Rw5G027150

low molecular weight

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015172
Physical Location & Seq
Forward (+)
39866202 .. 39868364
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027150.1

Sequence Viewer

Length: 771 bp
ATGCCCAATATCTCCACACTTCCGGGAGAAATGAAGGCATTGCACAGTGGAGTGCCAACCCAACTCAATTTACGACTTTGCCACTCCACCCAGCCCTCCCTAAAACCCCAATTACTTGTTCTTCTTCCACACTTCCCATCTCTCCAAACCCCAACGTTTCACTCAACTTCCCTCAAATTCACCGCCTCTTTCTCATCTGGGTCTGCAAGAAAAGCATCAATGGCTGCTTCTGCCCCCTCCACGGAGGCAGAGACCAAACCCTTCTCTGTCCTCTTTGTGTGCTTGGGCAACATCTGCAGAAGCCCAGCTGCCGAAGGAGTCTTCACGGACTTGGTCAAGAAAAGGGGTCTGGATTCCAAGTTCAAGATTGACTCTGCTGGCACCATTAATTACCATGAGGGAAATCAAGCGGACCCAAGAATGAGGGCAGCGGCTAAAAGGCGTGGGATTGAGATAACATCTTTGTCCAGGCCAATCAAGCTGCCTGATTTTCGAGATTTCGATGTTATTCTTGCAATGGACAAGCAAAACCGAGCTGATATTTTGGAGGCATTTAATCGGTGGAAATTTAGAGAACCACTGCCTGAGGATGCTTATAAAAAGGTCAAGTTAATGTGTTCTTATTGTAAGAAACACGATGAAACTGAAGTGCCGGATCCTTATTATGGTGGACCTCAAGGTTTTGAGAAGGTTTTAGATTTACTTGAAGATGCATGTGAATCATTGTTGGACAGCATATTGGCTGAGAACAAGCATATTTTGGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMWPc

Protein Analysis

256

Amino Acids

28.43

Weight (kDa)

8.16

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMWPc PF01451 90 - 243 2.2e-40 Low molecular weight phosphotyrosine protein phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44620 AT3G44620
fragaria_vesca FvH4_3g24360 FvH4_3g24360 FvH4_3g24360
malus_domestica MD11G1159700.v1.1
prunus_persica Prupe.6G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043851
rosa_laevigata RLG00000034219
rosa_multiflora Rmu_sc0010851.1_g000001
rosa_roxburghii Rroxscaffold_1G00037200
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292800 Rh5CG328500 Rh5DG309800
rosa_wichuraiana Rw5G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 3 cut(s) 183, 410, 431
AclI AACGTT 1 cut(s) 155
AclWI GGATC 2 cut(s) 650, 663
AcsI RAATTY 2 cut(s) 176, 566
AcuI CTGAAG 1 cut(s) 666
AfiI CCNNNNNNNGG 2 cut(s) 241, 665
AgsI TTSAA 2 cut(s) 364, 707
AjnI CCWGG 1 cut(s) 467
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 3 cut(s) 308, 481, 536
AluI AGCT 3 cut(s) 308, 481, 536
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 2 cut(s) 650, 663
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 4 cut(s) 224, 308, 428, 481
ApoI RAATTY 2 cut(s) 176, 566
AseI ATTAAT 1 cut(s) 387
AspS9I GGNCC 2 cut(s) 412, 671
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 2 cut(s) 412, 671
AxyI CCTNAGG 1 cut(s) 585
BamHI GGATCC 1 cut(s) 655
BanI GGYRCC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 313
BbvI GCAGC 4 cut(s) 211, 295, 440, 468
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 469
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 5 cut(s) 225, 309, 429, 432, 482
BlsI GCNGC 5 cut(s) 226, 310, 430, 433, 483
Bme1390I CCNGG 2 cut(s) 24, 469
Bme18I GGWCC 2 cut(s) 412, 671
BmgT120I GGNCC 2 cut(s) 412, 671
BmiI GGNNCC 3 cut(s) 382, 414, 657
BmrFI CCNGG 2 cut(s) 24, 469
BmsI GCATC 3 cut(s) 224, 580, 700
BpiI GAAGAC 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 665
Bse21I CCTNAGG 1 cut(s) 585
Bse3DI GCAATG 2 cut(s) 38, 522
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 595
BseLI CCNNNNNNNGG 2 cut(s) 241, 665
BseMI GCAATG 2 cut(s) 38, 522
BseMII CTCAG 2 cut(s) 576, 735
BseXI GCAGC 4 cut(s) 211, 295, 440, 468
BseYI CCCAGC 2 cut(s) 90, 304
BshFI GGCC 1 cut(s) 472
BshNI GGYRCC 1 cut(s) 380
BsiSI CCGG 2 cut(s) 23, 653
BslI CCNNNNNNNGG 2 cut(s) 241, 665
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 472
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 655
BspACI CCGC 3 cut(s) 183, 410, 431
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 2 cut(s) 577, 736
BspLI GGNNCC 3 cut(s) 382, 414, 657
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 2 cut(s) 650, 663
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 38, 522
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 655
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 2 cut(s) 585, 744
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 595
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 5 cut(s) 212, 221, 230, 294, 478
BstNI CCWGG 1 cut(s) 469
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 22, 467
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 211, 295, 440, 468
BstV2I GAAGAC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
Bsu36I CCTNAGG 1 cut(s) 585
BsuRI GGCC 1 cut(s) 472
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 595
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 2 cut(s) 52, 578
Cac8I GCNNGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 412, 671
CviAII CATG 2 cut(s) 395, 714
CviJI RGCY 9 cut(s) 94, 224, 303, 308, 434, 472, 481, 536, 743
CviKI_1 RGCY 9 cut(s) 94, 224, 303, 308, 434, 472, 481, 536, 743
DdeI CTNAG 2 cut(s) 585, 744
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 412, 671
Eco57I CTGAAG 1 cut(s) 666
Eco81I CCTNAGG 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 715
FaeI CATG 2 cut(s) 398, 717
FaiI YATR 6 cut(s) 396, 597, 666, 715, 737, 756
FatI CATG 2 cut(s) 394, 713
Fnu4HI GCNGC 5 cut(s) 225, 309, 429, 432, 482
FokI GGATG 1 cut(s) 602
Fsp4HI GCNGC 5 cut(s) 225, 309, 429, 432, 482
GluI GCNGC 5 cut(s) 225, 309, 429, 432, 482
GsaI CCCAGC 2 cut(s) 94, 308
HaeIII GGCC 1 cut(s) 472
HapII CCGG 2 cut(s) 23, 653
Hin1II CATG 2 cut(s) 398, 717
HinfI GANTC 5 cut(s) 318, 353, 371, 719, 764
HpaII CCGG 2 cut(s) 23, 653
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 671
Hpy188III TCNNGA 4 cut(s) 337, 350, 364, 494
Hpy8I GTNNAC 1 cut(s) 671
HpyAV CCTTC 4 cut(s) 28, 271, 308, 682
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 5 cut(s) 43, 206, 297, 515, 713
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 221, 230, 294, 478
HpyF3I CTNAG 2 cut(s) 585, 744
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 2 cut(s) 398, 717
Kzo9I GATC 1 cut(s) 655
Lsp1109I GCAGC 4 cut(s) 211, 295, 440, 468
LweI GCATC 3 cut(s) 224, 580, 700
MaeII ACGT 1 cut(s) 155
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 4 cut(s) 113, 116, 313, 719
MflI RGATCY 1 cut(s) 655
MluCI AATT 5 cut(s) 67, 110, 176, 388, 566
MlyI GAGTC 2 cut(s) 327, 365
MmeI TCCRAC 1 cut(s) 708
Mph1103I ATGCAT 1 cut(s) 715
MseI TTAA 4 cut(s) 387, 555, 611, 769
MspA1I CMGCKG 2 cut(s) 308, 431
MspI CCGG 2 cut(s) 23, 653
MspR9I CCNGG 2 cut(s) 24, 469
MvaI CCWGG 1 cut(s) 469
MwoI GCNNNNNNNGC 5 cut(s) 212, 221, 230, 294, 478
NciI CCSGG 1 cut(s) 24
NdeII GATC 1 cut(s) 655
NlaIII CATG 2 cut(s) 398, 717
NlaIV GGNNCC 3 cut(s) 382, 414, 657
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 717
PfeI GAWTC 3 cut(s) 353, 719, 764
PflFI GACNNNGTC 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 5 cut(s) 226, 310, 430, 433, 483
PleI GAGTC 2 cut(s) 326, 365
PpsI GAGTC 2 cut(s) 326, 365
PshBI ATTAAT 1 cut(s) 387
PsiI TTATAA 1 cut(s) 597
Psp1406I AACGTT 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 467
PspFI CCCAGC 2 cut(s) 90, 304
PspGI CCWGG 1 cut(s) 467
PspN4I GGNNCC 3 cut(s) 382, 414, 657
PspPI GGNCC 2 cut(s) 412, 671
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 655
PsyI GACNNNGTC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 308
SaqAI TTAA 4 cut(s) 387, 555, 611, 769
SatI GCNGC 5 cut(s) 225, 309, 429, 432, 482
Sau3AI GATC 1 cut(s) 655
Sau96I GGNCC 2 cut(s) 412, 671
SchI GAGTC 2 cut(s) 327, 365
ScrFI CCNGG 2 cut(s) 24, 469
SetI ASST 8 cut(s) 158, 310, 483, 538, 606, 676, 682, 693
SfaNI GCATC 3 cut(s) 224, 580, 700
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 2 cut(s) 412, 671
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 5 cut(s) 67, 110, 176, 388, 566
SsiI CCGC 3 cut(s) 183, 410, 431
StyD4I CCNGG 2 cut(s) 22, 467
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 493, 501
TasI AATT 5 cut(s) 67, 110, 176, 388, 566
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 3 cut(s) 353, 719, 764
Tru1I TTAA 4 cut(s) 387, 555, 611, 769
Tru9I TTAA 4 cut(s) 387, 555, 611, 769
TscAI CASTG 2 cut(s) 52, 585
TseI GCWGC 4 cut(s) 224, 308, 428, 481
TspDTI ATGAA 2 cut(s) 47, 654
TspGWI ACGGA 2 cut(s) 257, 341
TspRI CASTG 2 cut(s) 52, 585
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 412, 671
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 2 cut(s) 176, 566
XceI RCATGY 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.