Rroxscaffold_1G00037200

low molecular weight

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015172
Physical Location & Seq
Reverse (-)
54273785 .. 54275896
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037200.1

Sequence Viewer

Length: 768 bp
ATGAAGGCATTGCACAGTGGAGTGCCAACCCACCTAAATTTACGACTTTGCCACTCCACCCAGCCCTCCCTAAAACCCCAATTACTTGTTCTTCTTCCACACTTCCCATCTCTCCAAACCCCGACGTTTCACTCAACTTCCCTCAAATTGACCGCCTCTTTCTCATCTGGGTCTGCGAGCAAATCATCAATGGCAGCTTCTGCCCCCTCCACGGAGGCAGAGACCAAACCCTTCTCTGTCCTCTTTGTGTGCTTGGGCAACATCTGCAGGAGCCCAGCTGCCGAAGGAGTCTTCAAGGACTTGGTCAAGAAAAGGGGTCTGGATTCCAAGTTCAAGATCGACTCTGCTGGCACCATTAATTACCATGAGGTAGTTGTGTTTGTTGGTGTTAAAAAGGGAAATCAAGCGGACCCAAGAATGAGGGCAGCGGCTAAAAGGCGTGGGATTGAGATAACATCTTTGTCCAGGCCAATCAAGCTGCCTGATTTTCGAGATTTCGATGTTATTCTTGCAATGGACAAGCAAAACCGAGCTGATATTTTGGAGGCGTTTAATCGGTGGAAATTTAGAGAACCACTACCTGAGGATGCTTATAAAAAGGTCAAGTTAATGTGTTCTTATTGTAAGAAACACGATGAAACTGAAGTGCCGGATCCTTATTATGGTGGACCTCAAGGTTTTGAGAAGGTTTTAGATTTACTTGAAGATGCATGTGAATCATTGTTGGACAGCATATTGGCTGAGAACAAGCATATTTTGGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMWPc

Protein Analysis

255

Amino Acids

28.29

Weight (kDa)

8.81

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMWPc PF01451 80 - 242 1.4e-36 Low molecular weight phosphotyrosine protein phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44620 AT3G44620
fragaria_vesca FvH4_3g24360 FvH4_3g24360 FvH4_3g24360
malus_domestica MD11G1159700.v1.1
prunus_persica Prupe.6G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043851
rosa_laevigata RLG00000034219
rosa_multiflora Rmu_sc0010851.1_g000001
rosa_roxburghii Rroxscaffold_1G00037200
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292800 Rh5CG328500 Rh5DG309800
rosa_wichuraiana Rw5G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AccB1I GGYRCC 1 cut(s) 350
AciI CCGC 3 cut(s) 153, 407, 428
AclWI GGATC 2 cut(s) 647, 660
AcsI RAATTY 2 cut(s) 37, 563
AcuI CTGAAG 1 cut(s) 663
AfiI CCNNNNNNNGG 2 cut(s) 211, 662
AgsI TTSAA 3 cut(s) 295, 334, 704
AjnI CCWGG 1 cut(s) 464
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 4 cut(s) 197, 278, 478, 533
AluI AGCT 4 cut(s) 197, 278, 478, 533
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 647, 660
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 194, 278, 425, 478
ApoI RAATTY 2 cut(s) 37, 563
AseI ATTAAT 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 409, 668
AvaII GGWCC 2 cut(s) 409, 668
AxyI CCTNAGG 1 cut(s) 582
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 4 cut(s) 206, 265, 437, 465
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 5 cut(s) 195, 279, 426, 429, 479
BlsI GCNGC 5 cut(s) 196, 280, 427, 430, 480
Bme1390I CCNGG 1 cut(s) 466
Bme18I GGWCC 2 cut(s) 409, 668
BmgT120I GGNCC 2 cut(s) 409, 668
BmiI GGNNCC 4 cut(s) 272, 352, 411, 654
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 577, 697
BpiI GAAGAC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 662
Bse21I CCTNAGG 1 cut(s) 582
Bse3DI GCAATG 2 cut(s) 8, 519
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 2 cut(s) 211, 662
BseMI GCAATG 2 cut(s) 8, 519
BseMII CTCAG 2 cut(s) 573, 732
BseXI GCAGC 4 cut(s) 206, 265, 437, 465
BseYI CCCAGC 2 cut(s) 60, 274
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 650
BslI CCNNNNNNNGG 2 cut(s) 211, 662
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 469
Bso31I GGTCTC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 336, 652
BspACI CCGC 3 cut(s) 153, 407, 428
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 2 cut(s) 574, 733
BspLI GGNNCC 4 cut(s) 272, 352, 411, 654
BspMAI CTGCAG 1 cut(s) 269
BspPI GGATC 2 cut(s) 647, 660
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 8, 519
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 336, 652
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 17
BstAPI GCANNNNNTGC 2 cut(s) 200, 264
BstC8I GCNNGC 2 cut(s) 178, 349
BstDEI CTNAG 2 cut(s) 582, 741
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 2 cut(s) 339, 655
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 336, 652
BstMWI GCNNNNNNNGC 3 cut(s) 200, 264, 475
BstNI CCWGG 1 cut(s) 466
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 1 cut(s) 265
BstV1I GCAGC 4 cut(s) 206, 265, 437, 465
BstV2I GAAGAC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
Bsu36I CCTNAGG 1 cut(s) 582
BsuRI GGCC 1 cut(s) 469
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 178, 349
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 409, 668
CviAII CATG 2 cut(s) 365, 711
CviJI RGCY 9 cut(s) 64, 197, 273, 278, 431, 469, 478, 533, 740
CviKI_1 RGCY 9 cut(s) 64, 197, 273, 278, 431, 469, 478, 533, 740
DdeI CTNAG 2 cut(s) 582, 741
DpnI GATC 2 cut(s) 338, 654
DpnII GATC 2 cut(s) 336, 652
Eco24I GRGCYC 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 409, 668
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 275
FaeI CATG 2 cut(s) 368, 714
FaiI YATR 6 cut(s) 366, 594, 663, 712, 734, 753
FatI CATG 2 cut(s) 364, 710
Fnu4HI GCNGC 5 cut(s) 195, 279, 426, 429, 479
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 5 cut(s) 195, 279, 426, 429, 479
GluI GCNGC 5 cut(s) 195, 279, 426, 429, 479
GsaI CCCAGC 2 cut(s) 64, 278
HaeIII GGCC 1 cut(s) 469
HapII CCGG 1 cut(s) 650
Hin1II CATG 2 cut(s) 368, 714
HinfI GANTC 5 cut(s) 288, 323, 341, 716, 761
HpaII CCGG 1 cut(s) 650
Hpy166II GTNNAC 1 cut(s) 668
Hpy188III TCNNGA 4 cut(s) 307, 320, 334, 491
Hpy8I GTNNAC 1 cut(s) 668
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 241, 278, 679
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 13, 267, 512, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 264, 475
HpyF3I CTNAG 2 cut(s) 582, 741
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 2 cut(s) 368, 714
Kzo9I GATC 2 cut(s) 336, 652
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 4 cut(s) 206, 265, 437, 465
LweI GCATC 2 cut(s) 577, 697
MaeII ACGT 1 cut(s) 125
MalI GATC 2 cut(s) 338, 654
MboI GATC 2 cut(s) 336, 652
MboII GAAGA 4 cut(s) 83, 86, 283, 716
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 5 cut(s) 37, 80, 146, 358, 563
MlyI GAGTC 2 cut(s) 297, 335
MmeI TCCRAC 1 cut(s) 705
Mph1103I ATGCAT 1 cut(s) 712
MseI TTAA 5 cut(s) 357, 390, 552, 608, 766
MspA1I CMGCKG 2 cut(s) 278, 428
MspI CCGG 1 cut(s) 650
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 3 cut(s) 200, 264, 475
NdeII GATC 2 cut(s) 336, 652
NlaIII CATG 2 cut(s) 368, 714
NlaIV GGNNCC 4 cut(s) 272, 352, 411, 654
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 1 cut(s) 714
PfeI GAWTC 3 cut(s) 323, 716, 761
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 5 cut(s) 196, 280, 427, 430, 480
PleI GAGTC 2 cut(s) 296, 335
PpsI GAGTC 2 cut(s) 296, 335
PshBI ATTAAT 1 cut(s) 357
PsiI TTATAA 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 464
PspFI CCCAGC 2 cut(s) 60, 274
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 4 cut(s) 272, 352, 411, 654
PspPI GGNCC 2 cut(s) 409, 668
PstI CTGCAG 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 652
PsyI GACNNNGTC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 278
SaqAI TTAA 5 cut(s) 357, 390, 552, 608, 766
SatI GCNGC 5 cut(s) 195, 279, 426, 429, 479
Sau3AI GATC 2 cut(s) 336, 652
Sau96I GGNCC 2 cut(s) 409, 668
SchI GAGTC 2 cut(s) 297, 335
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 2 cut(s) 577, 697
SfcI CTRYAG 1 cut(s) 265
SinI GGWCC 2 cut(s) 409, 668
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
Sse9I AATT 5 cut(s) 37, 80, 146, 358, 563
SsiI CCGC 3 cut(s) 153, 407, 428
StyD4I CCNGG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 339, 490, 498
TasI AATT 5 cut(s) 37, 80, 146, 358, 563
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 3 cut(s) 323, 716, 761
Tru1I TTAA 5 cut(s) 357, 390, 552, 608, 766
Tru9I TTAA 5 cut(s) 357, 390, 552, 608, 766
TscAI CASTG 1 cut(s) 22
TseI GCWGC 4 cut(s) 194, 278, 425, 478
TspDTI ATGAA 2 cut(s) 17, 651
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 409, 668
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 2 cut(s) 37, 563
XceI RCATGY 1 cut(s) 714
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.