AT3G44620

low molecular weight

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015172
Physical Location & Seq
Forward (+)
16193674 .. 16195833
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44620.1

Sequence Viewer

Length: 720 bp
ATGATGATGTACTGTCCCAACCTCACGGCTTCTCTAACAATCCCTTCATATTTACCATTTTGCCACTACACTAGACAATTTCGTCCTTCTCATTTCCGATCATCTGATAAAAACCCGAATCTCGTTTCTATCATCCGAGCAAAACCCAGAATTTCTCATTCGCTTAGGTGCTTTGTATCATCTTCAATGGCGACTCCTCCTCCGACGCAGAGCAGCGAAACCAAACCTTACTCTGTTCTTTTTGTCTGTCTCGGAAACATTTGTCGCAGCCCAGCGGCTGAAGGTGTCTTTAGAGATATCGTGAAGAAGAGAGGTCTCGATTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAGGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAGGTTAAGCTAATGTGTTCTTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCATATTATGGTGGAGCCCAAGGTTTTGAGAAGGTACTGGACTTGCTTGAAGATGCTTGTGAGTCTTTGCTGGATAGTATCACTGCGCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMWPc

Protein Analysis

239

Amino Acids

26.95

Weight (kDa)

8.95

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMWPc PF01451 79 - 232 5.5e-42 Low molecular weight phosphotyrosine protein phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44620 AT3G44620
fragaria_vesca FvH4_3g24360 FvH4_3g24360 FvH4_3g24360
malus_domestica MD11G1159700.v1.1
prunus_persica Prupe.6G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043851
rosa_laevigata RLG00000034219
rosa_multiflora Rmu_sc0010851.1_g000001
rosa_roxburghii Rroxscaffold_1G00037200
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292800 Rh5CG328500 Rh5DG309800
rosa_wichuraiana Rw5G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AasI GACNNNNNNGTC 1 cut(s) 81
Acc16I TGCGCA 1 cut(s) 711
AccB7I CCANNNNNTGG 1 cut(s) 632
AccII CGCG 1 cut(s) 411
AciI CCGC 5 cut(s) 275, 342, 377, 411, 551
AclWI GGATC 3 cut(s) 374, 387, 617
AcsI RAATTY 4 cut(s) 150, 326, 464, 544
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 2 cut(s) 11, 660
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 4 cut(s) 186, 331, 514, 674
AluBI AGCT 1 cut(s) 577
AluI AGCT 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 254, 320
AlwI GGATC 3 cut(s) 374, 387, 617
AlwNI CAGNNNCTG 1 cut(s) 278
ApeKI GCWGC 3 cut(s) 213, 267, 398
ApoI RAATTY 4 cut(s) 150, 326, 464, 544
AspLEI GCGC 1 cut(s) 712
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 643
BauI CACGAG 1 cut(s) 362
BbvI GCAGC 3 cut(s) 225, 279, 385
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 254, 320
BfaI CTAG 1 cut(s) 72
BisI GCNGC 4 cut(s) 214, 268, 276, 399
BlsI GCNGC 4 cut(s) 215, 269, 277, 400
BmiI GGNNCC 2 cut(s) 381, 640
BmsI GCATC 3 cut(s) 458, 547, 667
Bpu10I CCTNAGC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 643
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse1I ACTGG 1 cut(s) 666
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 2 cut(s) 132, 493
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 186, 189
BseXI GCAGC 3 cut(s) 225, 279, 385
BseYI CCCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 2 cut(s) 254, 320
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 5 cut(s) 98, 379, 441, 469, 622
BspACI CCGC 5 cut(s) 275, 342, 377, 411, 551
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 2 cut(s) 381, 640
BspPI GGATC 3 cut(s) 374, 387, 617
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 5 cut(s) 98, 379, 441, 469, 622
BssSI CACGAG 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 132, 493
BstFNI CGCG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 5 cut(s) 101, 382, 444, 472, 625
BstMAI GTCTC 2 cut(s) 254, 320
BstMBI GATC 5 cut(s) 98, 379, 441, 469, 622
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 3 cut(s) 225, 279, 385
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BtsCI GGATG 2 cut(s) 132, 493
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 1 cut(s) 705
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 1 cut(s) 712
CseI GACGC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 10, 659
CviJI RGCY 7 cut(s) 29, 270, 278, 518, 536, 577, 641
CviKI_1 RGCY 7 cut(s) 29, 270, 278, 518, 536, 577, 641
CviQI GTAC 2 cut(s) 10, 659
DdeI CTNAG 1 cut(s) 164
DpnI GATC 5 cut(s) 100, 381, 443, 471, 624
DpnII GATC 5 cut(s) 98, 379, 441, 469, 622
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 643
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaiI YATR 6 cut(s) 49, 374, 509, 522, 628, 633
FauI CCCGC 2 cut(s) 404, 558
Fnu4HI GCNGC 4 cut(s) 214, 268, 276, 399
FokI GGATG 2 cut(s) 119, 500
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 4 cut(s) 214, 268, 276, 399
FspBI CTAG 1 cut(s) 72
FspI TGCGCA 1 cut(s) 711
GlaI GCGC 1 cut(s) 711
GluI GCNGC 4 cut(s) 214, 268, 276, 399
GsaI CCCAGC 1 cut(s) 275
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 712
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HinfI GANTC 5 cut(s) 118, 193, 320, 338, 686
Hpy188I TCNGA 7 cut(s) 98, 106, 137, 204, 254, 454, 461
Hpy188III TCNNGA 5 cut(s) 301, 317, 362, 435, 620
Hpy99I CGWCG 2 cut(s) 208, 411
HpyAV CCTTC 6 cut(s) 54, 96, 275, 508, 562, 649
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 3 cut(s) 482, 560, 594
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 406
HspAI GCGC 1 cut(s) 710
Kzo9I GATC 5 cut(s) 98, 379, 441, 469, 622
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 9 cut(s) 160, 285, 330, 448, 506, 550, 633, 647, 680
Lsp1109I GCAGC 3 cut(s) 225, 279, 385
LweI GCATC 3 cut(s) 458, 547, 667
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 406
MalI GATC 5 cut(s) 100, 381, 443, 471, 624
MboI GATC 5 cut(s) 98, 379, 441, 469, 622
MboII GAAGA 4 cut(s) 174, 316, 319, 686
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 6 cut(s) 77, 150, 326, 351, 464, 544
MlyI GAGTC 2 cut(s) 187, 695
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 7 cut(s) 32, 207, 210, 305, 358, 496, 533
MseI TTAA 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 275, 344
MunI CAATTG 1 cut(s) 351
MvnI CGCG 1 cut(s) 411
NdeII GATC 5 cut(s) 98, 379, 441, 469, 622
NlaIV GGNNCC 2 cut(s) 381, 640
NsbI TGCGCA 1 cut(s) 711
PfeI GAWTC 3 cut(s) 118, 320, 338
PflMI CCANNNNNTGG 1 cut(s) 632
PkrI GCNGC 4 cut(s) 215, 269, 277, 400
PleI GAGTC 2 cut(s) 187, 694
PpsI GAGTC 2 cut(s) 187, 694
PsiI TTATAA 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 381, 640
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 2 cut(s) 11, 660
RsaNI GTAC 2 cut(s) 10, 659
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 4 cut(s) 214, 268, 276, 399
Sau3AI GATC 5 cut(s) 98, 379, 441, 469, 622
SchI GAGTC 2 cut(s) 187, 695
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 3 cut(s) 458, 547, 667
Sse9I AATT 6 cut(s) 77, 150, 326, 351, 464, 544
SsiI CCGC 5 cut(s) 275, 342, 377, 411, 551
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 318
TaqII GACCGA 1 cut(s) 454
TasI AATT 6 cut(s) 77, 150, 326, 351, 464, 544
TatI WGTACW 1 cut(s) 9
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 3 cut(s) 118, 320, 338
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 712
TseI GCWGC 3 cut(s) 213, 267, 398
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 632
XapI RAATTY 4 cut(s) 150, 326, 464, 544
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.