Prupe.6G122700_v2.0.a1

low molecular weight

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015172
Physical Location & Seq
Reverse (-)
9138734 .. 9141087
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G122700.1

Sequence Viewer

Length: 744 bp
ATGAGGGTATTGCACAGTACAGTAGCAACCCCTTCAAATTTACGATTTTGCCACTCCTCCAACCGCCCCTCTCTAAAAACCCCATTTCTTCTTCTTCCTCCCCAATTTCCATCCCTTGAAAAATCAACCTTTCGTTCCCATTCCCTCAAATCCAGCACCTCTTTCTCATCTGGGTCTGTGACAAAAGCATCAATGGCGGCTTCTTCTCCATCCACGGAGGCAGAGACCAAGCCCTTTTCTGTTCTATTTGTGTGCCTGGGCAACATCTGCAGAAGCCCAGCTGCTGAAGGGGTCTTCAGAGACTTGGTGAAGAAAAGGGGTTTGGATTCCAAGTTCAAGATTGACTCTGCTGGAACCATTGATTACCATGAGGGAAATCAAGCAGACCCAAGAATGAGGGCAGCCTCTAAAAGGCGTGGCATTGAGATAACTTCTTTATCTAGGCCAATCCGGCTGCCCGATTTTAGAGATTTTGATCTTATCCTTGCAATGGACAATCAGAACCGAGATGATATAATAGAGGCGTTTAATAGGTGGAAATTTAGAGAACCTCTACCTGAGGATGCTCATAAAAAGGTTAAGTTAATGTGTTCTTATTGTAAGAAACATGATGAAACTGAAGTACCGGACCCTTATTATGGTGGACCACAAGGTTTTGAGAAGGTTTTGGATTTACTTGAAGATGCATGTGAATCATTGTTGGACAGCATCTTGGCTGAGAACAAACACATTTTGGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMWPc

Protein Analysis

248

Amino Acids

27.7

Weight (kDa)

8.18

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44620 AT3G44620
fragaria_vesca FvH4_3g24360 FvH4_3g24360 FvH4_3g24360
malus_domestica MD11G1159700.v1.1
prunus_persica Prupe.6G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043851
rosa_laevigata RLG00000034219
rosa_multiflora Rmu_sc0010851.1_g000001
rosa_roxburghii Rroxscaffold_1G00037200
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292800 Rh5CG328500 Rh5DG309800
rosa_wichuraiana Rw5G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 197
AcsI RAATTY 2 cut(s) 37, 539
AcuI CTGAAG 3 cut(s) 280, 306, 639
AfaI GTAC 2 cut(s) 19, 624
AfiI CCNNNNNNNGG 3 cut(s) 411, 490, 638
AgsI TTSAA 4 cut(s) 36, 119, 337, 680
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 2 cut(s) 218, 294
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 3 cut(s) 281, 401, 454
ApoI RAATTY 2 cut(s) 37, 539
AspS9I GGNCC 2 cut(s) 628, 644
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 628, 644
AxyI CCTNAGG 1 cut(s) 558
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BbsI GAAGAC 1 cut(s) 286
BbvI GCAGC 3 cut(s) 268, 413, 441
BccI CCATC 2 cut(s) 118, 217
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 218, 294
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 451
BisI GCNGC 4 cut(s) 198, 282, 402, 455
BlsI GCNGC 4 cut(s) 199, 283, 403, 456
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 2 cut(s) 628, 644
BmgT120I GGNCC 2 cut(s) 628, 644
BmiI GGNNCC 2 cut(s) 355, 630
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 4 cut(s) 197, 553, 673, 717
BpiI GAAGAC 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 213, 256
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 490, 638
Bse21I CCTNAGG 1 cut(s) 558
Bse3DI GCAATG 1 cut(s) 495
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 213, 256
BseGI GGATG 3 cut(s) 110, 209, 568
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 411, 490, 638
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 549, 708
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 268, 413, 441
BseYI CCCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 445
BsiSI CCGG 2 cut(s) 451, 626
BslI CCNNNNNNNGG 3 cut(s) 411, 490, 638
BsmAI GTCTC 2 cut(s) 218, 294
BsnI GGCC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 475
BspACI CCGC 2 cut(s) 64, 197
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 2 cut(s) 550, 709
BspLI GGNNCC 2 cut(s) 355, 630
BspMAI CTGCAG 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 495
BssECI CCNNGG 2 cut(s) 213, 256
BssMI GATC 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 17, 22
BstAPI GCANNNNNTGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 558, 717
BstDSI CCRYGG 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 3 cut(s) 110, 209, 568
BstKTI GATC 1 cut(s) 478
BstMAI GTCTC 2 cut(s) 218, 294
BstMBI GATC 1 cut(s) 475
BstMWI GCNNNNNNNGC 3 cut(s) 194, 267, 451
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 268, 413, 441
BstV2I GAAGAC 1 cut(s) 286
Bsu36I CCTNAGG 1 cut(s) 558
BsuRI GGCC 1 cut(s) 445
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 3 cut(s) 110, 209, 568
CaiI CAGNNNCTG 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 628, 644
Csp6I GTAC 2 cut(s) 18, 623
CviAII CATG 3 cut(s) 368, 608, 687
CviJI RGCY 8 cut(s) 200, 232, 276, 281, 404, 445, 454, 716
CviKI_1 RGCY 8 cut(s) 200, 232, 276, 281, 404, 445, 454, 716
CviQI GTAC 2 cut(s) 18, 623
DdeI CTNAG 2 cut(s) 558, 717
DpnI GATC 1 cut(s) 477
DpnII GATC 1 cut(s) 475
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 628, 644
Eco57I CTGAAG 3 cut(s) 280, 306, 639
Eco81I CCTNAGG 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 688
FaeI CATG 3 cut(s) 371, 611, 690
FaiI YATR 6 cut(s) 369, 515, 570, 609, 639, 688
FatI CATG 3 cut(s) 367, 607, 686
Fnu4HI GCNGC 4 cut(s) 198, 282, 402, 455
FokI GGATG 3 cut(s) 97, 196, 575
Fsp4HI GCNGC 4 cut(s) 198, 282, 402, 455
FspBI CTAG 1 cut(s) 441
GluI GCNGC 4 cut(s) 198, 282, 402, 455
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 445
HapII CCGG 2 cut(s) 451, 626
Hin1II CATG 3 cut(s) 371, 611, 690
HinfI GANTC 4 cut(s) 326, 344, 692, 737
HpaII CCGG 2 cut(s) 451, 626
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 2 cut(s) 299, 501
Hpy188III TCNNGA 2 cut(s) 337, 741
Hpy8I GTNNAC 1 cut(s) 644
HpyAV CCTTC 3 cut(s) 42, 281, 655
HpyCH4III ACNGT 2 cut(s) 17, 22
HpyCH4V TGCA 4 cut(s) 13, 270, 488, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 267, 451
HpyF3I CTNAG 2 cut(s) 558, 717
Hsp92II CATG 3 cut(s) 371, 611, 690
Kzo9I GATC 1 cut(s) 475
LpnPI CCDG 9 cut(s) 156, 166, 242, 269, 291, 336, 464, 570, 639
Lsp1109I GCAGC 3 cut(s) 268, 413, 441
LweI GCATC 4 cut(s) 197, 553, 673, 717
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 477
MboI GATC 1 cut(s) 475
MboII GAAGA 7 cut(s) 80, 83, 86, 195, 286, 322, 692
MluCI AATT 3 cut(s) 37, 104, 539
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 2 cut(s) 84, 681
Mph1103I ATGCAT 1 cut(s) 688
MseI TTAA 3 cut(s) 528, 579, 584
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 451, 626
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 194, 267, 451
NdeII GATC 1 cut(s) 475
NlaIII CATG 3 cut(s) 371, 611, 690
NlaIV GGNNCC 2 cut(s) 355, 630
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 690
PfeI GAWTC 3 cut(s) 326, 692, 737
PkrI GCNGC 4 cut(s) 199, 283, 403, 456
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 355, 630
PspPI GGNCC 2 cut(s) 628, 644
PstI CTGCAG 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 2 cut(s) 19, 624
RsaNI GTAC 2 cut(s) 18, 623
SaqAI TTAA 3 cut(s) 528, 579, 584
SatI GCNGC 4 cut(s) 198, 282, 402, 455
Sau3AI GATC 1 cut(s) 475
Sau96I GGNCC 2 cut(s) 628, 644
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 257
SetI ASST 9 cut(s) 131, 161, 283, 536, 553, 559, 579, 655, 666
SfaNI GCATC 4 cut(s) 197, 553, 673, 717
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 2 cut(s) 628, 644
Sse9I AATT 3 cut(s) 37, 104, 539
SsiI CCGC 2 cut(s) 64, 197
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 17, 22
TasI AATT 3 cut(s) 37, 104, 539
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 326, 692, 737
Tru1I TTAA 3 cut(s) 528, 579, 584
Tru9I TTAA 3 cut(s) 528, 579, 584
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 281, 401, 454
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 627
TspGWI ACGGA 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 628, 644
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 2 cut(s) 37, 539
XceI RCATGY 1 cut(s) 690
XspI CTAG 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.