MD11G1159700.v1.1

low molecular weight

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015172
Physical Location & Seq
Reverse (-)
15608507 .. 15611968
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1159700.v1.1.491

Sequence Viewer

Length: 816 bp
ATGATCCGGAATAAAAGCACTGCCACTCAACTCCATAGCCAGAAGCACTTTTCCATAACCAAATCTAAAATGAAGGCATTGCACGCTGCAGCAGCGACCCCTATAAATTTACAATTTTGCCACTCCACCAACTACCACTCCCTAAAACCCCCATTTCTTCTTCTTCCTCCTCCCCAATTCCCACCCCTCCAAACTCCAACCTCTCCTTCAATTTCTCTCAAACCCGGCACCCGTTTCTCATCTGGGTCCGCAATCAAAGCATCAATGGCGGCTCCTACTCCGTCCACGGCGGCAGAGACCAAGCCCTTCGCCGTCCTCTTTGTGTGCCTCGGCAACATCTGCAGAAGCCCGGCTGCCGAAGGGGTGTTTCGAGACTTGGTCAACAAAAGGGGTTTGGATTCCAAGTTTAAGATTGATTCAGCTGGAACCATTGATTACCATGAGGGGAATCTAGCAGACCCGAGGATGAGGGCAGCCTCGAAAAGGCGTGGCATTGAGATAACTTCATTATCGAGGCCAATCCGGCTGCCTGATTTTCGCGATTTTGATCTTATTCTTGCAATGGACAATCAAAACCGAGCTGATATAATAGAGGCGTTTAATCGGTGGAAATTTAGAGAACCTTTACCTGAGGACGCTCACAAAAAGGTTAAGTTAATGTGCTCTTACTGTAAGAAACATGATGAAACTGAAGTGCCGGACCCTTATTATGGTGGACCACAAGGTTTTGAGAAGGTTTTAGATTTACTTGAAGATGCGTGTGAATCATTGTTGGACAGCATCTTGGCTGAGAACAAACACATCTTCGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMWPc

Protein Analysis

272

Amino Acids

30.17

Weight (kDa)

8.96

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMWPc PF01451 105 - 258 1.3e-39 Low molecular weight phosphotyrosine protein phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44620 AT3G44620
fragaria_vesca FvH4_3g24360 FvH4_3g24360 FvH4_3g24360
malus_domestica MD11G1159700.v1.1
prunus_persica Prupe.6G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043851
rosa_laevigata RLG00000034219
rosa_multiflora Rmu_sc0010851.1_g000001
rosa_roxburghii Rroxscaffold_1G00037200
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292800 Rh5CG328500 Rh5DG309800
rosa_wichuraiana Rw5G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 1 cut(s) 540
AccIII TCCGGA 1 cut(s) 6
AciI CCGC 3 cut(s) 249, 269, 290
AcsI RAATTY 2 cut(s) 106, 611
AcuI CTGAAG 1 cut(s) 711
AfiI CCNNNNNNNGG 2 cut(s) 483, 710
AgsI TTSAA 2 cut(s) 210, 752
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 2 cut(s) 422, 581
AluI AGCT 2 cut(s) 422, 581
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 2 cut(s) 290, 366
Ama87I CYCGRG 1 cut(s) 460
Aor13HI TCCGGA 1 cut(s) 6
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 6 cut(s) 86, 89, 92, 353, 473, 526
ApoI RAATTY 2 cut(s) 106, 611
AspS9I GGNCC 3 cut(s) 246, 700, 716
AsuC2I CCSGG 2 cut(s) 225, 350
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 3 cut(s) 246, 700, 716
AxyI CCTNAGG 1 cut(s) 630
BanI GGYRCC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 665
BbvI GCAGC 6 cut(s) 73, 101, 104, 340, 485, 513
BceAI ACGGC 2 cut(s) 296, 303
BcnI CCSGG 2 cut(s) 225, 350
BcoDI GTCTC 2 cut(s) 290, 366
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 2 cut(s) 87, 340
BglI GCCNNNNNGGC 1 cut(s) 523
BisI GCNGC 8 cut(s) 87, 90, 93, 270, 291, 354, 474, 527
BlsI GCNGC 8 cut(s) 88, 91, 94, 271, 292, 355, 475, 528
Bme1390I CCNGG 2 cut(s) 225, 350
Bme18I GGWCC 3 cut(s) 246, 700, 716
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 3 cut(s) 246, 700, 716
BmiI GGNNCC 5 cut(s) 229, 247, 273, 427, 702
BmrFI CCNGG 2 cut(s) 225, 350
BmsI GCATC 3 cut(s) 269, 745, 789
BpuMI CCSGG 2 cut(s) 225, 350
BsaBI GATNNNNATC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 285, 328, 461
BsaWI WCCGGW 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 710
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 2 cut(s) 77, 567
Bse8I GATNNNNATC 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 6
BseDI CCNNGG 3 cut(s) 285, 328, 461
BseGI GGATG 1 cut(s) 471
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 2 cut(s) 483, 710
BseMI GCAATG 2 cut(s) 77, 567
BseMII CTCAG 2 cut(s) 621, 780
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 6 cut(s) 73, 101, 104, 340, 485, 513
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 1 cut(s) 517
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 665
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 5 cut(s) 7, 225, 350, 523, 698
BslI CCNNNNNNNGG 2 cut(s) 483, 710
BsmAI GTCTC 2 cut(s) 290, 366
BsnI GGCC 1 cut(s) 517
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 665
Bsp13I TCCGGA 1 cut(s) 6
Bsp143I GATC 2 cut(s) 3, 547
Bsp68I TCGCGA 1 cut(s) 540
BspACI CCGC 3 cut(s) 249, 269, 290
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 2 cut(s) 622, 781
BspEI TCCGGA 1 cut(s) 6
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 5 cut(s) 229, 247, 273, 427, 702
BspMAI CTGCAG 2 cut(s) 91, 344
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 2 cut(s) 77, 567
BssECI CCNNGG 3 cut(s) 285, 328, 461
BssMI GATC 2 cut(s) 3, 547
Bst4CI ACNGT 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 630, 789
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 1 cut(s) 471
BstFNI CGCG 1 cut(s) 540
BstKTI GATC 2 cut(s) 6, 550
BstMAI GTCTC 2 cut(s) 290, 366
BstMBI GATC 2 cut(s) 3, 547
BstMWI GCNNNNNNNGC 6 cut(s) 83, 92, 257, 266, 339, 523
BstSCI CCNGG 2 cut(s) 223, 348
BstSFI CTRYAG 2 cut(s) 87, 340
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 6 cut(s) 73, 101, 104, 340, 485, 513
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 1 cut(s) 517
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BtuMI TCGCGA 1 cut(s) 540
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 3 cut(s) 246, 700, 716
CseI GACGC 1 cut(s) 644
CviAII CATG 2 cut(s) 440, 680
DdeI CTNAG 2 cut(s) 630, 789
DpnI GATC 2 cut(s) 5, 549
DpnII GATC 2 cut(s) 3, 547
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 3 cut(s) 246, 700, 716
Eco57I CTGAAG 1 cut(s) 711
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 481
FaeI CATG 2 cut(s) 443, 683
FaiI YATR 7 cut(s) 36, 56, 104, 441, 587, 681, 711
FatI CATG 2 cut(s) 439, 679
Fnu4HI GCNGC 8 cut(s) 87, 90, 93, 270, 291, 354, 474, 527
FokI GGATG 1 cut(s) 478
Fsp4HI GCNGC 8 cut(s) 87, 90, 93, 270, 291, 354, 474, 527
FspBI CTAG 1 cut(s) 452
GluI GCNGC 8 cut(s) 87, 90, 93, 270, 291, 354, 474, 527
HaeIII GGCC 1 cut(s) 517
HapII CCGG 5 cut(s) 7, 225, 350, 523, 698
HgaI GACGC 1 cut(s) 644
Hin1II CATG 2 cut(s) 443, 683
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 5 cut(s) 398, 416, 448, 764, 809
HpaII CCGG 5 cut(s) 7, 225, 350, 523, 698
Hpy166II GTNNAC 3 cut(s) 285, 382, 716
Hpy188III TCNNGA 3 cut(s) 7, 371, 539
Hpy8I GTNNAC 3 cut(s) 285, 382, 716
HpyAV CCTTC 5 cut(s) 67, 216, 316, 353, 727
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4V TGCA 4 cut(s) 82, 89, 342, 560
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 92, 257, 266, 339, 523
HpyF3I CTNAG 2 cut(s) 630, 789
Hsp92II CATG 2 cut(s) 443, 683
Kpn2I TCCGGA 1 cut(s) 6
Kzo9I GATC 2 cut(s) 3, 547
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 6 cut(s) 73, 101, 104, 340, 485, 513
LweI GCATC 3 cut(s) 269, 745, 789
MaeI CTAG 1 cut(s) 452
MalI GATC 2 cut(s) 5, 549
MboI GATC 2 cut(s) 3, 547
MboII GAAGA 5 cut(s) 149, 152, 155, 764, 796
MhlI GDGCHC 1 cut(s) 665
MluCI AATT 5 cut(s) 106, 113, 176, 210, 611
MmeI TCCRAC 2 cut(s) 221, 753
MroI TCCGGA 1 cut(s) 6
MseI TTAA 5 cut(s) 408, 600, 651, 656, 814
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 5 cut(s) 7, 225, 350, 523, 698
MspR9I CCNGG 2 cut(s) 225, 350
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 6 cut(s) 83, 92, 257, 266, 339, 523
NciI CCSGG 2 cut(s) 225, 350
NdeII GATC 2 cut(s) 3, 547
NlaIII CATG 2 cut(s) 443, 683
NlaIV GGNNCC 5 cut(s) 229, 247, 273, 427, 702
NmeAIII GCCGAG 1 cut(s) 309
NruI TCGCGA 1 cut(s) 540
PfeI GAWTC 5 cut(s) 398, 416, 448, 764, 809
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 8 cut(s) 88, 91, 94, 271, 292, 355, 475, 528
PspN4I GGNNCC 5 cut(s) 229, 247, 273, 427, 702
PspPI GGNCC 3 cut(s) 246, 700, 716
PstI CTGCAG 2 cut(s) 91, 344
PsyI GACNNNGTC 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 422
RruI TCGCGA 1 cut(s) 540
SaqAI TTAA 5 cut(s) 408, 600, 651, 656, 814
SatI GCNGC 8 cut(s) 87, 90, 93, 270, 291, 354, 474, 527
Sau3AI GATC 2 cut(s) 3, 547
Sau96I GGNCC 3 cut(s) 246, 700, 716
ScrFI CCNGG 2 cut(s) 225, 350
SduI GDGCHC 1 cut(s) 665
SetI ASST 8 cut(s) 203, 424, 583, 625, 631, 651, 727, 738
SfaNI GCATC 3 cut(s) 269, 745, 789
SfcI CTRYAG 2 cut(s) 87, 340
SinI GGWCC 3 cut(s) 246, 700, 716
Sse9I AATT 5 cut(s) 106, 113, 176, 210, 611
SsiI CCGC 3 cut(s) 249, 269, 290
SspMI CTAG 1 cut(s) 452
StyD4I CCNGG 2 cut(s) 223, 348
TaaI ACNGT 1 cut(s) 671
TaqI TCGA 4 cut(s) 370, 479, 512, 807
TasI AATT 5 cut(s) 106, 113, 176, 210, 611
TauI GCSGC 2 cut(s) 272, 293
TfiI GAWTC 5 cut(s) 398, 416, 448, 764, 809
Tru1I TTAA 5 cut(s) 408, 600, 651, 656, 814
Tru9I TTAA 5 cut(s) 408, 600, 651, 656, 814
TscAI CASTG 1 cut(s) 25
TseI GCWGC 6 cut(s) 86, 89, 92, 353, 473, 526
TspDTI ATGAA 3 cut(s) 86, 495, 699
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 3 cut(s) 246, 700, 716
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 2 cut(s) 106, 611
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.