Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015946

Physical Location & Seq

Genomic Coordinates Reverse (-)

18337256 .. 18338017

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1225600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTTTCTTCGCTGCTCGGATTTGATCCGATGGGTTTCTTCGTCTTCGACGACTCGTCCTCGTCGGGCTTGATACTTAGCCACGTACTGTACAAAGCGGCATTTGTAATTGCTTTGATGAGATGGGTTGTGTTCTGGGCGCTCAGATTCAGACAAACACTCTCCTCCTCCTCCGCTTCCTCCACCGCCGAGGAGGGTTTTGATTTCCTACAGGCCGAGTCCGATAAAGAATCTTGCTCCTCTTCTTCCTCCGCTTCTACCCAACTGATCAGGGACTGTCTGATTCAGACCACCTTCGGAGAAATCGCAGACCGGAGAGGGAATTACGGAAGCAACGGCGGCGGCGACTGCGACACGTGCGCGGTGTGCTTGAGCCAGCTGGAGACGGGGGACGAGGTGAGGGAGATGCGGAACTGCTGCCACGTGTTCCACACCGAGTGCATTGACAGGTGGCTCGAGTACAATGATGATCATCATCAGCACCACCATCATGATAATCATGATGAGGATAATCACAAGACTTGCCCGCTCTGCAGGACTCCATTGCTGACGCCATCGCAGATACAGAGCCTGAGCTGGGATCACAGCAGATCGCAGCCCAGCTGGGCCGTTGAGAGACTGCTCTACCTTTTTGGGGATGATCTGGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

218

Amino Acids

24.54

Weight (kDa)

4.89

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	118 - 179	3.8e-07	Ring finger domain
zf-RING_11	PF17123	120 - 148	7e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	120 - 156	5.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43430 AT5G20885
fragaria_vesca	FvH4_1g09671
malus_domestica	MD15G1225600.v1.1
prunus_persica	Prupe.7G189400_v2.0.a1
pyrus_communis	pycom15g20050
rosa_chinensis	RchiOBHm_Chr2g0096531
rosa_multiflora	Rmu_sc0004096.1_g000010
rosa_roxburghii	Rroxscaffold_2G00145560
rosa_rugosa	Rorug02G0058300
rosa_samantha	Rh2AG105400 Rh2BG107700 Rh2CG109500 Rh2DG108500
rosa_wichuraiana	Rw2G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	529
AccII	CGCG	1 cut(s)	362
AciI	CCGC	9 cut(s)	98, 174, 186, 252, 339, 342, 362, 409, 527
AclWI	GGATC	2 cut(s)	20, 588
AcvI	CACGTG	2 cut(s)	357, 424
AcyI	GRCGYC	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	438
AfaI	GTAC	3 cut(s)	87, 92, 461
AfiI	CCNNNNNNNGG	2 cut(s)	577, 634
AflIII	ACRYGT	2 cut(s)	354, 423
AhdI	GACNNNNNGTC	1 cut(s)	55
AluBI	AGCT	3 cut(s)	379, 576, 603
AluI	AGCT	3 cut(s)	379, 576, 603
Alw26I	GTCTC	2 cut(s)	377, 610
AlwI	GGATC	2 cut(s)	20, 588
AlwNI	CAGNNNCTG	2 cut(s)	276, 571
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	213, 606
ApeKI	GCWGC	3 cut(s)	13, 417, 595
AspLEI	GCGC	2 cut(s)	142, 362
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	1 cut(s)	455
BbrPI	CACGTG	2 cut(s)	357, 424
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	404, 607
BccI	CCATC	4 cut(s)	25, 117, 495, 562
BceAI	ACGGC	2 cut(s)	352, 593
BclI	TGATCA	2 cut(s)	267, 469
BcoDI	GTCTC	2 cut(s)	377, 610
BfmI	CTRYAG	2 cut(s)	209, 532
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
BlsI	GCNGC	6 cut(s)	15, 100, 341, 344, 419, 597
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	606
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	391
BsaAI	YACGTR	3 cut(s)	85, 357, 424
BsaBI	GATNNNNATC	2 cut(s)	471, 474
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 634
Bse3DI	GCAATG	1 cut(s)	542
Bse8I	GATNNNNATC	2 cut(s)	471, 474
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	643
BseJI	GATNNNNATC	2 cut(s)	471, 474
BseLI	CCNNNNNNNGG	2 cut(s)	577, 634
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	2 cut(s)	157, 563
BseRI	GAGGAG	5 cut(s)	154, 157, 160, 206, 229
BseXI	GCAGC	2 cut(s)	404, 607
BseYI	CCCAGC	3 cut(s)	576, 599, 603
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	215, 608
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	2 cut(s)	287, 404
BslI	CCNNNNNNNGG	2 cut(s)	577, 634
BsmAI	GTCTC	2 cut(s)	377, 610
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	287, 404
BsnI	GGCC	2 cut(s)	215, 608
BsoBI	CYCGRG	1 cut(s)	455
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
BspACI	CCGC	9 cut(s)	98, 174, 186, 252, 339, 342, 362, 409, 527
BspANI	GGCC	2 cut(s)	215, 608
BspCNI	CTCAG	2 cut(s)	156, 564
BspFNI	CGCG	1 cut(s)	362
BspHI	TCATGA	2 cut(s)	490, 499
BspMAI	CTGCAG	1 cut(s)	536
BspPI	GGATC	2 cut(s)	20, 588
BsrBI	CCGCTC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
BssNI	GRCGYC	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	90, 278
Bst6I	CTCTTC	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	3 cut(s)	85, 357, 424
BstC8I	GCNNGC	2 cut(s)	377, 527
BstDEI	CTNAG	3 cut(s)	77, 143, 572
BstF5I	GGATG	1 cut(s)	643
BstFNI	CGCG	1 cut(s)	362
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 362
BstKTI	GATC	6 cut(s)	28, 270, 472, 583, 593, 643
BstMAI	GTCTC	2 cut(s)	377, 610
BstMBI	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	339, 348, 357, 366, 531
BstSFI	CTRYAG	2 cut(s)	209, 532
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	404, 607
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	215, 608
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	643
Cac8I	GCNNGC	2 cut(s)	377, 527
CaiI	CAGNNNCTG	2 cut(s)	276, 571
CciI	TCATGA	2 cut(s)	490, 499
CfoI	GCGC	2 cut(s)	142, 362
Cfr13I	GGNCC	1 cut(s)	606
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	3 cut(s)	86, 91, 460
CviAII	CATG	2 cut(s)	491, 500
CviQI	GTAC	3 cut(s)	86, 91, 460
DdeI	CTNAG	3 cut(s)	77, 143, 572
DpnI	GATC	6 cut(s)	27, 269, 471, 582, 592, 642
DpnII	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
DraIII	CACNNNGTG	1 cut(s)	438
DriI	GACNNNNNGTC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	247
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	247
Eco72I	CACGTG	2 cut(s)	357, 424
Eco88I	CYCGRG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	2 cut(s)	494, 503
FaiI	YATR	2 cut(s)	492, 501
FaqI	GGGAC	2 cut(s)	287, 404
FatI	CATG	2 cut(s)	490, 499
FauI	CCCGC	1 cut(s)	534
FbaI	TGATCA	2 cut(s)	267, 469
Fnu4HI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
GlaI	GCGC	2 cut(s)	141, 361
GluI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
GsaI	CCCAGC	3 cut(s)	580, 603, 607
GsuI	CTGGAG	1 cut(s)	401
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	215, 608
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	2 cut(s)	142, 362
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	2 cut(s)	494, 503
Hin6I	GCGC	2 cut(s)	140, 360
HinP1I	GCGC	2 cut(s)	140, 360
HinfI	GANTC	6 cut(s)	53, 147, 218, 230, 283, 538
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	8 cut(s)	20, 30, 146, 152, 223, 282, 288, 299
Hpy188III	TCNNGA	3 cut(s)	491, 500, 644
Hpy99I	CGWCG	2 cut(s)	53, 67
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	90, 278
HpyCH4IV	ACGT	3 cut(s)	84, 356, 423
HpyCH4V	TGCA	2 cut(s)	441, 534
HpyF10VI	GCNNNNNNNGC	5 cut(s)	339, 348, 357, 366, 531
HpyF3I	CTNAG	3 cut(s)	77, 143, 572
HpySE526I	ACGT	3 cut(s)	84, 356, 423
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	2 cut(s)	494, 503
HspAI	GCGC	2 cut(s)	140, 360
Ksp22I	TGATCA	2 cut(s)	267, 469
Kzo9I	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	404, 607
LweI	GCATC	1 cut(s)	396
MaeII	ACGT	3 cut(s)	84, 356, 423
MalI	GATC	6 cut(s)	27, 269, 471, 582, 592, 642
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
MboII	GAAGA	4 cut(s)	31, 37, 234, 237
MluCI	AATT	2 cut(s)	108, 322
MlyI	GAGTC	3 cut(s)	47, 227, 532
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	379, 603
MspI	CCGG	1 cut(s)	313
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	5 cut(s)	339, 348, 357, 366, 531
NdeII	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
NlaIII	CATG	2 cut(s)	494, 503
NmeAIII	GCCGAG	2 cut(s)	214, 241
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	2 cut(s)	490, 499
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 342
PfeI	GAWTC	3 cut(s)	147, 230, 283
PkrI	GCNGC	6 cut(s)	15, 100, 341, 344, 419, 597
PleI	GAGTC	3 cut(s)	47, 226, 532
PmaCI	CACGTG	2 cut(s)	357, 424
PmlI	CACGTG	2 cut(s)	357, 424
PpsI	GAGTC	3 cut(s)	47, 226, 532
Ppu21I	YACGTR	3 cut(s)	85, 357, 424
PspCI	CACGTG	2 cut(s)	357, 424
PspFI	CCCAGC	3 cut(s)	576, 599, 603
PspPI	GGNCC	1 cut(s)	606
PspXI	VCTCGAGB	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	536
PstNI	CAGNNNCTG	2 cut(s)	276, 571
PvuII	CAGCTG	2 cut(s)	379, 603
RsaI	GTAC	3 cut(s)	87, 92, 461
RsaNI	GTAC	3 cut(s)	86, 91, 460
RseI	CAYNNNNRTG	1 cut(s)	489
SatI	GCNGC	6 cut(s)	14, 99, 340, 343, 418, 596
Sau3AI	GATC	6 cut(s)	25, 267, 469, 580, 590, 640
Sau96I	GGNCC	1 cut(s)	606
SchI	GAGTC	3 cut(s)	47, 227, 532
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	2 cut(s)	209, 532
Sfr274I	CTCGAG	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	370, 455
SmoI	CTYRAG	2 cut(s)	370, 455
Sse9I	AATT	2 cut(s)	108, 322
SsiI	CCGC	9 cut(s)	98, 174, 186, 252, 339, 342, 362, 409, 527
TaaI	ACNGT	2 cut(s)	90, 278
TaiI	ACGT	3 cut(s)	87, 359, 426
TaqI	TCGA	2 cut(s)	48, 456
TasI	AATT	2 cut(s)	108, 322
TatI	WGTACW	2 cut(s)	90, 459
TauI	GCSGC	3 cut(s)	101, 342, 345
TfiI	GAWTC	3 cut(s)	147, 230, 283
TseI	GCWGC	3 cut(s)	13, 417, 595
TspGWI	ACGGA	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.