Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015946

Physical Location & Seq

Genomic Coordinates Forward (+)

83447593 .. 83448183

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGTTTAGTTGTCGATACATTCTCGTCTTCGGACCTGTTAGTCAGCGACGTCCTGTACAAGGCGGCCTTCGTAATCGCGCTGCTCAGATGGGCCTTCTACTGGGCCCTGAGACTCCGCCGGAGAATCTTGTCCGACGAGGATTCCGATCTGTTAGATGCGGAGCTTGACTATGAAGTAGTGCAGTCATCTTCCTGTACGACTTCTTCTCCTTCGTCGTCGACCCAGCTGATCAGAGACAGCCTGATACGGACGACGTTCGAGGAGGTGACCAGACGACAGGGAAACAGCTGTCGTTGGGACACCTGCGCAGTCTGCCTGAGCCAGTTGGAGATGGGGGACGAGGTCCGGGAGCTGAGGAACTGCTGCCACGTCTTCCACACCGACTGCATCGACAGGTGGCTGGACTACAACGGCCATGATCATCACGATCACGGCGCCCATGACGACAACCACAAGACGTGCCCGCTCTGCAGGACGCCGCTGCTGACGTCATCGCAGATCCAGAGCCTGAGCTGGGAGCAGAGGTCTCAGCCTAGCTGGGCTGTGGAGAGACTGCTCTATCTTTTTGGGGAGGATCTGGTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

196

Amino Acids

22.58

Weight (kDa)

4.96

Isoelectric Point (pI)

66.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	101 - 159	9.5e-09	Ring finger domain
zf-RING_11	PF17123	103 - 131	3.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	103 - 138	4.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43430 AT5G20885
fragaria_vesca	FvH4_1g09671
malus_domestica	MD15G1225600.v1.1
prunus_persica	Prupe.7G189400_v2.0.a1
pyrus_communis	pycom15g20050
rosa_chinensis	RchiOBHm_Chr2g0096531
rosa_multiflora	Rmu_sc0004096.1_g000010
rosa_roxburghii	Rroxscaffold_2G00145560
rosa_rugosa	Rorug02G0058300
rosa_samantha	Rh2AG105400 Rh2BG107700 Rh2CG109500 Rh2DG108500
rosa_wichuraiana	Rw2G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
AasI	GACNNNNNNGTC	1 cut(s)	41
AatII	GACGTC	2 cut(s)	54, 494
Acc16I	TGCGCA	1 cut(s)	310
Acc36I	ACCTGC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	221
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	65, 118, 161, 467, 482
AclWI	GGATC	2 cut(s)	496, 585
AcoI	YGGCCR	1 cut(s)	415
AcyI	GRCGYC	4 cut(s)	51, 438, 479, 491
AfaI	GTAC	2 cut(s)	59, 199
AfiI	CCNNNNNNNGG	3 cut(s)	61, 102, 517
AjiI	CACGTC	2 cut(s)	373, 462
AluBI	AGCT	6 cut(s)	166, 229, 291, 355, 516, 540
AluI	AGCT	6 cut(s)	166, 229, 291, 355, 516, 540
Alw26I	GTCTC	4 cut(s)	106, 231, 534, 547
AlwI	GGATC	2 cut(s)	496, 585
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	4 cut(s)	66, 93, 105, 415
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	82, 366, 484
AspLEI	GCGC	3 cut(s)	82, 311, 440
AspS9I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	34, 346
BaeGI	GKGCMC	2 cut(s)	109, 467
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BbsI	GAAGAC	2 cut(s)	21, 367
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	69, 353, 471
BccI	CCATC	2 cut(s)	84, 328
BceAI	ACGGC	2 cut(s)	430, 451
BclI	TGATCA	2 cut(s)	231, 421
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	4 cut(s)	106, 231, 534, 547
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	2 cut(s)	472, 587
BfoI	RGCGCY	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	5 cut(s)	66, 83, 367, 482, 485
BlsI	GCNGC	5 cut(s)	67, 84, 368, 483, 486
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	34, 346
BmgBI	CACGTC	2 cut(s)	373, 462
BmgT120I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
BmiI	GGNNCC	2 cut(s)	107, 439
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	148, 399
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	21, 367
Bpu10I	CCTNAGC	3 cut(s)	320, 356, 512
BpuMI	CCSGG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	147
BsaHI	GRCGYC	4 cut(s)	51, 438, 479, 491
BsaI	GGTCTC	1 cut(s)	534
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 512, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 102, 517
Bse1I	ACTGG	2 cut(s)	107, 325
Bse8I	GATNNNNATC	1 cut(s)	147
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	61, 102, 517
BseMII	CTCAG	6 cut(s)	100, 101, 311, 347, 503, 545
BseNI	ACTGG	2 cut(s)	107, 325
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	109, 467
BseXI	GCAGC	3 cut(s)	69, 353, 471
BseYI	CCCAGC	3 cut(s)	225, 516, 540
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	4 cut(s)	68, 95, 107, 417
BshNI	GGYRCC	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	121, 349
BslFI	GGGAC	2 cut(s)	314, 353
BslI	CCNNNNNNNGG	3 cut(s)	61, 102, 517
BsmAI	GTCTC	4 cut(s)	106, 231, 534, 547
BsmFI	GGGAC	2 cut(s)	314, 353
BsnI	GGCC	4 cut(s)	68, 95, 107, 417
Bso31I	GGTCTC	1 cut(s)	534
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	109, 467
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
BspACI	CCGC	5 cut(s)	65, 118, 161, 467, 482
BspANI	GGCC	4 cut(s)	68, 95, 107, 417
BspCNI	CTCAG	6 cut(s)	99, 102, 312, 348, 504, 544
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	107, 439
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	496, 585
BspT107I	GGYRCC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	534
BsrBI	CCGCTC	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	107, 325
BssMI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
BssNI	GRCGYC	4 cut(s)	51, 438, 479, 491
BstACI	GRCGYC	4 cut(s)	51, 438, 479, 491
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	6 cut(s)	86, 110, 320, 356, 512, 531
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	3 cut(s)	82, 311, 440
BstKTI	GATC	6 cut(s)	151, 234, 424, 433, 504, 580
BstMAI	GTCTC	4 cut(s)	106, 231, 534, 547
BstMBI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 471
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	472, 587
BstSLI	GKGCMC	2 cut(s)	109, 467
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	69, 353, 471
BstV2I	GAAGAC	2 cut(s)	21, 367
BstX2I	RGATCY	2 cut(s)	501, 577
BstYI	RGATCY	2 cut(s)	501, 577
BsuRI	GGCC	4 cut(s)	68, 95, 107, 417
BtgZI	GCGATG	1 cut(s)	480
BtrI	CACGTC	2 cut(s)	373, 462
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	467
CaiI	CAGNNNCTG	1 cut(s)	511
CfoI	GCGC	3 cut(s)	82, 311, 440
Cfr13I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	58, 198
CviAII	CATG	2 cut(s)	419, 443
CviQI	GTAC	2 cut(s)	58, 198
DdeI	CTNAG	6 cut(s)	86, 110, 320, 356, 512, 531
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	6 cut(s)	150, 233, 423, 432, 503, 579
DpnII	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	34, 346
Eco91I	GGTNACC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	109
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
FaeI	CATG	2 cut(s)	422, 446
FaiI	YATR	4 cut(s)	174, 420, 444, 589
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	2 cut(s)	314, 353
FatI	CATG	2 cut(s)	418, 442
FauI	CCCGC	1 cut(s)	474
FbaI	TGATCA	2 cut(s)	231, 421
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	5 cut(s)	66, 83, 367, 482, 485
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	5 cut(s)	66, 83, 367, 482, 485
FspBI	CTAG	1 cut(s)	537
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	3 cut(s)	81, 310, 439
GluI	GCNGC	5 cut(s)	66, 83, 367, 482, 485
GsaI	CCCAGC	3 cut(s)	229, 520, 544
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	68, 95, 107, 417
HapII	CCGG	2 cut(s)	121, 349
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	3 cut(s)	82, 311, 440
Hin1I	GRCGYC	4 cut(s)	51, 438, 479, 491
Hin1II	CATG	2 cut(s)	422, 446
Hin6I	GCGC	3 cut(s)	80, 309, 438
HinP1I	GCGC	3 cut(s)	80, 309, 438
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	3 cut(s)	114, 126, 143
HpaII	CCGG	2 cut(s)	121, 349
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	5 cut(s)	34, 89, 136, 148, 236
Hpy188III	TCNNGA	2 cut(s)	428, 505
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	5 cut(s)	53, 140, 220, 223, 259
HpyAV	CCTTC	3 cut(s)	79, 106, 222
HpyCH4IV	ACGT	5 cut(s)	51, 257, 372, 461, 491
HpyCH4V	TGCA	3 cut(s)	184, 390, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 471
HpyF3I	CTNAG	6 cut(s)	86, 110, 320, 356, 512, 531
HpySE526I	ACGT	5 cut(s)	51, 257, 372, 461, 491
Hsp92I	GRCGYC	4 cut(s)	51, 438, 479, 491
Hsp92II	CATG	2 cut(s)	422, 446
HspAI	GCGC	3 cut(s)	80, 309, 438
KasI	GGCGCC	1 cut(s)	437
Ksp22I	TGATCA	2 cut(s)	231, 421
Kzo9I	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
LmnI	GCTCC	3 cut(s)	163, 352, 520
Lsp1109I	GCAGC	3 cut(s)	69, 353, 471
LweI	GCATC	2 cut(s)	148, 399
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	5 cut(s)	51, 257, 372, 461, 491
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	6 cut(s)	150, 233, 423, 432, 503, 579
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
MboII	GAAGA	4 cut(s)	21, 183, 198, 367
MflI	RGATCY	2 cut(s)	501, 577
MhlI	GDGCHC	2 cut(s)	109, 467
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	159, 309
MnlI	CCTC	7 cut(s)	133, 256, 259, 337, 351, 519, 568
MspA1I	CMGCKG	3 cut(s)	229, 291, 484
MspI	CCGG	2 cut(s)	121, 349
MspR9I	CCNGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	315, 471
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
NlaIII	CATG	2 cut(s)	422, 446
NlaIV	GGNNCC	2 cut(s)	107, 439
NmuCI	GTSAC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	126, 143
PflFI	GACNNNGTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	5 cut(s)	67, 84, 368, 483, 486
PleI	GAGTC	1 cut(s)	108
PluTI	GGCGCC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	3 cut(s)	225, 516, 540
PspN4I	GGNNCC	2 cut(s)	107, 439
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	5 cut(s)	34, 93, 105, 106, 346
PstI	CTGCAG	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	501, 577
PsyI	GACNNNGTC	1 cut(s)	344
PvuII	CAGCTG	2 cut(s)	229, 291
RsaI	GTAC	2 cut(s)	59, 199
RsaNI	GTAC	2 cut(s)	58, 198
SalI	GTCGAC	1 cut(s)	220
SatI	GCNGC	5 cut(s)	66, 83, 367, 482, 485
Sau3AI	GATC	6 cut(s)	148, 231, 421, 430, 501, 577
Sau96I	GGNCC	5 cut(s)	34, 93, 105, 106, 346
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	109, 467
SfaNI	GCATC	2 cut(s)	148, 399
SfcI	CTRYAG	2 cut(s)	472, 587
SfoI	GGCGCC	1 cut(s)	439
SinI	GGWCC	2 cut(s)	34, 346
SsiI	CCGC	5 cut(s)	65, 118, 161, 467, 482
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	348
TaiI	ACGT	5 cut(s)	54, 260, 375, 464, 494
TaqI	TCGA	4 cut(s)	15, 221, 261, 393
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	2 cut(s)	68, 484
TfiI	GAWTC	2 cut(s)	126, 143
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	82, 366, 484
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	34, 346
XagI	CCTNNNNNAGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	1 cut(s)	537
ZraI	GACGTC	2 cut(s)	52, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.