Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015946

Physical Location & Seq

Genomic Coordinates Forward (+)

18162425 .. 18163850

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G189400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTCTGCTCATTGCTTGCATATGCTCCAATGGGTTTGTTTGAAGAAGACTCGTCCTCATCAGGCTTGATCGTGAGCCATGTTTTATACAAAGCAGCTTTTGTAATTGCCTTAATGAGATGGGTTTTGTACTGGGCTCTCAGACTCAGACAAAGACTCTTATCTTCTTCTTCCTCCTCCTCCTCCTTTGTTTCTGACCATGGCTACAATTTCCTGGAGGTAGAGCATGGTGAATTACAAAACTACCCTCCTGTGCCTTCCTCTTGCGCTTCTTCTTCAACCCAGTTGATCAGAGACTGCCTTGTGCAGACCACCTTTGAAGAAATTACCAACAGACAAGGAAGCTACAGAGCCAGCAGCAGTGGCTGTGACACGTGTGCTGTGTGCTTGAGCCAGCTGGAGATGGAGGATCAGGTGAGGGAGCTCAGGAACTGCAGCCACGTGTTCCACACAGAATGCATCGACAGATGGCTAGAGTATCATGATCATCATCATGATGATAACCACAGGACTTGCCCACTCTGTAGGACCCCCTTGCTGACGTCATCCCAAATCCAGAGCTTGAGCTGGGATCACAGATCCTCCCAGCCCAGCTGGGCTGTGGAGAGACTGCTCTACCTCTTTGGGGATGACCTGCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

215

Amino Acids

24.4

Weight (kDa)

5.46

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43430 AT5G20885
fragaria_vesca	FvH4_1g09671
malus_domestica	MD15G1225600.v1.1
prunus_persica	Prupe.7G189400_v2.0.a1
pyrus_communis	pycom15g20050
rosa_chinensis	RchiOBHm_Chr2g0096531
rosa_multiflora	Rmu_sc0004096.1_g000010
rosa_roxburghii	Rroxscaffold_2G00145560
rosa_rugosa	Rorug02G0058300
rosa_samantha	Rh2AG105400 Rh2BG107700 Rh2CG109500 Rh2DG108500
rosa_wichuraiana	Rw2G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	545
AclWI	GGATC	3 cut(s)	417, 573, 579
AcvI	CACGTG	2 cut(s)	375, 442
AcyI	GRCGYC	1 cut(s)	542
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	625
AflIII	ACRYGT	3 cut(s)	372, 374, 441
AgsI	TTSAA	3 cut(s)	44, 279, 320
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	7 cut(s)	98, 345, 397, 424, 561, 567, 594
AluI	AGCT	7 cut(s)	98, 345, 397, 424, 561, 567, 594
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	288, 601
AlwI	GGATC	3 cut(s)	417, 573, 579
AlwNI	CAGNNNCTG	3 cut(s)	297, 366, 432
ApeKI	GCWGC	3 cut(s)	95, 357, 435
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	242, 427
AvaII	GGWCC	1 cut(s)	528
BanII	GRGCYC	2 cut(s)	139, 426
BbrPI	CACGTG	2 cut(s)	375, 442
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	107, 369, 447
BccI	CCATC	3 cut(s)	114, 397, 462
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	2 cut(s)	288, 484
BcoDI	GTCTC	2 cut(s)	288, 601
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	3 cut(s)	346, 433, 523
BisI	GCNGC	3 cut(s)	96, 358, 436
BlsI	GCNGC	3 cut(s)	97, 359, 437
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	215
BmrI	ACTGGG	2 cut(s)	142, 277
BmsI	GCATC	1 cut(s)	468
BmuI	ACTGGG	2 cut(s)	142, 277
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	2 cut(s)	236, 419
Bpu10I	CCTNAGC	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	409, 583
BsaAI	YACGTR	2 cut(s)	375, 442
BsaBI	GATNNNNATC	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse1I	ACTGG	2 cut(s)	137, 283
Bse3DI	GCAATG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	545, 634
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	3 cut(s)	154, 160, 439
BseNI	ACTGG	2 cut(s)	137, 283
BseRI	GAGGAG	3 cut(s)	166, 169, 172
BseXI	GCAGC	3 cut(s)	107, 369, 447
BseYI	CCCAGC	4 cut(s)	567, 585, 590, 594
BsgI	GTGCAG	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	288, 601
BsmI	GAATGC	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	139, 426
Bsp143I	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
Bsp19I	CCATGG	1 cut(s)	199
BspCNI	CTCAG	3 cut(s)	153, 159, 438
BspHI	TCATGA	2 cut(s)	481, 493
BspLI	GGNNCC	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	437
BspPI	GGATC	3 cut(s)	417, 573, 579
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	137, 283
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
BssNI	GRCGYC	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	542
BstBAI	YACGTR	2 cut(s)	375, 442
BstC8I	GCNNGC	3 cut(s)	18, 355, 395
BstDEI	CTNAG	3 cut(s)	140, 146, 425
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	545, 634
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	6 cut(s)	72, 291, 412, 487, 574, 581
BstMAI	GTCTC	2 cut(s)	288, 601
BstMBI	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	3 cut(s)	346, 433, 523
BstV1I	GCAGC	3 cut(s)	107, 369, 447
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	545, 634
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	3 cut(s)	18, 355, 395
CaiI	CAGNNNCTG	3 cut(s)	297, 366, 432
CciI	TCATGA	2 cut(s)	481, 493
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	494, 529
CviAII	CATG	5 cut(s)	80, 200, 227, 482, 494
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	3 cut(s)	140, 146, 425
DpnI	GATC	6 cut(s)	71, 290, 411, 486, 573, 580
DpnII	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	199
Eco24I	GRGCYC	2 cut(s)	139, 426
Eco47I	GGWCC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	424
Eco72I	CACGTG	2 cut(s)	375, 442
EcoICRI	GAGCTC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	139, 426
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	5 cut(s)	83, 203, 230, 485, 497
FaiI	YATR	8 cut(s)	22, 24, 81, 88, 201, 228, 483, 495
FatI	CATG	5 cut(s)	79, 199, 226, 481, 493
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	2 cut(s)	288, 484
Fnu4HI	GCNGC	3 cut(s)	96, 358, 436
FokI	GGATG	2 cut(s)	532, 641
FriOI	GRGCYC	2 cut(s)	139, 426
Fsp4HI	GCNGC	3 cut(s)	96, 358, 436
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	96, 358, 436
GsaI	CCCAGC	4 cut(s)	571, 589, 594, 598
GsuI	CTGGAG	2 cut(s)	236, 419
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	83, 203, 230, 485, 497
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	3 cut(s)	50, 144, 156
HphI	GGTGA	2 cut(s)	242, 427
Hpy188I	TCNGA	4 cut(s)	143, 149, 196, 293
Hpy188III	TCNNGA	5 cut(s)	73, 427, 482, 494, 556
HpyAV	CCTTC	1 cut(s)	267
HpyCH4IV	ACGT	3 cut(s)	374, 441, 542
HpyCH4V	TGCA	4 cut(s)	20, 307, 435, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpyF3I	CTNAG	3 cut(s)	140, 146, 425
HpySE526I	ACGT	3 cut(s)	374, 441, 542
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	83, 203, 230, 485, 497
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	2 cut(s)	288, 484
Kzo9I	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
LmnI	GCTCC	2 cut(s)	31, 421
Lsp1109I	GCAGC	3 cut(s)	107, 369, 447
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	3 cut(s)	374, 441, 542
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	6 cut(s)	71, 290, 411, 486, 573, 580
MboI	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
MboII	GAAGA	8 cut(s)	56, 59, 156, 159, 162, 264, 267, 332
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	139, 426
MluCI	AATT	4 cut(s)	105, 208, 233, 324
MlyI	GAGTC	3 cut(s)	44, 138, 150
Mph1103I	ATGCAT	1 cut(s)	461
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	2 cut(s)	492, 495
MspA1I	CMGCKG	2 cut(s)	397, 594
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
NlaIII	CATG	5 cut(s)	83, 203, 230, 485, 497
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	461
PagI	TCATGA	2 cut(s)	481, 493
PctI	GAATGC	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	97, 359, 437
PleI	GAGTC	3 cut(s)	44, 138, 150
PmaCI	CACGTG	2 cut(s)	375, 442
PmlI	CACGTG	2 cut(s)	375, 442
PpsI	GAGTC	3 cut(s)	44, 138, 150
Ppu21I	YACGTR	2 cut(s)	375, 442
PpuMI	RGGWCCY	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	213
PspCI	CACGTG	2 cut(s)	375, 442
PspFI	CCCAGC	4 cut(s)	567, 585, 590, 594
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	530
PspPI	GGNCC	1 cut(s)	528
PspPPI	RGGWCCY	1 cut(s)	528
PstI	CTGCAG	1 cut(s)	437
PstNI	CAGNNNCTG	3 cut(s)	297, 366, 432
PsuI	RGATCY	1 cut(s)	578
PvuII	CAGCTG	2 cut(s)	397, 594
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	2 cut(s)	492, 495
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	96, 358, 436
Sau3AI	GATC	6 cut(s)	69, 288, 409, 484, 571, 578
Sau96I	GGNCC	1 cut(s)	528
SchI	GAGTC	3 cut(s)	44, 138, 150
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	139, 426
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	3 cut(s)	346, 433, 523
SinI	GGWCC	1 cut(s)	528
SmiMI	CAYNNNNRTG	2 cut(s)	492, 495
SmlI	CTYRAG	2 cut(s)	388, 562
SmoI	CTYRAG	2 cut(s)	388, 562
Sse9I	AATT	4 cut(s)	105, 208, 233, 324
SspMI	CTAG	1 cut(s)	473
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	199
TaiI	ACGT	3 cut(s)	377, 444, 545
TaqI	TCGA	1 cut(s)	462
TasI	AATT	4 cut(s)	105, 208, 233, 324
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	3 cut(s)	95, 357, 435
Tsp45I	GTSAC	1 cut(s)	368
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XspI	CTAG	1 cut(s)	473
ZraI	GACGTC	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.