FvH4_3g24360

low molecular weight

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015172
Physical Location & Seq
Forward (+)
17443973 .. 17446146
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24360.t1

Sequence Viewer

Length: 747 bp
ATGAAGGCATTGCACAGTGGAGTGCCAACCCACCTAACTTCACGACTTTGCCACTCTCTCCACTCCTCCTTAAAACCCCAATTTCATGTTCTTCTCCCACTCTTCCCATCTCTCCAAACCTCAACCTGCCATTCCACTTCTGTCAAATTAACCGCCTCTTTCTCACCTGGGTCTGCCAGCAAGGCCTCAATGGCAGCTTCTACTCCCTCAACAGAGACAGAGACAGAGACCAAACCTTTCTCTGTCCTGTTTGTGTGTTTGGGCAACATCTGCAGAAGCCCAGCTGCTGAAGGAGTCTTCACTGACTTGGTCAAGAAGAGGGGTTTGGATTCCAAGTTCAAGATTGACTCTGCTGGCACTATTGATTACCATGAGGGAAATCAAGCTGACCCAAGAATGAGGGCGGCCTCTAAAAGGCGTGGGATTGAGATAACTTCTCTATCCAGGCCGATTAAGGCGGCTGATTTTCGAGATTTCGATGTTATTCTTGCAATGGACAAGCAAAACCGAGCTGATATTTTGGAGGCGTTTAATAGGTGGAAATTTAGAGAACCACTACCTGAGGATGCTTATAAAAAGGTCAAGTTAATGTGTTCTTATTGTAAGAAACATGATGAAACTGAAGTGCCGGATCCTTATTATGGTGGAGCTCAAGGTTTCGAGAAGGTTTTAGATTTACTTGAAGATGCATGTGAGTCATTGTTGGACAGTGTATTGGCCGAGAACAAGCATATTTTGGATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMWPc

Protein Analysis

249

Amino Acids

27.44

Weight (kDa)

7.1

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMWPc PF01451 82 - 235 1.1e-40 Low molecular weight phosphotyrosine protein phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44620 AT3G44620
fragaria_vesca FvH4_3g24360 FvH4_3g24360 FvH4_3g24360
malus_domestica MD11G1159700.v1.1
prunus_persica Prupe.6G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043851
rosa_laevigata RLG00000034219
rosa_multiflora Rmu_sc0010851.1_g000001
rosa_roxburghii Rroxscaffold_1G00037200
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292800 Rh5CG328500 Rh5DG309800
rosa_wichuraiana Rw5G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 134
AciI CCGC 3 cut(s) 153, 404, 458
AclWI GGATC 2 cut(s) 626, 639
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 2 cut(s) 309, 642
AfiI CCNNNNNNNGG 2 cut(s) 414, 641
AgsI TTSAA 2 cut(s) 340, 683
AjnI CCWGG 2 cut(s) 166, 443
AjuI GAANNNNNNNTTGG 4 cut(s) 72, 104, 308, 340
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 5 cut(s) 197, 284, 386, 512, 650
AluI AGCT 5 cut(s) 197, 284, 386, 512, 650
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 3 cut(s) 209, 215, 221
AlwI GGATC 2 cut(s) 626, 639
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 4 cut(s) 183, 405, 446, 717
ApeKI GCWGC 2 cut(s) 194, 284
ApoI RAATTY 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 156
AxyI CCTNAGG 1 cut(s) 561
BamHI GGATCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 652
BbsI GAAGAC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 2 cut(s) 206, 271
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 2 cut(s) 168, 445
BcoDI GTCTC 3 cut(s) 209, 215, 221
BfmI CTRYAG 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 134
BglI GCCNNNNNGGC 2 cut(s) 182, 191
BisI GCNGC 4 cut(s) 195, 285, 405, 459
BlsI GCNGC 4 cut(s) 196, 286, 406, 460
Bme1390I CCNGG 2 cut(s) 168, 445
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 2 cut(s) 168, 445
BmsI GCATC 2 cut(s) 556, 676
BpiI GAAGAC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 641
Bse21I CCTNAGG 1 cut(s) 561
Bse3DI GCAATG 2 cut(s) 8, 498
BseBI CCWGG 2 cut(s) 168, 445
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 414, 641
BseMI GCAATG 2 cut(s) 8, 498
BseMII CTCAG 1 cut(s) 552
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 206, 271
BseYI CCCAGC 1 cut(s) 280
BshFI GGCC 4 cut(s) 185, 407, 448, 719
BsiHKAI GWGCWC 1 cut(s) 652
BsiSI CCGG 1 cut(s) 629
BslI CCNNNNNNNGG 2 cut(s) 414, 641
BsmAI GTCTC 3 cut(s) 209, 215, 221
BsnI GGCC 4 cut(s) 185, 407, 448, 719
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 1 cut(s) 631
BspACI CCGC 3 cut(s) 153, 404, 458
BspANI GGCC 4 cut(s) 185, 407, 448, 719
BspCNI CTCAG 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 275
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 626, 639
BspTNI GGTCTC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 8, 498
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 1 cut(s) 631
Bst2UI CCWGG 2 cut(s) 168, 445
Bst4CI ACNGT 2 cut(s) 17, 710
Bst6I CTCTTC 2 cut(s) 107, 311
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 178, 355
BstDEI CTNAG 1 cut(s) 561
BstENI CCTNNNNNAGG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 571
BstKTI GATC 1 cut(s) 634
BstMAI GTCTC 3 cut(s) 209, 215, 221
BstMBI GATC 1 cut(s) 631
BstMWI GCNNNNNNNGC 3 cut(s) 182, 191, 270
BstNI CCWGG 2 cut(s) 168, 445
BstNSI RCATGY 1 cut(s) 693
BstSCI CCNGG 2 cut(s) 166, 443
BstSFI CTRYAG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 206, 271
BstV2I GAAGAC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 4 cut(s) 185, 407, 448, 719
BtsCI GGATG 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 22, 300, 715
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 178, 355
CaiI CAGNNNCTG 1 cut(s) 287
CviAII CATG 4 cut(s) 86, 371, 611, 690
DdeI CTNAG 1 cut(s) 561
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 2 cut(s) 107, 311
EarI CTCTTC 2 cut(s) 107, 311
Ecl136II GAGCTC 1 cut(s) 650
Eco147I AGGCCT 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 652
Eco31I GGTCTC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 650
Eco57I CTGAAG 2 cut(s) 309, 642
Eco81I CCTNAGG 1 cut(s) 561
EcoICRI GAGCTC 1 cut(s) 650
EcoNI CCTNNNNNAGG 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 166, 443
EcoT22I ATGCAT 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 652
FaeI CATG 4 cut(s) 89, 374, 614, 693
FaiI YATR 7 cut(s) 87, 372, 573, 612, 642, 691, 732
FatI CATG 4 cut(s) 85, 370, 610, 689
Fnu4HI GCNGC 4 cut(s) 195, 285, 405, 459
FokI GGATG 1 cut(s) 578
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 4 cut(s) 195, 285, 405, 459
GluI GCNGC 4 cut(s) 195, 285, 405, 459
GsaI CCCAGC 1 cut(s) 284
HaeIII GGCC 4 cut(s) 185, 407, 448, 719
HapII CCGG 1 cut(s) 629
Hin1II CATG 4 cut(s) 89, 374, 614, 693
HinfI GANTC 5 cut(s) 294, 329, 347, 695, 740
HpaII CCGG 1 cut(s) 629
HphI GGTGA 1 cut(s) 156
Hpy188III TCNNGA 5 cut(s) 42, 313, 340, 470, 661
HpyAV CCTTC 2 cut(s) 284, 658
HpyCH4III ACNGT 2 cut(s) 17, 710
HpyCH4V TGCA 4 cut(s) 13, 273, 491, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 191, 270
HpyF3I CTNAG 1 cut(s) 561
Hsp92II CATG 4 cut(s) 89, 374, 614, 693
Kzo9I GATC 1 cut(s) 631
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 2 cut(s) 206, 271
LweI GCATC 2 cut(s) 556, 676
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MboII GAAGA 5 cut(s) 83, 94, 289, 328, 695
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 3 cut(s) 80, 146, 542
MlyI GAGTC 3 cut(s) 303, 341, 704
MmeI TCCRAC 1 cut(s) 684
Mph1103I ATGCAT 1 cut(s) 691
MseI TTAA 5 cut(s) 71, 149, 453, 531, 587
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 629
MspR9I CCNGG 2 cut(s) 168, 445
MvaI CCWGG 2 cut(s) 168, 445
MwoI GCNNNNNNNGC 3 cut(s) 182, 191, 270
NdeII GATC 1 cut(s) 631
NlaIII CATG 4 cut(s) 89, 374, 614, 693
NlaIV GGNNCC 1 cut(s) 633
NmeAIII GCCGAG 1 cut(s) 745
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 1 cut(s) 693
PceI AGGCCT 1 cut(s) 185
PfeI GAWTC 2 cut(s) 329, 740
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 4 cut(s) 196, 286, 406, 460
PleI GAGTC 3 cut(s) 302, 341, 703
PpsI GAGTC 3 cut(s) 302, 341, 703
PsiI TTATAA 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 166, 443
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 2 cut(s) 166, 443
PspN4I GGNNCC 1 cut(s) 633
PstI CTGCAG 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 652
SaqAI TTAA 5 cut(s) 71, 149, 453, 531, 587
SatI GCNGC 4 cut(s) 195, 285, 405, 459
Sau3AI GATC 1 cut(s) 631
SchI GAGTC 3 cut(s) 303, 341, 704
ScrFI CCNGG 2 cut(s) 168, 445
SduI GDGCHC 1 cut(s) 652
SfaNI GCATC 2 cut(s) 556, 676
SfcI CTRYAG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
Sse9I AATT 3 cut(s) 80, 146, 542
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 3 cut(s) 153, 404, 458
SstI GAGCTC 1 cut(s) 652
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 166, 443
TaaI ACNGT 2 cut(s) 17, 710
TaqI TCGA 3 cut(s) 469, 477, 660
TasI AATT 3 cut(s) 80, 146, 542
TauI GCSGC 2 cut(s) 407, 461
TfiI GAWTC 2 cut(s) 329, 740
Tru1I TTAA 5 cut(s) 71, 149, 453, 531, 587
Tru9I TTAA 5 cut(s) 71, 149, 453, 531, 587
TscAI CASTG 3 cut(s) 22, 307, 715
TseI GCWGC 2 cut(s) 194, 284
TspDTI ATGAA 3 cut(s) 17, 74, 630
TspRI CASTG 3 cut(s) 22, 307, 715
Tth111I GACNNNGTC 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 412
XapI RAATTY 1 cut(s) 542
XceI RCATGY 1 cut(s) 693
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.