Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Reverse (-)

13707735 .. 13728557

Gene Structure 20823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAGGCCATTCTTGTTCTGAGCACAGCCTCTGTTTCGGGGTCTCTCAACCCCAAACGTCTTCCTATTTTTTGCCATCAATCACAACCTTCGCAAAATCGAGCTCTAGCACGCAAGATAATCCGGACATGGAAGCAGGAAGAGTGTTCCAATGGGAAAGATAATTATGTAGATTGTGTACCGCTAATACAGAGTTTAAGTAGACAAAAGATGCCTCATGTAGCTCAGGAGGTTTTACTTGAGATGAAATCGGATGGTCTTGTGCCGAGTAACTCCACTCTATCTGCTGTAATGCTATGTCATGCGAAGAATGACCTTTTCCCTCAAGCTGAGGCAATTTGGGATGAAATGTTGAACAGCTCTTTTGTGCCTAGTATTCAGGTTGTGGCGGAGCTATTTGATGTTTATGGCAATGTGGGATGTTTCGGAAAGGTGAATGAAATTGTGGGTCAGATCAGATCGAGGAATTTAAGTTTGTTACCGGAGGTTTACTCACTAGCTATCTCTTGCTTTGGGAAGGGAGGCCAGCTTAAATTGATGGAAGATACATTGAAAGAAATGGTATCAAGGGGCTTCCCGGTAGACTCGGCCACTGGTAATGTCTTTATTAGGTACTATAGCATTTTAGGTTCTCTGACTGAGATGGAGACCGCTTATGGTCGCCTTAAGAGGTCCAGGTTTTTGATAGAGGAAGAGGGAATCAGGGCAATGTCTTTGGCGTATCTAAAGAGAAGGAAGTTTTATAGTTTAGCTGAGTTCCTGAAGAGTGTTGGTCTAGGTAGAAGAAACTTGGGAAATCTTTTATGGAACCTATTGTTGCTATCCTATGCTGCCAACTTTAAGATGAAAAGCTTACAAAGAGAATTTCTGAGAATGGTGGAAGCCGGATTCCACCCTGATCTCACTACATTTAATATTCGTGCTCTGGCTTTTTCAAGAATGTCTCTACTCTGGGATCTCCATCTTACTCTTGAACACATGAAACATGAGAAAGTTGTTCCTGATCTTGTCACTTGTGGTTGTATTGTTGACGCATACTTGGATAGAACTCATAGAAGACTGGGAAGAAACTTGTATTTTGCTTTAAACAAAATGAACTTGGATGATTCTCCGGTAGTCTTAACAGATCCATTTGTCTTTGAAGTTCTGGGGAAAGGCGACTTCCATGCAAGCTCAGAGGCATTTTTGGAGTTTCGGAAGCAGAAGGAATGGACTTATAGGAAGCTAATTTCAGTATATTTGAAAAAGCAATATCGGAGGGACCAGATATTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

427

Amino Acids

48.93

Weight (kDa)

9.16

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	202, 582
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	3 cut(s)	182, 389, 651
AclWI	GGATC	2 cut(s)	963, 1121
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	2 cut(s)	466, 863
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	2 cut(s)	180, 614
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	6 cut(s)	355, 553, 936, 974, 1142, 1243
AjnI	CCWGG	1 cut(s)	674
Alw21I	GWGCWC	3 cut(s)	26, 106, 925
Alw26I	GTCTC	3 cut(s)	48, 641, 948
AlwI	GGATC	2 cut(s)	963, 1121
AlwNI	CAGNNNCTG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	3 cut(s)	6, 523, 588
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	2 cut(s)	466, 863
AspS9I	GGNCC	2 cut(s)	672, 1261
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	2 cut(s)	672, 1261
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	2 cut(s)	53, 1063
Bbv12I	GWGCWC	3 cut(s)	26, 106, 925
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	817
BccI	CCATC	5 cut(s)	84, 248, 532, 637, 969
BcgI	CGANNNNNNTGC	2 cut(s)	1148, 1182
BciT130I	CCWGG	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	3 cut(s)	48, 641, 948
BfaI	CTAG	4 cut(s)	107, 372, 497, 776
BfmI	CTRYAG	1 cut(s)	616
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	1 cut(s)	831
BlsI	GCNGC	1 cut(s)	832
Bme1390I	CCNGG	2 cut(s)	578, 676
Bme18I	GGWCC	2 cut(s)	672, 1261
BmgT120I	GGNCC	2 cut(s)	672, 1261
BmiI	GGNNCC	2 cut(s)	809, 1262
BmrFI	CCNGG	2 cut(s)	578, 676
BmrI	ACTGGG	1 cut(s)	1070
BmsI	GCATC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	1070
BpiI	GAAGAC	2 cut(s)	53, 1063
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
Bpu10I	CCTNAGC	2 cut(s)	225, 330
BpuEI	CTTGAG	2 cut(s)	260, 309
BpuMI	CCSGG	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	960
BsaI	GGTCTC	2 cut(s)	48, 641
BsaWI	WCCGGW	3 cut(s)	123, 481, 1111
Bse1I	ACTGG	2 cut(s)	598, 1065
Bse3DI	GCAATG	2 cut(s)	418, 714
Bse8I	GATNNNNATC	1 cut(s)	960
BseAI	TCCGGA	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	676
BseGI	GGATG	4 cut(s)	259, 349, 425, 1108
BseJI	GATNNNNATC	1 cut(s)	960
BseMI	GCAATG	2 cut(s)	418, 714
BseMII	CTCAG	7 cut(s)	11, 239, 321, 630, 744, 860, 1188
BseNI	ACTGG	2 cut(s)	598, 1065
BseXI	GCAGC	1 cut(s)	817
BshFI	GGCC	3 cut(s)	8, 525, 590
BsiHKAI	GWGCWC	3 cut(s)	26, 106, 925
BsiSI	CCGG	5 cut(s)	124, 482, 578, 885, 1112
BslFI	GGGAC	1 cut(s)	1274
BsmAI	GTCTC	3 cut(s)	48, 641, 948
BsmFI	GGGAC	1 cut(s)	1274
BsnI	GGCC	3 cut(s)	8, 525, 590
Bso31I	GGTCTC	2 cut(s)	48, 641
Bsp1286I	GDGCHC	3 cut(s)	26, 106, 925
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
BspACI	CCGC	3 cut(s)	182, 389, 651
BspANI	GGCC	3 cut(s)	8, 525, 590
BspCNI	CTCAG	7 cut(s)	12, 238, 322, 631, 745, 861, 1187
BspEI	TCCGGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	809, 1262
BspPI	GGATC	2 cut(s)	963, 1121
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	2 cut(s)	48, 641
BsrDI	GCAATG	2 cut(s)	418, 714
BsrI	ACTGG	2 cut(s)	598, 1065
BssMI	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
Bst2UI	CCWGG	1 cut(s)	676
Bst6I	CTCTTC	3 cut(s)	135, 687, 758
BstAFI	CTTAAG	1 cut(s)	665
BstC8I	GCNNGC	3 cut(s)	112, 527, 1171
BstDEI	CTNAG	7 cut(s)	20, 225, 330, 639, 753, 869, 1174
BstF5I	GGATG	4 cut(s)	259, 349, 425, 1108
BstKTI	GATC	6 cut(s)	456, 461, 901, 958, 1006, 1129
BstMAI	GTCTC	3 cut(s)	48, 641, 948
BstMBI	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
BstNI	CCWGG	1 cut(s)	676
BstSCI	CCNGG	2 cut(s)	576, 674
BstSFI	CTRYAG	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	817
BstV2I	GAAGAC	2 cut(s)	53, 1063
BstX2I	RGATCY	2 cut(s)	955, 1126
BstYI	RGATCY	2 cut(s)	955, 1126
BsuRI	GGCC	3 cut(s)	8, 525, 590
BtsCI	GGATG	4 cut(s)	259, 349, 425, 1108
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	112, 527, 1171
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	672, 1261
CseI	GACGC	1 cut(s)	1040
Csp6I	GTAC	2 cut(s)	179, 613
CviAII	CATG	6 cut(s)	129, 218, 302, 979, 986, 1166
CviQI	GTAC	2 cut(s)	179, 613
DdeI	CTNAG	7 cut(s)	20, 225, 330, 639, 753, 869, 1174
DpnI	GATC	6 cut(s)	455, 460, 900, 957, 1005, 1128
DpnII	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
DraI	TTTAAA	1 cut(s)	1086
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	3 cut(s)	135, 687, 758
EarI	CTCTTC	3 cut(s)	135, 687, 758
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	2 cut(s)	48, 641
Eco47I	GGWCC	2 cut(s)	672, 1261
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	782
EcoICRI	GAGCTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	6 cut(s)	132, 221, 305, 982, 989, 1169
FaqI	GGGAC	1 cut(s)	1274
FatI	CATG	6 cut(s)	128, 217, 301, 978, 985, 1165
FblI	GTMKAC	2 cut(s)	202, 582
Fnu4HI	GCNGC	1 cut(s)	831
FokI	GGATG	4 cut(s)	266, 356, 432, 1115
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	831
FspBI	CTAG	4 cut(s)	107, 372, 497, 776
GluI	GCNGC	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	8, 525, 590
HapII	CCGG	5 cut(s)	124, 482, 578, 885, 1112
HgaI	GACGC	1 cut(s)	1040
Hin1II	CATG	6 cut(s)	132, 221, 305, 982, 989, 1169
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	4 cut(s)	584, 699, 888, 1106
HpaII	CCGG	5 cut(s)	124, 482, 578, 885, 1112
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	5 cut(s)	179, 203, 490, 583, 1030
Hpy188III	TCNNGA	6 cut(s)	124, 227, 760, 936, 971, 1001
Hpy8I	GTNNAC	5 cut(s)	179, 203, 490, 583, 1030
HpyAV	CCTTC	4 cut(s)	99, 511, 726, 1198
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	1169
HpyF3I	CTNAG	7 cut(s)	20, 225, 330, 639, 753, 869, 1174
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	6 cut(s)	132, 221, 305, 982, 989, 1169
Kpn2I	TCCGGA	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	817
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	4 cut(s)	107, 372, 497, 776
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	269, 477, 1009
MalI	GATC	6 cut(s)	455, 460, 900, 957, 1005, 1128
MboI	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
MboII	GAAGA	9 cut(s)	53, 152, 319, 554, 704, 775, 795, 1068, 1077
MflI	RGATCY	2 cut(s)	955, 1126
MhlI	GDGCHC	3 cut(s)	26, 106, 925
MluCI	AATT	8 cut(s)	163, 336, 441, 466, 533, 863, 1227, 1276
MlyI	GAGTC	1 cut(s)	578
MroI	TCCGGA	1 cut(s)	123
MseI	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1085, 1121
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	5 cut(s)	124, 482, 578, 885, 1112
MspR9I	CCNGG	2 cut(s)	578, 676
MvaI	CCWGG	1 cut(s)	676
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
NlaIII	CATG	6 cut(s)	132, 221, 305, 982, 989, 1169
NlaIV	GGNNCC	2 cut(s)	809, 1262
NmeAIII	GCCGAG	2 cut(s)	291, 566
NmuCI	GTSAC	1 cut(s)	1009
PfeI	GAWTC	3 cut(s)	699, 888, 1106
PkrI	GCNGC	1 cut(s)	832
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	2 cut(s)	809, 1262
PspPI	GGNCC	2 cut(s)	672, 1261
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	955, 1126
RsaI	GTAC	2 cut(s)	180, 614
RsaNI	GTAC	2 cut(s)	179, 613
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1085, 1121
SatI	GCNGC	1 cut(s)	831
Sau3AI	GATC	6 cut(s)	453, 458, 898, 955, 1003, 1126
Sau96I	GGNCC	2 cut(s)	672, 1261
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	578, 676
SduI	GDGCHC	3 cut(s)	26, 106, 925
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	616
SinI	GGWCC	2 cut(s)	672, 1261
SmlI	CTYRAG	3 cut(s)	239, 324, 665
SmoI	CTYRAG	3 cut(s)	239, 324, 665
Sse9I	AATT	8 cut(s)	163, 336, 441, 466, 533, 863, 1227, 1276
SsiI	CCGC	3 cut(s)	182, 389, 651
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	4 cut(s)	107, 372, 497, 776
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	576, 674
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	2 cut(s)	100, 461
TasI	AATT	8 cut(s)	163, 336, 441, 466, 533, 863, 1227, 1276
TfiI	GAWTC	3 cut(s)	699, 888, 1106
Tru1I	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1085, 1121
Tru9I	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1085, 1121
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	1009
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	1 cut(s)	1009
TspDTI	ATGAA	6 cut(s)	260, 360, 453, 860, 995, 1109
TspRI	CASTG	1 cut(s)	598
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	672, 1261
XapI	RAATTY	2 cut(s)	466, 863
XmiI	GTMKAC	2 cut(s)	202, 582
XspI	CTAG	4 cut(s)	107, 372, 497, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.