Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015946

Physical Location & Seq

Genomic Coordinates Reverse (-)

15354535 .. 15355494

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACATTCTTCATCGAAGACACTAGTCTCATCATCAGCCACGTTCTCTACAAAACGGCACTTATCATCACCGTTTTACGATGGATCTTTGCATGGATCCTCCGTTACCGCTCAAGATCCTCCTCATCATCATCATCTCAATCCTCCTCTTCTCCTTCTATTTCATCACAAACCATCAAAGAAAGCCTAGCCGTGTCCGCTTTCCGCGACGCGGTGGAGAGATCTCCCGCGGCGATAAACGACATGTGTGCCGTGTGTCTAGGAGATCTTGAAGACGAGGACGAAATCAGAGAGCTTAGGAACTGTACTCACGTGTTTCATCGTGATTGTATTGACCGATGGCTAGATTATGAATGTTGCGGCGGTGATGATGATAACCACCGTACTTGTCCCCTATGTCGAACGCCGTTGCTTCCATCTTTCACTGATTACTCAACCGTTACTCAAACTAGTTGGGCTGTTGAACGACTTCTTTACCTCTTCGGCGACGATCTTCTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

167

Amino Acids

19.0

Weight (kDa)

4.78

Isoelectric Point (pI)

70.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	79 - 134	4.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	81 - 134	2.1e-09	Ring finger domain
zf-RING_11	PF17123	83 - 111	5.1e-09	RING-like zinc finger
zf-C3HC4	PF00097	83 - 133	4.5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43430 AT5G20885
fragaria_vesca	FvH4_1g09671
malus_domestica	MD15G1225600.v1.1
prunus_persica	Prupe.7G189400_v2.0.a1
pyrus_communis	pycom15g20050
rosa_chinensis	RchiOBHm_Chr2g0096531
rosa_multiflora	Rmu_sc0004096.1_g000010
rosa_roxburghii	Rroxscaffold_2G00145560
rosa_rugosa	Rorug02G0058300
rosa_samantha	Rh2AG105400 Rh2BG107700 Rh2CG109500 Rh2DG108500
rosa_wichuraiana	Rw2G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	3 cut(s)	207, 212, 230
AciI	CCGC	8 cut(s)	109, 198, 205, 212, 228, 230, 360, 363
AclWI	GGATC	4 cut(s)	91, 92, 104, 111
AcvI	CACGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	307, 385
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	2 cut(s)	243, 312
AgsI	TTSAA	2 cut(s)	272, 464
AhlI	ACTAGT	2 cut(s)	23, 449
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	4 cut(s)	91, 92, 104, 111
Asp700I	GAANNNNTTC	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	61, 377
BamHI	GGATCC	1 cut(s)	96
BbrPI	CACGTG	1 cut(s)	313
BbsI	GAAGAC	2 cut(s)	24, 279
BccI	CCATC	4 cut(s)	75, 182, 333, 424
BceAI	ACGGC	4 cut(s)	72, 176, 236, 391
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcoDI	GTCTC	1 cut(s)	32
BcuI	ACTAGT	2 cut(s)	23, 449
BfaI	CTAG	5 cut(s)	24, 188, 260, 344, 450
BglII	AGATCT	2 cut(s)	221, 265
BisI	GCNGC	2 cut(s)	231, 361
BlsI	GCNGC	2 cut(s)	232, 362
BmiI	GGNNCC	1 cut(s)	98
BoxI	GACNNNNGTC	1 cut(s)	24
BpiI	GAAGAC	2 cut(s)	24, 279
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	112, 136
Bsh1236I	CGCG	3 cut(s)	207, 212, 230
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	375
Bsp143I	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
BspACI	CCGC	8 cut(s)	109, 198, 205, 212, 228, 230, 360, 363
BspFNI	CGCG	3 cut(s)	207, 212, 230
BspLI	GGNNCC	1 cut(s)	98
BspPI	GGATC	4 cut(s)	91, 92, 104, 111
BsrBI	CCGCTC	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
Bst4CI	ACNGT	4 cut(s)	73, 305, 383, 439
Bst6I	CTCTTC	2 cut(s)	154, 485
BstBAI	YACGTR	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	228
BstFNI	CGCG	3 cut(s)	207, 212, 230
BstKTI	GATC	6 cut(s)	87, 99, 119, 224, 268, 493
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	247
BstPAI	GACNNNNGTC	1 cut(s)	24
BstUI	CGCG	3 cut(s)	207, 212, 230
BstV2I	GAAGAC	2 cut(s)	24, 279
BstX2I	RGATCY	5 cut(s)	84, 96, 116, 221, 265
BstYI	RGATCY	5 cut(s)	84, 96, 116, 221, 265
BtgI	CCRYGG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	423
Cfr42I	CCGCGG	1 cut(s)	231
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	306, 384
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviAII	CATG	2 cut(s)	93, 244
CviJI	RGCY	6 cut(s)	39, 186, 191, 295, 343, 458
CviKI_1	RGCY	6 cut(s)	39, 186, 191, 295, 343, 458
CviQI	GTAC	2 cut(s)	306, 384
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	6 cut(s)	86, 98, 118, 223, 267, 492
DpnII	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
Eam1104I	CTCTTC	2 cut(s)	154, 485
EarI	CTCTTC	2 cut(s)	154, 485
Eco72I	CACGTG	1 cut(s)	313
FaeI	CATG	2 cut(s)	96, 247
FaiI	YATR	4 cut(s)	94, 245, 351, 397
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	2 cut(s)	92, 243
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	231, 361
Fsp4HI	GCNGC	2 cut(s)	231, 361
FspBI	CTAG	5 cut(s)	24, 188, 260, 344, 450
GluI	GCNGC	2 cut(s)	231, 361
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	96, 247
HphI	GGTGA	2 cut(s)	61, 377
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	3 cut(s)	114, 269, 323
Hpy99I	CGWCG	2 cut(s)	212, 491
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	4 cut(s)	73, 305, 383, 439
HpyCH4IV	ACGT	2 cut(s)	42, 312
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	2 cut(s)	42, 312
Hsp92II	CATG	2 cut(s)	96, 247
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
MaeI	CTAG	5 cut(s)	24, 188, 260, 344, 450
MaeII	ACGT	2 cut(s)	42, 312
MaeIII	GTNAC	2 cut(s)	104, 439
MalI	GATC	6 cut(s)	86, 98, 118, 223, 267, 492
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
MboII	GAAGA	6 cut(s)	29, 141, 284, 472, 485, 488
MflI	RGATCY	5 cut(s)	84, 96, 116, 221, 265
MnlI	CCTC	7 cut(s)	110, 130, 133, 154, 157, 271, 488
MroXI	GAANNNNTTC	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	230
MvnI	CGCG	3 cut(s)	207, 212, 230
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
NlaIII	CATG	2 cut(s)	96, 247
NlaIV	GGNNCC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	247
PciI	ACATGT	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	232, 362
PmaCI	CACGTG	1 cut(s)	313
PmlI	CACGTG	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	313
PscI	ACATGT	1 cut(s)	243
PshAI	GACNNNNGTC	1 cut(s)	24
PspCI	CACGTG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	98
PsuI	RGATCY	5 cut(s)	84, 96, 116, 221, 265
RsaI	GTAC	2 cut(s)	307, 385
RsaNI	GTAC	2 cut(s)	306, 384
SacII	CCGCGG	1 cut(s)	231
SatI	GCNGC	2 cut(s)	231, 361
Sau3AI	GATC	6 cut(s)	84, 96, 116, 221, 265, 490
SetI	ASST	4 cut(s)	45, 297, 315, 480
Sfr303I	CCGCGG	1 cut(s)	231
SgrBI	CCGCGG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SpeI	ACTAGT	2 cut(s)	23, 449
SsiI	CCGC	8 cut(s)	109, 198, 205, 212, 228, 230, 360, 363
SspMI	CTAG	5 cut(s)	24, 188, 260, 344, 450
TaaI	ACNGT	4 cut(s)	73, 305, 383, 439
TaiI	ACGT	2 cut(s)	45, 315
TaqI	TCGA	2 cut(s)	15, 400
TaqII	GACCGA	1 cut(s)	351
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	2 cut(s)	233, 363
TscAI	CASTG	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	153, 308, 366
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	430
XceI	RCATGY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	5 cut(s)	24, 188, 260, 344, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.