, 971, 1130, 1231
AjnI	CCWGG	2 cut(s)	102, 222
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	8 cut(s)	229, 326, 526, 749, 754, 849, 881, 1161
AluI	AGCT	8 cut(s)	229, 326, 526, 749, 754, 849, 881, 1161
Alw21I	GWGCWC	3 cut(s)	26, 756, 922
Alw26I	GTCTC	2 cut(s)	638, 945
AlwI	GGATC	2 cut(s)	960, 1109
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	2 cut(s)	655, 924
ApeKI	GCWGC	2 cut(s)	523, 827
ApoI	RAATTY	4 cut(s)	438, 463, 860, 1084
Asp700I	GAANNNNTTC	1 cut(s)	796
AsuC2I	CCSGG	1 cut(s)	701
AsuII	TTCGAA	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	103, 756
BbsI	GAAGAC	1 cut(s)	1051
Bbv12I	GWGCWC	3 cut(s)	26, 756, 922
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	535, 814
BccI	CCATC	6 cut(s)	84, 143, 245, 529, 897, 966
BciT130I	CCWGG	2 cut(s)	104, 224
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	2 cut(s)	638, 945
BfaI	CTAG	7 cut(s)	264, 369, 459, 672, 773, 933, 1049
BfmI	CTRYAG	1 cut(s)	613
BfrI	CTTAAG	1 cut(s)	662
BglII	AGATCT	1 cut(s)	1254
BisI	GCNGC	3 cut(s)	524, 658, 828
BlpI	GCTNAGC	1 cut(s)	750
BlsI	GCNGC	3 cut(s)	525, 659, 829
Bme1390I	CCNGG	3 cut(s)	104, 224, 701
BmiI	GGNNCC	2 cut(s)	806, 1250
BmrFI	CCNGG	3 cut(s)	104, 224, 701
BmsI	GCATC	5 cut(s)	67, 198, 279, 388, 1018
BpiI	GAAGAC	1 cut(s)	1051
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	32, 306
BpuMI	CCSGG	1 cut(s)	701
BsaAI	YACGTR	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	957
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	102, 222
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	933
Bse1I	ACTGG	2 cut(s)	498, 595
Bse3DI	GCAATG	2 cut(s)	415, 711
Bse8I	GATNNNNATC	1 cut(s)	957
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	104, 224
BseDI	CCNNGG	2 cut(s)	102, 222
BseGI	GGATG	4 cut(s)	422, 889, 942, 1096
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	1 cut(s)	933
BseMI	GCAATG	2 cut(s)	415, 711
BseMII	CTCAG	7 cut(s)	11, 318, 461, 741, 857, 953, 1176
BseNI	ACTGG	2 cut(s)	498, 595
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	535, 814
BshFI	GGCC	2 cut(s)	657, 926
BsiHKAI	GWGCWC	3 cut(s)	26, 756, 922
BsiSI	CCGG	2 cut(s)	121, 700
BslFI	GGGAC	2 cut(s)	353, 1160
BslI	CCNNNNNNNGG	1 cut(s)	933
BsmAI	GTCTC	2 cut(s)	638, 945
BsmFI	GGGAC	2 cut(s)	353, 1160
BsnI	GGCC	2 cut(s)	657, 926
Bso31I	GGTCTC	1 cut(s)	638
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	5 cut(s)	11, 26, 103, 756, 922
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
Bsp1720I	GCTNAGC	1 cut(s)	750
BspACI	CCGC	2 cut(s)	648, 658
BspANI	GGCC	2 cut(s)	657, 926
BspCNI	CTCAG	7 cut(s)	12, 319, 460, 742, 858, 954, 1175
BspEI	TCCGGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	806, 1250
BspPI	GGATC	2 cut(s)	960, 1109
BspT104I	TTCGAA	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	638
BsrDI	GCAATG	2 cut(s)	415, 711
BsrI	ACTGG	2 cut(s)	498, 595
BssECI	CCNNGG	2 cut(s)	102, 222
BssMI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
Bst2UI	CCWGG	2 cut(s)	104, 224
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	3 cut(s)	18, 132, 684
BstAFI	CTTAAG	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	109, 1159
BstDEI	CTNAG	8 cut(s)	20, 327, 447, 750, 866, 962, 1036, 1162
BstENI	CCTNNNNNAGG	1 cut(s)	931
BstF5I	GGATG	4 cut(s)	422, 889, 942, 1096
BstKTI	GATC	5 cut(s)	898, 955, 1003, 1117, 1257
BstMAI	GTCTC	2 cut(s)	638, 945
BstMBI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
BstNI	CCWGG	2 cut(s)	104, 224
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	3 cut(s)	102, 222, 699
BstSFI	CTRYAG	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	11
BstSNI	TACGTA	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	535, 814
BstV2I	GAAGAC	1 cut(s)	1051
BstX2I	RGATCY	3 cut(s)	952, 1114, 1254
BstYI	RGATCY	3 cut(s)	952, 1114, 1254
BsuRI	GGCC	2 cut(s)	657, 926
BtsCI	GGATG	4 cut(s)	422, 889, 942, 1096
BtsIMutI	CAGTG	2 cut(s)	491, 588
Cac8I	GCNNGC	2 cut(s)	109, 1159
Csp6I	GTAC	2 cut(s)	233, 543
CviAII	CATG	7 cut(s)	30, 215, 299, 801, 976, 983, 1154
CviQI	GTAC	2 cut(s)	233, 543
DdeI	CTNAG	8 cut(s)	20, 327, 447, 750, 866, 962, 1036, 1162
DpnI	GATC	5 cut(s)	897, 954, 1002, 1116, 1256
DpnII	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
EaeI	YGGCCR	1 cut(s)	655
Eam1104I	CTCTTC	3 cut(s)	18, 132, 684
EarI	CTCTTC	3 cut(s)	18, 132, 684
Ecl136II	GAGCTC	1 cut(s)	754
Eco105I	TACGTA	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	103, 756
Eco31I	GGTCTC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	2 cut(s)	743, 779
EcoICRI	GAGCTC	1 cut(s)	754
EcoNI	CCTNNNNNAGG	1 cut(s)	931
EcoRII	CCWGG	2 cut(s)	102, 222
EcoT38I	GRGCYC	2 cut(s)	103, 756
FaeI	CATG	7 cut(s)	33, 218, 302, 804, 979, 986, 1157
FaqI	GGGAC	2 cut(s)	353, 1160
FatI	CATG	7 cut(s)	29, 214, 298, 800, 975, 982, 1153
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	524, 658, 828
FokI	GGATG	4 cut(s)	429, 876, 949, 1103
FriOI	GRGCYC	2 cut(s)	103, 756
Fsp4HI	GCNGC	3 cut(s)	524, 658, 828
FspBI	CTAG	7 cut(s)	264, 369, 459, 672, 773, 933, 1049
GluI	GCNGC	3 cut(s)	524, 658, 828
HaeIII	GGCC	2 cut(s)	657, 926
HapII	CCGG	2 cut(s)	121, 700
Hin1II	CATG	7 cut(s)	33, 218, 302, 804, 979, 986, 1157
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	5 cut(s)	94, 581, 696, 1094, 1186
HpaII	CCGG	2 cut(s)	121, 700
Hpy166II	GTNNAC	2 cut(s)	200, 487
Hpy188III	TCNNGA	6 cut(s)	121, 479, 757, 893, 998, 1183
Hpy8I	GTNNAC	2 cut(s)	200, 487
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	1157
HpyF3I	CTNAG	8 cut(s)	20, 327, 447, 750, 866, 962, 1036, 1162
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	7 cut(s)	33, 218, 302, 804, 979, 986, 1157
Kpn2I	TCCGGA	1 cut(s)	120
Kzo9I	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
LmnI	GCTCC	2 cut(s)	226, 759
Lsp1109I	GCAGC	2 cut(s)	535, 814
LweI	GCATC	5 cut(s)	67, 198, 279, 388, 1018
MaeI	CTAG	7 cut(s)	264, 369, 459, 672, 773, 933, 1049
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	3 cut(s)	87, 348, 1006
MalI	GATC	5 cut(s)	897, 954, 1002, 1116, 1256
MboI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
MboII	GAAGA	8 cut(s)	5, 8, 149, 701, 736, 772, 792, 1056
MflI	RGATCY	3 cut(s)	952, 1114, 1254
MhlI	GDGCHC	5 cut(s)	11, 26, 103, 756, 922
MluCI	AATT	8 cut(s)	333, 438, 463, 530, 860, 1084, 1215, 1264
MlyI	GAGTC	3 cut(s)	103, 575, 1195
MmeI	TCCRAC	1 cut(s)	558
MroI	TCCGGA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	7 cut(s)	194, 467, 663, 837, 909, 1109, 1214
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	2 cut(s)	121, 700
MspR9I	CCNGG	3 cut(s)	104, 224, 701
MvaI	CCWGG	2 cut(s)	104, 224
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
NlaIII	CATG	7 cut(s)	33, 218, 302, 804, 979, 986, 1157
NlaIV	GGNNCC	2 cut(s)	806, 1250
NmuCI	GTSAC	2 cut(s)	87, 1006
NspI	RCATGY	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	423
PciI	ACATGT	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	696, 1094
PkrI	GCNGC	3 cut(s)	525, 659, 829
PleI	GAGTC	3 cut(s)	102, 575, 1194
PpsI	GAGTC	3 cut(s)	102, 575, 1194
Ppu21I	YACGTR	1 cut(s)	166
PscI	ACATGT	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	102, 222
PspGI	CCWGG	2 cut(s)	102, 222
PspN4I	GGNNCC	2 cut(s)	806, 1250
PsuI	RGATCY	3 cut(s)	952, 1114, 1254
RsaI	GTAC	2 cut(s)	234, 544
RsaNI	GTAC	2 cut(s)	233, 543
SacI	GAGCTC	1 cut(s)	756
SaqAI	TTAA	7 cut(s)	194, 467, 663, 837, 909, 1109, 1214
SatI	GCNGC	3 cut(s)	524, 658, 828
Sau3AI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
SchI	GAGTC	3 cut(s)	103, 575, 1195
ScrFI	CCNGG	3 cut(s)	104, 224, 701
SduI	GDGCHC	5 cut(s)	11, 26, 103, 756, 922
SfaNI	GCATC	5 cut(s)	67, 198, 279, 388, 1018
SfcI	CTRYAG	1 cut(s)	613
SfuI	TTCGAA	1 cut(s)	423
SmlI	CTYRAG	3 cut(s)	47, 321, 662
SmoI	CTYRAG	3 cut(s)	47, 321, 662
SnaBI	TACGTA	1 cut(s)	166
Sse9I	AATT	8 cut(s)	333, 438, 463, 530, 860, 1084, 1215, 1264
SsiI	CCGC	2 cut(s)	648, 658
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	7 cut(s)	264, 369, 459, 672, 773, 933, 1049
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	3 cut(s)	102, 222, 699
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	97, 423
TasI	AATT	8 cut(s)	333, 438, 463, 530, 860, 1084, 1215, 1264
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	2 cut(s)	696, 1094
Tru1I	TTAA	7 cut(s)	194, 467, 663, 837, 909, 1109, 1214
Tru9I	TTAA	7 cut(s)	194, 467, 663, 837, 909, 1109, 1214
TscAI	CASTG	2 cut(s)	498, 595
TseFI	GTSAC	2 cut(s)	87, 1006
TseI	GCWGC	2 cut(s)	523, 827
Tsp45I	GTSAC	2 cut(s)	87, 1006
TspDTI	ATGAA	7 cut(s)	257, 450, 789, 857, 992, 1097, 1142
TspRI	CASTG	2 cut(s)	498, 595
Vha464I	CTTAAG	1 cut(s)	662
XagI	CCTNNNNNAGG	1 cut(s)	931
XapI	RAATTY	4 cut(s)	438, 463, 860, 1084
XceI	RCATGY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	7 cut(s)	264, 369, 459, 672, 773, 933, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.