Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004096.1

Orthogroup ID

OG0015946

Physical Location & Seq

Genomic Coordinates Forward (+)

38684 .. 39277

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004096.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgggtttagttgtcgatacattctcgtcctcggacctgttagtcagcgacgtcctctacaaggcggccttcgtaatcgcgctgctcagatgggccttctactgggccctgagactccgccggagaatcttgtccgacgaggattccgatccgttggatgcggagcttgactatgaagtagtacagccctcctcttcctgtacgacgtcttctcctttgtcgtccacccagctgatcagagacagtctgatacggacgacgttccaggaggtgaccagacgacagggaaacagctgtcgttgggacacctgcgccgtctgcctgagccagctggagatgggggacgaggtccgggagctgaggaactgctgccacgtcttccacaccgagtgcatcgacaggtggctggactacaacggccatgatcatcacgatcacgccgcccatgacgacaaccacaagacgtgccccctctgcaggacgcctctgctgacgtcatcgcagatccagagcctgagctgggagcagacgtctcagccgagctgggctgtggagagactgctctatctttttggggaggatctggtgctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_11 zf-RING_2

Protein Analysis

197

Amino Acids

22.65

Weight (kDa)

4.95

Isoelectric Point (pI)

65.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43430 AT5G20885
fragaria_vesca	FvH4_1g09671
malus_domestica	MD15G1225600.v1.1
prunus_persica	Prupe.7G189400_v2.0.a1
pyrus_communis	pycom15g20050
rosa_chinensis	RchiOBHm_Chr2g0096531
rosa_multiflora	Rmu_sc0004096.1_g000010
rosa_roxburghii	Rroxscaffold_2G00145560
rosa_rugosa	Rorug02G0058300
rosa_samantha	Rh2AG105400 Rh2BG107700 Rh2CG109500 Rh2DG108500
rosa_wichuraiana	Rw2G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
AasI	GACNNNNNNGTC	1 cut(s)	41
AatII	GACGTC	4 cut(s)	54, 209, 497, 533
Acc36I	ACCTGC	1 cut(s)	317
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	65, 118, 161, 441
AclWI	GGATC	3 cut(s)	143, 499, 588
AcoI	YGGCCR	1 cut(s)	418
AcyI	GRCGYC	5 cut(s)	51, 206, 482, 494, 530
AdeI	CACNNNGTG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	183, 202
AfiI	CCNNNNNNNGG	4 cut(s)	61, 102, 477, 520
AjiI	CACGTC	2 cut(s)	376, 465
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	7 cut(s)	166, 232, 294, 331, 358, 519, 543
AluI	AGCT	7 cut(s)	166, 232, 294, 331, 358, 519, 543
Alw26I	GTCTC	4 cut(s)	106, 234, 537, 550
AlwI	GGATC	3 cut(s)	143, 499, 588
AlwNI	CAGNNNCTG	1 cut(s)	514
AoxI	GGCC	4 cut(s)	66, 93, 105, 418
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	82, 369
AspLEI	GCGC	2 cut(s)	82, 314
AspS9I	GGNCC	5 cut(s)	34, 93, 105, 106, 349
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	34, 349
BaeGI	GKGCMC	2 cut(s)	109, 470
BanII	GRGCYC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	193, 225
BbsI	GAAGAC	2 cut(s)	201, 370
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	69, 356
BccI	CCATC	2 cut(s)	84, 331
BceAI	ACGGC	2 cut(s)	299, 433
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	2 cut(s)	234, 424
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	4 cut(s)	106, 234, 537, 550
BfmI	CTRYAG	2 cut(s)	475, 590
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	4 cut(s)	66, 83, 370, 441
BlsI	GCNGC	4 cut(s)	67, 84, 371, 442
Bme1390I	CCNGG	2 cut(s)	266, 353
Bme18I	GGWCC	2 cut(s)	34, 349
BmgBI	CACGTC	2 cut(s)	376, 465
BmgT120I	GGNCC	5 cut(s)	34, 93, 105, 106, 349
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	2 cut(s)	266, 353
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	148, 402
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	201, 370
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	3 cut(s)	323, 359, 515
BpuMI	CCSGG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	147
BsaHI	GRCGYC	5 cut(s)	51, 206, 482, 494, 530
BsaJI	CCNNGG	1 cut(s)	30
BsaXI	ACNNNNNCTCC	4 cut(s)	196, 226, 515, 545
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 102, 477, 520
Bse1I	ACTGG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	4 cut(s)	61, 102, 477, 520
BseMII	CTCAG	6 cut(s)	100, 101, 314, 350, 506, 548
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	181
BseSI	GKGCMC	2 cut(s)	109, 470
BseXI	GCAGC	2 cut(s)	69, 356
BseYI	CCCAGC	3 cut(s)	228, 519, 543
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	4 cut(s)	68, 95, 107, 420
BsiSI	CCGG	2 cut(s)	121, 352
BslFI	GGGAC	2 cut(s)	317, 356
BslI	CCNNNNNNNGG	4 cut(s)	61, 102, 477, 520
BsmAI	GTCTC	4 cut(s)	106, 234, 537, 550
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	2 cut(s)	317, 356
BsnI	GGCC	4 cut(s)	68, 95, 107, 420
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	109, 470
Bsp143I	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
BspACI	CCGC	4 cut(s)	65, 118, 161, 441
BspANI	GGCC	4 cut(s)	68, 95, 107, 420
BspCNI	CTCAG	6 cut(s)	99, 102, 315, 351, 507, 547
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	479
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	143, 499, 588
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
BssNI	GRCGYC	5 cut(s)	51, 206, 482, 494, 530
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	5 cut(s)	51, 206, 482, 494, 530
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	6 cut(s)	86, 110, 323, 359, 515, 534
BstEII	GGTNACC	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	82, 314
BstKTI	GATC	6 cut(s)	151, 237, 427, 436, 507, 583
BstMAI	GTCTC	4 cut(s)	106, 234, 537, 550
BstMBI	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 474
BstNI	CCWGG	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	264, 351
BstSFI	CTRYAG	2 cut(s)	475, 590
BstSLI	GKGCMC	2 cut(s)	109, 470
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	69, 356
BstV2I	GAAGAC	2 cut(s)	201, 370
BstX2I	RGATCY	2 cut(s)	504, 580
BstYI	RGATCY	2 cut(s)	504, 580
BsuRI	GGCC	4 cut(s)	68, 95, 107, 420
BtgZI	GCGATG	1 cut(s)	483
BtrI	CACGTC	2 cut(s)	376, 465
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	1 cut(s)	514
CfoI	GCGC	2 cut(s)	82, 314
Cfr13I	GGNCC	5 cut(s)	34, 93, 105, 106, 349
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	182, 201
CviAII	CATG	2 cut(s)	422, 446
CviQI	GTAC	2 cut(s)	182, 201
DdeI	CTNAG	6 cut(s)	86, 110, 323, 359, 515, 534
DpnI	GATC	6 cut(s)	150, 236, 426, 435, 506, 582
DpnII	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
DraIII	CACNNNGTG	1 cut(s)	390
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	34, 349
Eco91I	GGTNACC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	2 cut(s)	425, 449
FaiI	YATR	4 cut(s)	174, 423, 447, 592
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	2 cut(s)	317, 356
FatI	CATG	2 cut(s)	421, 445
FbaI	TGATCA	2 cut(s)	234, 424
Fnu4HI	GCNGC	4 cut(s)	66, 83, 370, 441
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	4 cut(s)	66, 83, 370, 441
GlaI	GCGC	2 cut(s)	81, 313
GluI	GCNGC	4 cut(s)	66, 83, 370, 441
GsaI	CCCAGC	3 cut(s)	232, 523, 547
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	68, 95, 107, 420
HapII	CCGG	2 cut(s)	121, 352
HgaI	GACGC	1 cut(s)	490
HhaI	GCGC	2 cut(s)	82, 314
Hin1I	GRCGYC	5 cut(s)	51, 206, 482, 494, 530
Hin1II	CATG	2 cut(s)	425, 449
Hin6I	GCGC	2 cut(s)	80, 312
HinP1I	GCGC	2 cut(s)	80, 312
HinfI	GANTC	3 cut(s)	114, 126, 143
HpaII	CCGG	2 cut(s)	121, 352
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	6 cut(s)	34, 89, 136, 148, 239, 249
Hpy188III	TCNNGA	2 cut(s)	431, 508
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	4 cut(s)	53, 140, 208, 262
HpyAV	CCTTC	2 cut(s)	79, 106
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	7 cut(s)	51, 206, 260, 375, 464, 494, 530
HpyCH4V	TGCA	2 cut(s)	393, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 474
HpyF3I	CTNAG	6 cut(s)	86, 110, 323, 359, 515, 534
HpySE526I	ACGT	7 cut(s)	51, 206, 260, 375, 464, 494, 530
Hsp92I	GRCGYC	5 cut(s)	51, 206, 482, 494, 530
Hsp92II	CATG	2 cut(s)	425, 449
HspAI	GCGC	2 cut(s)	80, 312
Ksp22I	TGATCA	2 cut(s)	234, 424
Kzo9I	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
LmnI	GCTCC	3 cut(s)	163, 355, 523
Lsp1109I	GCAGC	2 cut(s)	69, 356
LweI	GCATC	2 cut(s)	148, 402
MaeII	ACGT	7 cut(s)	51, 206, 260, 375, 464, 494, 530
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	6 cut(s)	150, 236, 426, 435, 506, 582
MboI	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
MboII	GAAGA	3 cut(s)	186, 201, 370
MflI	RGATCY	2 cut(s)	504, 580
MhlI	GDGCHC	2 cut(s)	109, 470
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	2 cut(s)	135, 159
MspA1I	CMGCKG	3 cut(s)	232, 294, 331
MspI	CCGG	2 cut(s)	121, 352
MspR9I	CCNGG	2 cut(s)	266, 353
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	318, 474
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
NlaIII	CATG	2 cut(s)	425, 449
NlaIV	GGNNCC	1 cut(s)	107
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 536
PfeI	GAWTC	2 cut(s)	126, 143
PflFI	GACNNNGTC	1 cut(s)	347
PfoI	TCCNGGA	2 cut(s)	264, 351
PkrI	GCNGC	4 cut(s)	67, 84, 371, 442
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	3 cut(s)	228, 519, 543
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	107
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	5 cut(s)	34, 93, 105, 106, 349
PstI	CTGCAG	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	514
PsuI	RGATCY	2 cut(s)	504, 580
PsyI	GACNNNGTC	1 cut(s)	347
PvuII	CAGCTG	3 cut(s)	232, 294, 331
RsaI	GTAC	2 cut(s)	183, 202
RsaNI	GTAC	2 cut(s)	182, 201
SatI	GCNGC	4 cut(s)	66, 83, 370, 441
Sau3AI	GATC	6 cut(s)	148, 234, 424, 433, 504, 580
Sau96I	GGNCC	5 cut(s)	34, 93, 105, 106, 349
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	266, 353
SduI	GDGCHC	2 cut(s)	109, 470
SfaNI	GCATC	2 cut(s)	148, 402
SfcI	CTRYAG	2 cut(s)	475, 590
SinI	GGWCC	2 cut(s)	34, 349
SsiI	CCGC	4 cut(s)	65, 118, 161, 441
StyD4I	CCNGG	2 cut(s)	264, 351
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	7 cut(s)	54, 209, 263, 378, 467, 497, 533
TaqI	TCGA	2 cut(s)	15, 396
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	2 cut(s)	68, 443
TfiI	GAWTC	2 cut(s)	126, 143
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	82, 369
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	2 cut(s)	141, 268
Tth111I	GACNNNGTC	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	34, 349
XagI	CCTNNNNNAGG	1 cut(s)	59
ZraI	GACGTC	4 cut(s)	52, 207, 495, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.