Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Reverse (-)

5483057 .. 5485540

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGGCCATTCTTGTTCTGAGCACAGCCTCTGTTTCTGGGTCTCTCAATCCGAACCGTCTTTCTGTTCTTTCCCATCAATCACAACGTTCTCAAAATCGGGCTCTGGCACGCAAGGTTGTGTCGGAGCTGTTTGATGTTTATGGTAATGTGGGATCGTTTGGAAAGGTGAATGAGATTGTCGGTCAGATAAGATCAAGGAATTTAAGTTTGTTACCGCAGGTTTACTCCCTAGCTATCTCTTGCTTTGGGAAGGGAGGGCAGCTTGAATTGATGGAAGATACATTGAAGGAAATGGTATCAAGGGGATTCCCTGTAGACTCGGCCACTGGGAATGTCTTCATTAGGTACTATAGCATTTTTGGTTCTCTGACTGAGATGGAAACCGCCTATGATCGCCTTAAGAGGTCCAGGTTTTTGATAGAGGAAGAGGGAATCAGGGCAATGTCGTTGGCGTATCTAAAGAAAAGGAAGTTCTATAGTTTAGCTGAGTTCCTTAAGAGTGTTGGTCTAGGTAGAAGAAACTTGGGAAATCTTCTATGGAACCTGCTGTTGCTATCCTATGCTGCCAATTTTAAGATGAAAACCTTACAAAGAGAATTTCTGAGAATGGTGGAAGCAGGATTCCACCCTGATCTCACTACATTTAATATTCGTGCCCTGGCTTTTTCGAGAATGTCTCTACTCTGGGATCTCCATCTTACTCTTGAACACATGAAACATGTGAAAGTTGTTCCTGATCTGGTCACTTGTGGTTGTATTGTTGACGCATACTTGGATAGAAGACTGGGAAGAAACTTGTATTTTGCTTTAAACAAAATGAACTTGGATGATTCTCCGGTAGTCTTAACAGATCCATTTGTATTTGAAGTTCTGGGAAAAGGCGATTTCCATGCAAGCTCAGAGGCATTTTTGGAGTTTCGGAAGCAGAAGGAATGGACTTATCAGAAGTTAATTTCAGTATATTTGAAAAAGCAATATCGAAGGGACCAGATATTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

337

Amino Acids

38.64

Weight (kDa)

9.53

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	211, 555
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	2 cut(s)	218, 387
AclI	AACGTT	1 cut(s)	88
AclWI	GGATC	3 cut(s)	163, 699, 848
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	202, 599
AfaI	GTAC	1 cut(s)	350
AflII	CTTAAG	2 cut(s)	401, 497
AflIII	ACRYGT	1 cut(s)	721
AgsI	TTSAA	5 cut(s)	269, 289, 710, 869, 970
AjnI	CCWGG	2 cut(s)	410, 660
AluBI	AGCT	5 cut(s)	130, 236, 265, 488, 900
AluI	AGCT	5 cut(s)	130, 236, 265, 488, 900
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	48, 684
AlwI	GGATC	3 cut(s)	163, 699, 848
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	6, 324
ApeKI	GCWGC	2 cut(s)	262, 566
ApoI	RAATTY	2 cut(s)	202, 599
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	408, 988
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	408, 988
BaeGI	GKGCMC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	2 cut(s)	331, 790
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	274, 553
BccI	CCATC	4 cut(s)	84, 268, 373, 705
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	2 cut(s)	412, 662
BcoDI	GTCTC	2 cut(s)	48, 684
BfaI	CTAG	2 cut(s)	233, 512
BfmI	CTRYAG	3 cut(s)	315, 352, 478
BfrI	CTTAAG	2 cut(s)	401, 497
BfuAI	ACCTGC	2 cut(s)	211, 555
BisI	GCNGC	2 cut(s)	263, 567
BlsI	GCNGC	2 cut(s)	264, 568
Bme1390I	CCNGG	2 cut(s)	412, 662
Bme18I	GGWCC	2 cut(s)	408, 988
BmgT120I	GGNCC	2 cut(s)	408, 988
BmiI	GGNNCC	2 cut(s)	545, 989
BmrFI	CCNGG	2 cut(s)	412, 662
BmrI	ACTGGG	2 cut(s)	339, 797
BmuI	ACTGGG	2 cut(s)	339, 797
BpiI	GAAGAC	2 cut(s)	331, 790
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	838
Bse1I	ACTGG	2 cut(s)	334, 792
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	412, 662
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	1 cut(s)	835
BseJI	GATNNNNATC	1 cut(s)	696
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	5 cut(s)	11, 366, 480, 596, 915
BseNI	ACTGG	2 cut(s)	334, 792
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	274, 553
BshFI	GGCC	2 cut(s)	8, 326
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	839
BslFI	GGGAC	1 cut(s)	1001
BsmAI	GTCTC	2 cut(s)	48, 684
BsmFI	GGGAC	1 cut(s)	1001
BsnI	GGCC	2 cut(s)	8, 326
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	3 cut(s)	26, 106, 661
Bsp143I	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
BspACI	CCGC	2 cut(s)	218, 387
BspANI	GGCC	2 cut(s)	8, 326
BspCNI	CTCAG	5 cut(s)	12, 367, 481, 597, 914
BspLI	GGNNCC	2 cut(s)	545, 989
BspMI	ACCTGC	2 cut(s)	211, 555
BspPI	GGATC	3 cut(s)	163, 699, 848
BspTI	CTTAAG	2 cut(s)	401, 497
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	334, 792
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
Bst2UI	CCWGG	2 cut(s)	412, 662
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	2 cut(s)	401, 497
BstC8I	GCNNGC	2 cut(s)	112, 898
BstDEI	CTNAG	5 cut(s)	20, 375, 489, 605, 901
BstF5I	GGATG	1 cut(s)	835
BstKTI	GATC	7 cut(s)	158, 197, 397, 637, 694, 742, 856
BstMAI	GTCTC	2 cut(s)	48, 684
BstMBI	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
BstNI	CCWGG	2 cut(s)	412, 662
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	410, 660
BstSFI	CTRYAG	3 cut(s)	315, 352, 478
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	274, 553
BstV2I	GAAGAC	2 cut(s)	331, 790
BstX2I	RGATCY	2 cut(s)	691, 853
BstYI	RGATCY	2 cut(s)	691, 853
BsuRI	GGCC	2 cut(s)	8, 326
BtsCI	GGATG	1 cut(s)	835
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	2 cut(s)	211, 555
Cac8I	GCNNGC	2 cut(s)	112, 898
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	408, 988
CseI	GACGC	1 cut(s)	776
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	3 cut(s)	715, 722, 893
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	5 cut(s)	20, 375, 489, 605, 901
DpnI	GATC	7 cut(s)	157, 196, 396, 636, 693, 741, 855
DpnII	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
DraI	TTTAAA	1 cut(s)	813
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	408, 988
EcoRII	CCWGG	2 cut(s)	410, 660
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	3 cut(s)	718, 725, 896
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	3 cut(s)	714, 721, 892
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	263, 567
FokI	GGATG	1 cut(s)	842
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	263, 567
FspBI	CTAG	2 cut(s)	233, 512
GluI	GCNGC	2 cut(s)	263, 567
HaeIII	GGCC	2 cut(s)	8, 326
HapII	CCGG	1 cut(s)	839
HgaI	GACGC	1 cut(s)	776
Hin1II	CATG	3 cut(s)	718, 725, 896
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	5 cut(s)	309, 320, 435, 624, 833
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	226, 319, 766
Hpy188I	TCNGA	9 cut(s)	21, 54, 127, 189, 372, 606, 904, 924, 948
Hpy188III	TCNNGA	3 cut(s)	672, 707, 737
Hpy8I	GTNNAC	3 cut(s)	226, 319, 766
HpyAV	CCTTC	4 cut(s)	247, 283, 925, 978
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	896
HpyF3I	CTNAG	5 cut(s)	20, 375, 489, 605, 901
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	718, 725, 896
Kzo9I	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	2 cut(s)	274, 553
MaeI	CTAG	2 cut(s)	233, 512
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	213, 745
MalI	GATC	7 cut(s)	157, 196, 396, 636, 693, 741, 855
MboI	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
MboII	GAAGA	7 cut(s)	290, 331, 440, 527, 531, 795, 804
MflI	RGATCY	2 cut(s)	691, 853
MhlI	GDGCHC	3 cut(s)	26, 106, 661
MluCI	AATT	6 cut(s)	202, 269, 571, 599, 954, 1003
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	40, 251, 399, 418, 424, 898
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	8 cut(s)	206, 402, 498, 576, 648, 812, 848, 953
MspCI	CTTAAG	2 cut(s)	401, 497
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	2 cut(s)	412, 662
MvaI	CCWGG	2 cut(s)	412, 662
NdeII	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
NlaIII	CATG	3 cut(s)	718, 725, 896
NlaIV	GGNNCC	2 cut(s)	545, 989
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	745
NspI	RCATGY	1 cut(s)	725
PciI	ACATGT	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	4 cut(s)	309, 435, 624, 833
PkrI	GCNGC	2 cut(s)	264, 568
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PscI	ACATGT	1 cut(s)	721
Psp1406I	AACGTT	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	410, 660
PspGI	CCWGG	2 cut(s)	410, 660
PspN4I	GGNNCC	2 cut(s)	545, 989
PspPI	GGNCC	2 cut(s)	408, 988
PsrI	GAACNNNNNNTAC	2 cut(s)	855, 887
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	691, 853
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	8 cut(s)	206, 402, 498, 576, 648, 812, 848, 953
SatI	GCNGC	2 cut(s)	263, 567
Sau3AI	GATC	7 cut(s)	155, 194, 394, 634, 691, 739, 853
Sau96I	GGNCC	2 cut(s)	408, 988
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	412, 662
SduI	GDGCHC	3 cut(s)	26, 106, 661
SfcI	CTRYAG	3 cut(s)	315, 352, 478
SinI	GGWCC	2 cut(s)	408, 988
SmlI	CTYRAG	2 cut(s)	401, 497
SmoI	CTYRAG	2 cut(s)	401, 497
Sse9I	AATT	6 cut(s)	202, 269, 571, 599, 954, 1003
SsiI	CCGC	2 cut(s)	218, 387
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	233, 512
StyD4I	CCNGG	2 cut(s)	410, 660
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	671, 982
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	6 cut(s)	202, 269, 571, 599, 954, 1003
TfiI	GAWTC	4 cut(s)	309, 435, 624, 833
Tru1I	TTAA	8 cut(s)	206, 402, 498, 576, 648, 812, 848, 953
Tru9I	TTAA	8 cut(s)	206, 402, 498, 576, 648, 812, 848, 953
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	2 cut(s)	262, 566
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	4 cut(s)	331, 596, 731, 836
TspRI	CASTG	1 cut(s)	334
Vha464I	CTTAAG	2 cut(s)	401, 497
VpaK11BI	GGWCC	2 cut(s)	408, 988
XapI	RAATTY	2 cut(s)	202, 599
XceI	RCATGY	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	2 cut(s)	233, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.