Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Reverse (-)

16640761 .. 16648261

Gene Structure 7501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGATCCGGACATGGAAGCAGGAAGAGTGTTCCAATGGGAAAGATAATTATGTAGATTGTGTACCGCTAATACAGAGTTTAAGTAGACAAAAGATGCCTCATGTAGCTCAGGAGGTTTTACTTGAGGTGAAATCGGATGGTCTTGTGCCGAGTAACTCCACTCTATCTGCTGTAATGCTATGTCATGCGAAGAATGGCCTTTTCCCTCAAGCTGAGGCAATTTGGGATGAAATGTTGAACAGCTCTTTTGTGCCTAGTATTCAGGTTGTGGCGGAGCTATTTGATGTTTATGGCAATTTGGGATGTTTCGGAAAGGTGAATGAAATTGTGGGTCAGATCAAATCGAGGAATTTAAGTTTGTTACCGGAGGTTTACTCACTAGCTATCTCTTGCTTTGGGAAGGGAGGCCAGCTTAAATTGATGGAAGATACATTGAAAGAAATGGTATCAAGGGGCTTCCCGGTAGACTCGGCCACTGGTAATGTCATTATTAGGTACTATAGCATTTTTGGTTCTCTGACTGAGATGGAGACCGCTTATGGTCGCCTTAAGAGGTCCAGGTTTTTGATAGAGGAAGAGGGAATCAGGGCAATGTCTTTGGCGTATCTAAAGAAAAGGAAGTTTTATAGTTTAGCTGAGTTCCTGAAGAGTGTTGGTCTAGGTAGAAGAAACTTGGGAAATCTTTTATGGAACCTATTGTTGCTATCCTATGCTGCCAACTTTAAGATGAAAAGCTTACAAAGAGAATTTCTGAGAATGGTGGAAGCCGGATTCCACCCTGATCTCACTACATTTAATATTCGTGCTCTGGCTTTTTCAAGAATGTCTCTACTCTGGGATCTCCATCTTACTCTTGAACACATGAAACATGAGAAAGTTGTTCCTGATCTTGTCACTTGTGGTTGTGTTGTTGACGCATACTTGGATAGAAGACTGGGAAGAAACTTGTATTTTGCTTTAAACAAAATGAACTTGGATGATTCTCCGGTAGTCTTAACAGATCTATTTGTATTTGAAGTTCTGGGGAAAGGCGACTTCCATGCAAGCTCAGAGGCATTTTTGGAGTTTCAGAAGCAGAAGGAATGGACTTATAGGAAGCTAATTTCAGTATATTTGAAAAAGCAATATCGGAGGGACCAGATATTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

385

Amino Acids

44.16

Weight (kDa)

8.79

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	85, 465
AccIII	TCCGGA	1 cut(s)	6
AciI	CCGC	3 cut(s)	65, 272, 534
AclWI	GGATC	1 cut(s)	846
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	2 cut(s)	349, 746
AcuI	CTGAAG	1 cut(s)	665
AfaI	GTAC	2 cut(s)	63, 497
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	6 cut(s)	238, 436, 819, 857, 1016, 1117
AjnI	CCWGG	1 cut(s)	557
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	2 cut(s)	524, 831
AlwI	GGATC	1 cut(s)	846
Aor13HI	TCCGGA	1 cut(s)	6
AoxI	GGCC	3 cut(s)	196, 406, 471
ApeKI	GCWGC	1 cut(s)	713
ApoI	RAATTY	2 cut(s)	349, 746
AspS9I	GGNCC	2 cut(s)	555, 1135
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	139, 328
AvaII	GGWCC	2 cut(s)	555, 1135
BbsI	GAAGAC	1 cut(s)	937
Bbv12I	GWGCWC	1 cut(s)	808
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	4 cut(s)	131, 415, 520, 852
BcgI	CGANNNNNNTGC	2 cut(s)	1022, 1056
BciT130I	CCWGG	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	524, 831
BfaI	CTAG	3 cut(s)	255, 380, 659
BfmI	CTRYAG	1 cut(s)	499
BfrI	CTTAAG	1 cut(s)	548
BglII	AGATCT	1 cut(s)	1000
BisI	GCNGC	1 cut(s)	714
BlsI	GCNGC	1 cut(s)	715
Bme1390I	CCNGG	2 cut(s)	461, 559
Bme18I	GGWCC	2 cut(s)	555, 1135
BmgT120I	GGNCC	2 cut(s)	555, 1135
BmiI	GGNNCC	2 cut(s)	692, 1136
BmrFI	CCNGG	2 cut(s)	461, 559
BmrI	ACTGGG	1 cut(s)	944
BmsI	GCATC	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	944
BpiI	GAAGAC	1 cut(s)	937
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
Bpu10I	CCTNAGC	2 cut(s)	108, 213
BpuEI	CTTGAG	2 cut(s)	143, 192
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	843
BsaI	GGTCTC	1 cut(s)	524
BsaWI	WCCGGW	3 cut(s)	6, 364, 985
Bse1I	ACTGG	2 cut(s)	481, 939
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	843
BseAI	TCCGGA	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	559
BseGI	GGATG	4 cut(s)	142, 232, 308, 982
BseJI	GATNNNNATC	1 cut(s)	843
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	6 cut(s)	122, 204, 513, 627, 743, 1062
BseNI	ACTGG	2 cut(s)	481, 939
BseXI	GCAGC	1 cut(s)	700
BshFI	GGCC	3 cut(s)	198, 408, 473
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	5 cut(s)	7, 365, 461, 768, 986
BslFI	GGGAC	1 cut(s)	1148
BsmAI	GTCTC	2 cut(s)	524, 831
BsmFI	GGGAC	1 cut(s)	1148
BsnI	GGCC	3 cut(s)	198, 408, 473
Bso31I	GGTCTC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp13I	TCCGGA	1 cut(s)	6
Bsp143I	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
BspACI	CCGC	3 cut(s)	65, 272, 534
BspANI	GGCC	3 cut(s)	198, 408, 473
BspCNI	CTCAG	6 cut(s)	121, 205, 514, 628, 744, 1061
BspEI	TCCGGA	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	692, 1136
BspPI	GGATC	1 cut(s)	846
BspTI	CTTAAG	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	481, 939
BssMI	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
Bst2UI	CCWGG	1 cut(s)	559
Bst6I	CTCTTC	3 cut(s)	18, 570, 641
BstAFI	CTTAAG	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	410, 1045
BstDEI	CTNAG	6 cut(s)	108, 213, 522, 636, 752, 1048
BstF5I	GGATG	4 cut(s)	142, 232, 308, 982
BstKTI	GATC	6 cut(s)	6, 339, 784, 841, 889, 1003
BstMAI	GTCTC	2 cut(s)	524, 831
BstMBI	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
BstNI	CCWGG	1 cut(s)	559
BstSCI	CCNGG	2 cut(s)	459, 557
BstSFI	CTRYAG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	700
BstV2I	GAAGAC	1 cut(s)	937
BstX2I	RGATCY	2 cut(s)	838, 1000
BstYI	RGATCY	2 cut(s)	838, 1000
BsuRI	GGCC	3 cut(s)	198, 408, 473
BtsCI	GGATG	4 cut(s)	142, 232, 308, 982
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	410, 1045
Cfr13I	GGNCC	2 cut(s)	555, 1135
CseI	GACGC	1 cut(s)	923
Csp6I	GTAC	2 cut(s)	62, 496
CviAII	CATG	6 cut(s)	12, 101, 185, 862, 869, 1040
CviQI	GTAC	2 cut(s)	62, 496
DdeI	CTNAG	6 cut(s)	108, 213, 522, 636, 752, 1048
DpnI	GATC	6 cut(s)	5, 338, 783, 840, 888, 1002
DpnII	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
DraI	TTTAAA	1 cut(s)	960
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	18, 570, 641
EarI	CTCTTC	3 cut(s)	18, 570, 641
EciI	GGCGGA	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	555, 1135
Eco57I	CTGAAG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	557
FaeI	CATG	6 cut(s)	15, 104, 188, 865, 872, 1043
FaqI	GGGAC	1 cut(s)	1148
FatI	CATG	6 cut(s)	11, 100, 184, 861, 868, 1039
FblI	GTMKAC	2 cut(s)	85, 465
Fnu4HI	GCNGC	1 cut(s)	714
FokI	GGATG	4 cut(s)	149, 239, 315, 989
Fsp4HI	GCNGC	1 cut(s)	714
FspBI	CTAG	3 cut(s)	255, 380, 659
GluI	GCNGC	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	198, 408, 473
HapII	CCGG	5 cut(s)	7, 365, 461, 768, 986
HgaI	GACGC	1 cut(s)	923
Hin1II	CATG	6 cut(s)	15, 104, 188, 865, 872, 1043
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	4 cut(s)	467, 582, 771, 980
HpaII	CCGG	5 cut(s)	7, 365, 461, 768, 986
HphI	GGTGA	2 cut(s)	139, 328
Hpy166II	GTNNAC	5 cut(s)	62, 86, 373, 466, 913
Hpy188I	TCNGA	8 cut(s)	136, 311, 336, 519, 753, 1051, 1071, 1131
Hpy188III	TCNNGA	6 cut(s)	7, 110, 643, 819, 854, 884
Hpy8I	GTNNAC	5 cut(s)	62, 86, 373, 466, 913
HpyAV	CCTTC	2 cut(s)	394, 1072
HpyCH4V	TGCA	1 cut(s)	1043
HpyF3I	CTNAG	6 cut(s)	108, 213, 522, 636, 752, 1048
Hsp92II	CATG	6 cut(s)	15, 104, 188, 865, 872, 1043
Kpn2I	TCCGGA	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	255, 380, 659
MaeIII	GTNAC	3 cut(s)	152, 360, 892
MalI	GATC	6 cut(s)	5, 338, 783, 840, 888, 1002
MboI	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
MboII	GAAGA	8 cut(s)	35, 202, 437, 587, 658, 678, 942, 951
MflI	RGATCY	2 cut(s)	838, 1000
MhlI	GDGCHC	1 cut(s)	808
MluCI	AATT	9 cut(s)	46, 219, 295, 324, 349, 416, 746, 1101, 1150
MlyI	GAGTC	1 cut(s)	461
MroI	TCCGGA	1 cut(s)	6
MseI	TTAA	8 cut(s)	80, 353, 414, 549, 723, 795, 959, 995
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	5 cut(s)	7, 365, 461, 768, 986
MspR9I	CCNGG	2 cut(s)	461, 559
MvaI	CCWGG	1 cut(s)	559
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
NlaIII	CATG	6 cut(s)	15, 104, 188, 865, 872, 1043
NlaIV	GGNNCC	2 cut(s)	692, 1136
NmeAIII	GCCGAG	2 cut(s)	174, 449
NmuCI	GTSAC	1 cut(s)	892
PfeI	GAWTC	3 cut(s)	582, 771, 980
PkrI	GCNGC	1 cut(s)	715
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	2 cut(s)	692, 1136
PspPI	GGNCC	2 cut(s)	555, 1135
PsrI	GAACNNNNNNTAC	2 cut(s)	1002, 1034
PsuI	RGATCY	2 cut(s)	838, 1000
RsaI	GTAC	2 cut(s)	63, 497
RsaNI	GTAC	2 cut(s)	62, 496
SaqAI	TTAA	8 cut(s)	80, 353, 414, 549, 723, 795, 959, 995
SatI	GCNGC	1 cut(s)	714
Sau3AI	GATC	6 cut(s)	3, 336, 781, 838, 886, 1000
Sau96I	GGNCC	2 cut(s)	555, 1135
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	461, 559
SduI	GDGCHC	1 cut(s)	808
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	2 cut(s)	555, 1135
SmlI	CTYRAG	3 cut(s)	122, 207, 548
SmoI	CTYRAG	3 cut(s)	122, 207, 548
Sse9I	AATT	9 cut(s)	46, 219, 295, 324, 349, 416, 746, 1101, 1150
SsiI	CCGC	3 cut(s)	65, 272, 534
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	3 cut(s)	255, 380, 659
StyD4I	CCNGG	2 cut(s)	459, 557
TaqI	TCGA	1 cut(s)	344
TasI	AATT	9 cut(s)	46, 219, 295, 324, 349, 416, 746, 1101, 1150
TfiI	GAWTC	3 cut(s)	582, 771, 980
Tru1I	TTAA	8 cut(s)	80, 353, 414, 549, 723, 795, 959, 995
Tru9I	TTAA	8 cut(s)	80, 353, 414, 549, 723, 795, 959, 995
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	1 cut(s)	713
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	5 cut(s)	243, 336, 743, 878, 983
TspRI	CASTG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	555, 1135
XapI	RAATTY	2 cut(s)	349, 746
XmiI	GTMKAC	2 cut(s)	85, 465
XspI	CTAG	3 cut(s)	255, 380, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.