Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015946

Physical Location & Seq

Genomic Coordinates Reverse (-)

5189905 .. 5191765

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGTTTAGTCGTTAATTCGATCTCGTCCTCGGACTTGTTCTTCAGCGACGCGCTCTACAAGGCCGCGTTTGTAATCGCCGTCCTGAGATGGGCCTTCTACTGGGCCCTGAGGCTCCGCCGCAGACTCATGCCCGACGAGGATTCCGATCTCCTAGAGTCCGAGCTCGACTACGAACAGTCTTCCTCTAACTCTTCGTCCCATACGACGTCGTCTCAGCTGATTAGAGACAGCCTGATACGGACGACGTATGAGGAGGTGACGAGACGACAGGGGAACAGCTGTCGTCATTGGGACACCTGCGCGGTGTGTCTGACCCAGTTGGAGATGGGGGACGAGGTCCGGGAGCTGCGGAACTGCTGCCACGTCTTCCACACGGAGTGTATTGACAGGTGGCTGGACTACAACGGGCATGATCATCATGACGGCGACGCCGGCGGGCAGGAGGATAATCACAAGACGTGCCCGCTGTGCAGGACGCCGCTGCTGACGTCGTCGCAGATCCAGAGTTTGAGCTGGGAGCAAAGTTCTCAGCCGAGCTGGGCGGTGGAGAGACTGCTCTATCTATTTGGGGAGGATCTGGTTTGCGCGAAGTCTCGTAGACCCCAAACCCGCGGAGTCTGTAGAGACGAAGTTCCGGGTTCTGCAACTCCGCTCTCTCTTCTCTTCTTCTCTACTCCACCACCACCTTTACTCTTCACTCCTCTCCACCACTCCTCAGATCCATCTCCTTCCACTCCGTCCTCTCCAGATCTCACCTCACCAGCTCACCTCCTCTCACCTCTCCGCTCCACACTCCACCTCATTCACATTCTCATCGTCTTCACCAATCTCACCTCCTCAGGTGATTTTGAGAGCCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

289

Amino Acids

32.55

Weight (kDa)

5.57

Isoelectric Point (pI)

74.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	99 - 159	2e-08	Ring finger domain
zf-RING_11	PF17123	101 - 129	1.8e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43430 AT5G20885
fragaria_vesca	FvH4_1g09671
malus_domestica	MD15G1225600.v1.1
prunus_persica	Prupe.7G189400_v2.0.a1
pyrus_communis	pycom15g20050
rosa_chinensis	RchiOBHm_Chr2g0096531
rosa_multiflora	Rmu_sc0004096.1_g000010
rosa_roxburghii	Rroxscaffold_2G00145560
rosa_rugosa	Rorug02G0058300
rosa_samantha	Rh2AG105400 Rh2BG107700 Rh2CG109500 Rh2DG108500
rosa_wichuraiana	Rw2G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	308
AatII	GACGTC	2 cut(s)	212, 494
Acc36I	ACCTGC	1 cut(s)	308
AccBSI	CCGCTC	2 cut(s)	655, 789
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	5 cut(s)	53, 68, 305, 590, 615
AclWI	GGATC	3 cut(s)	496, 585, 716
AcuI	CTGAAG	1 cut(s)	28
AcyI	GRCGYC	4 cut(s)	209, 432, 479, 491
AdeI	CACNNNGTG	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	91, 102
AjiI	CACGTC	2 cut(s)	367, 462
AluBI	AGCT	7 cut(s)	166, 220, 282, 349, 516, 540, 767
AluI	AGCT	7 cut(s)	166, 220, 282, 349, 516, 540, 767
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	6 cut(s)	219, 222, 259, 547, 600, 621
AlwI	GGATC	3 cut(s)	496, 585, 716
AoxI	GGCC	3 cut(s)	63, 93, 105
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	349, 360, 484
AspLEI	GCGC	3 cut(s)	55, 305, 590
AspS9I	GGNCC	4 cut(s)	93, 105, 106, 340
AsuC2I	CCSGG	2 cut(s)	344, 639
AsuHPI	GGTGA	8 cut(s)	271, 748, 753, 761, 771, 817, 826, 857
AvaII	GGWCC	1 cut(s)	340
AxyI	CCTNAGG	2 cut(s)	110, 841
BaeGI	GKGCMC	2 cut(s)	109, 467
BanII	GRGCYC	2 cut(s)	109, 168
BbsI	GAAGAC	3 cut(s)	174, 361, 814
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	336, 347, 471
BccI	CCATC	3 cut(s)	84, 322, 733
BceAI	ACGGC	2 cut(s)	65, 442
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	344, 639
BcoDI	GTCTC	6 cut(s)	219, 222, 259, 547, 600, 621
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	622
BfuAI	ACCTGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	6 cut(s)	66, 121, 350, 361, 482, 485
BlsI	GCNGC	6 cut(s)	67, 122, 351, 362, 483, 486
Bme1390I	CCNGG	2 cut(s)	344, 639
Bme18I	GGWCC	1 cut(s)	340
BmgBI	CACGTC	2 cut(s)	367, 462
BmgT120I	GGNCC	4 cut(s)	93, 105, 106, 340
BmiI	GGNNCC	2 cut(s)	107, 116
BmrFI	CCNGG	2 cut(s)	344, 639
BmrI	ACTGGG	2 cut(s)	112, 313
BmuI	ACTGGG	2 cut(s)	112, 313
BpiI	GAAGAC	3 cut(s)	174, 361, 814
BpmI	CTGGAG	1 cut(s)	732
BpuMI	CCSGG	2 cut(s)	344, 639
BsaBI	GATNNNNATC	1 cut(s)	147
BsaHI	GRCGYC	4 cut(s)	209, 432, 479, 491
BsaJI	CCNNGG	2 cut(s)	30, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 102
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	107, 319
Bse21I	CCTNAGG	2 cut(s)	110, 841
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	30, 613
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	91, 102
BseMII	CTCAG	6 cut(s)	77, 101, 230, 545, 732, 855
BseNI	ACTGG	2 cut(s)	107, 319
BseRI	GAGGAG	5 cut(s)	269, 693, 706, 764, 829
BseSI	GKGCMC	2 cut(s)	109, 467
BseXI	GCAGC	3 cut(s)	336, 347, 471
BseYI	CCCAGC	2 cut(s)	516, 540
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	5 cut(s)	53, 68, 305, 590, 615
BshFI	GGCC	3 cut(s)	65, 95, 107
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	343, 435, 638, 859
BslFI	GGGAC	3 cut(s)	184, 308, 347
BslI	CCNNNNNNNGG	2 cut(s)	91, 102
BsmAI	GTCTC	6 cut(s)	219, 222, 259, 547, 600, 621
BsmBI	CGTCTC	3 cut(s)	219, 259, 621
BsmFI	GGGAC	3 cut(s)	184, 308, 347
BsnI	GGCC	3 cut(s)	65, 95, 107
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	3 cut(s)	109, 168, 467
Bsp143I	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
BspANI	GGCC	3 cut(s)	65, 95, 107
BspCNI	CTCAG	6 cut(s)	78, 102, 229, 544, 731, 854
BspFNI	CGCG	5 cut(s)	53, 68, 305, 590, 615
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	107, 116
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	3 cut(s)	496, 585, 716
BsrBI	CCGCTC	2 cut(s)	655, 789
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	107, 319
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	30, 613
BssMI	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
BssNI	GRCGYC	4 cut(s)	209, 432, 479, 491
Bst4CI	ACNGT	1 cut(s)	180
Bst6I	CTCTTC	4 cut(s)	199, 666, 671, 701
BstACI	GRCGYC	4 cut(s)	209, 432, 479, 491
BstC8I	GCNNGC	3 cut(s)	436, 440, 467
BstDEI	CTNAG	6 cut(s)	86, 110, 216, 531, 718, 841
BstDSI	CCRYGG	1 cut(s)	613
BstFNI	CGCG	5 cut(s)	53, 68, 305, 590, 615
BstHHI	GCGC	3 cut(s)	55, 305, 590
BstKTI	GATC	7 cut(s)	24, 151, 418, 504, 580, 724, 754
BstMAI	GTCTC	6 cut(s)	219, 222, 259, 547, 600, 621
BstMBI	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 471
BstSCI	CCNGG	2 cut(s)	342, 637
BstSFI	CTRYAG	1 cut(s)	622
BstSLI	GKGCMC	2 cut(s)	109, 467
BstUI	CGCG	5 cut(s)	53, 68, 305, 590, 615
BstV1I	GCAGC	3 cut(s)	336, 347, 471
BstV2I	GAAGAC	3 cut(s)	174, 361, 814
BstX2I	RGATCY	4 cut(s)	501, 577, 721, 751
BstYI	RGATCY	4 cut(s)	501, 577, 721, 751
Bsu36I	CCTNAGG	2 cut(s)	110, 841
BsuRI	GGCC	3 cut(s)	65, 95, 107
BtgI	CCRYGG	1 cut(s)	613
BtrI	CACGTC	2 cut(s)	367, 462
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	436, 440, 467
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	3 cut(s)	55, 305, 590
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	4 cut(s)	93, 105, 106, 340
Cfr42I	CCGCGG	1 cut(s)	616
CseI	GACGC	3 cut(s)	59, 440, 487
CviAII	CATG	3 cut(s)	130, 413, 422
DdeI	CTNAG	6 cut(s)	86, 110, 216, 531, 718, 841
DpnI	GATC	7 cut(s)	23, 150, 417, 503, 579, 723, 753
DpnII	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
DraIII	CACNNNGTG	1 cut(s)	381
Eam1104I	CTCTTC	4 cut(s)	199, 666, 671, 701
EarI	CTCTTC	4 cut(s)	199, 666, 671, 701
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	109, 168
Eco47I	GGWCC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	28
Eco81I	CCTNAGG	2 cut(s)	110, 841
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	2 cut(s)	109, 168
Esp3I	CGTCTC	3 cut(s)	219, 259, 621
FaeI	CATG	3 cut(s)	133, 416, 425
FaiI	YATR	5 cut(s)	131, 204, 252, 414, 423
FaqI	GGGAC	3 cut(s)	184, 308, 347
FatI	CATG	3 cut(s)	129, 412, 421
FauI	CCCGC	3 cut(s)	431, 474, 620
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	6 cut(s)	66, 121, 350, 361, 482, 485
FriOI	GRGCYC	2 cut(s)	109, 168
Fsp4HI	GCNGC	6 cut(s)	66, 121, 350, 361, 482, 485
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	3 cut(s)	54, 304, 589
GluI	GCNGC	6 cut(s)	66, 121, 350, 361, 482, 485
GsaI	CCCAGC	2 cut(s)	520, 544
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	3 cut(s)	65, 95, 107
HapII	CCGG	4 cut(s)	343, 435, 638, 859
HgaI	GACGC	3 cut(s)	59, 440, 487
HhaI	GCGC	3 cut(s)	55, 305, 590
Hin1I	GRCGYC	4 cut(s)	209, 432, 479, 491
Hin1II	CATG	3 cut(s)	133, 416, 425
Hin6I	GCGC	3 cut(s)	53, 303, 588
HinP1I	GCGC	3 cut(s)	53, 303, 588
HinfI	GANTC	4 cut(s)	126, 143, 158, 618
HpaII	CCGG	4 cut(s)	343, 435, 638, 859
HphI	GGTGA	8 cut(s)	271, 748, 753, 761, 771, 817, 826, 857
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	5 cut(s)	34, 148, 163, 315, 721
Hpy188III	TCNNGA	4 cut(s)	85, 422, 505, 749
Hpy8I	GTNNAC	1 cut(s)	602
Hpy99I	CGWCG	8 cut(s)	53, 140, 211, 214, 250, 434, 496, 499
HpyAV	CCTTC	2 cut(s)	106, 741
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	5 cut(s)	209, 248, 366, 461, 491
HpyCH4V	TGCA	2 cut(s)	474, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 471
HpyF3I	CTNAG	6 cut(s)	86, 110, 216, 531, 718, 841
HpySE526I	ACGT	5 cut(s)	209, 248, 366, 461, 491
Hsp92I	GRCGYC	4 cut(s)	209, 432, 479, 491
Hsp92II	CATG	3 cut(s)	133, 416, 425
HspAI	GCGC	3 cut(s)	53, 303, 588
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	415
KspI	CCGCGG	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
LmnI	GCTCC	4 cut(s)	120, 346, 520, 794
Lsp1109I	GCAGC	3 cut(s)	336, 347, 471
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	5 cut(s)	209, 248, 366, 461, 491
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	7 cut(s)	23, 150, 417, 503, 579, 723, 753
MbiI	CCGCTC	2 cut(s)	655, 789
MboI	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
MboII	GAAGA	9 cut(s)	34, 174, 186, 361, 653, 658, 661, 688, 814
MflI	RGATCY	4 cut(s)	501, 577, 721, 751
MhlI	GDGCHC	3 cut(s)	109, 168, 467
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	3 cut(s)	120, 167, 627
MmeI	TCCRAC	1 cut(s)	303
MreI	CGCCGGCG	1 cut(s)	434
MroNI	GCCGGC	1 cut(s)	434
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	5 cut(s)	220, 282, 469, 484, 615
MspI	CCGG	4 cut(s)	343, 435, 638, 859
MspR9I	CCNGG	2 cut(s)	344, 639
MvnI	CGCG	5 cut(s)	53, 68, 305, 590, 615
MwoI	GCNNNNNNNGC	2 cut(s)	435, 471
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	2 cut(s)	344, 639
NdeII	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	3 cut(s)	133, 416, 425
NlaIV	GGNNCC	2 cut(s)	107, 116
NmeAIII	GCCGAG	1 cut(s)	561
NmuCI	GTSAC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 203
PdiI	GCCGGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	3 cut(s)	211, 338, 493
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	6 cut(s)	67, 122, 351, 362, 483, 486
PleI	GAGTC	3 cut(s)	120, 166, 626
PpsI	GAGTC	3 cut(s)	120, 166, 626
Psp124BI	GAGCTC	1 cut(s)	168
PspFI	CCCAGC	2 cut(s)	516, 540
PspN4I	GGNNCC	2 cut(s)	107, 116
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	4 cut(s)	93, 105, 106, 340
PsuI	RGATCY	4 cut(s)	501, 577, 721, 751
PsyI	GACNNNGTC	3 cut(s)	211, 338, 493
PvuII	CAGCTG	2 cut(s)	220, 282
SacI	GAGCTC	1 cut(s)	168
SacII	CCGCGG	1 cut(s)	616
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	6 cut(s)	66, 121, 350, 361, 482, 485
Sau3AI	GATC	7 cut(s)	21, 148, 415, 501, 577, 721, 751
Sau96I	GGNCC	4 cut(s)	93, 105, 106, 340
SchI	GAGTC	3 cut(s)	120, 167, 627
ScrFI	CCNGG	2 cut(s)	344, 639
SduI	GDGCHC	3 cut(s)	109, 168, 467
SfcI	CTRYAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	616
SgrAI	CRCCGGYG	1 cut(s)	434
SgrBI	CCGCGG	1 cut(s)	616
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	342, 637
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	5 cut(s)	212, 251, 369, 464, 494
TaqI	TCGA	2 cut(s)	20, 168
TasI	AATT	1 cut(s)	16
TauI	GCSGC	3 cut(s)	68, 123, 484
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	349, 360, 484
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	3 cut(s)	256, 392, 729
Tth111I	GACNNNGTC	3 cut(s)	211, 338, 493
VpaK11BI	GGWCC	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	155
ZraI	GACGTC	2 cut(s)	210, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.