Rh5CG328500

low molecular weight

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015172
Physical Location & Seq
Forward (+)
36710856 .. 36712642
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG328500.1

Sequence Viewer

Length: 816 bp
ATGGAGAAGTTTCTGGTCACACATCTAAAGCTCCATGACATACCCAATATCTCCGCACTTCCCGGAGAAATGAAGGCATTGCACGGTGTAGTGCCAACCCACCTAAATTTACGACTTTGCCACTCCACCCAGCCCTCCCTCAAAGTAAAACCCCAATTACTTGTTCTTCTTCCACACTTCCCATCTCTCCAAACCCCAACGTTTCACTCAACTTCCCTCAAATTGACCGCCTCTTGCTCATCTGGGTCTGCAAGCAAATCATCAATGGCAGCGTCTGCCCCCTCCACGGAGGCAGAGACGAAACCCTTCTCTGTCCTCTTTGTGTGCTTGGGCAACATCTGCAGAAGCCCAGCTGCCGAAGGAGTCTTCACGGACTTGGTCAAGAAAAGGGGTCTGGATTCCAAGTTCAAGATTGACTCTGCTGGCACCATTAATTACCATGAGGGAAATCAAGCGGACCCAAGAATGAGGGCAGCGGCTAAAAGGCGTGGGATTGAGATAACATCTTTGTCCAGGCCAATCAAGCTGCCTGATTTTCGAGATTTCGATGTTATTCTTGCAATGGACAAGCAAAACCGAGCTGATATTTTGGAGGCATTTAATCGGTGGAAATTTAGAGAACCACTACCTGAGGATGCTTATAAAAAGGTCAAGTTAATGTGTTCTTATTGTAAGAAACACGATGAAACTGAAGTGCCGGATCCTTATTATGGTGGACCTCAAGGTTTCGAGAAGGTTTTAGATTTACTTGAAGATGCATGTGAATCATTGTTGGACAGCATATTGGCTGAGAACAAGCATATTTTGGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LMWPc

Protein Analysis

271

Amino Acids

30.09

Weight (kDa)

8.11

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LMWPc PF01451 105 - 258 2.6e-40 Low molecular weight phosphotyrosine protein phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44620 AT3G44620
fragaria_vesca FvH4_3g24360 FvH4_3g24360 FvH4_3g24360
malus_domestica MD11G1159700.v1.1
prunus_persica Prupe.6G122700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0043851
rosa_laevigata RLG00000034219
rosa_multiflora Rmu_sc0010851.1_g000001
rosa_roxburghii Rroxscaffold_1G00037200
rosa_rugosa Rorug05G0208900
rosa_samantha Rh5AG292800 Rh5CG328500 Rh5DG309800
rosa_wichuraiana Rw5G027150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 4 cut(s) 54, 228, 455, 476
AclI AACGTT 1 cut(s) 200
AclWI GGATC 2 cut(s) 695, 708
AcsI RAATTY 2 cut(s) 106, 611
AcuI CTGAAG 1 cut(s) 711
AfiI CCNNNNNNNGG 2 cut(s) 286, 710
AgsI TTSAA 2 cut(s) 409, 752
AjnI CCWGG 1 cut(s) 512
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 4 cut(s) 31, 353, 526, 581
AluI AGCT 4 cut(s) 31, 353, 526, 581
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 2 cut(s) 695, 708
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 4 cut(s) 269, 353, 473, 526
ApoI RAATTY 2 cut(s) 106, 611
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 457, 716
AsuC2I CCSGG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 457, 716
AxyI CCTNAGG 1 cut(s) 630
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 358
BbvI GCAGC 4 cut(s) 281, 340, 485, 513
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 514
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 340
BisI GCNGC 5 cut(s) 270, 354, 474, 477, 527
BlsI GCNGC 5 cut(s) 271, 355, 475, 478, 528
Bme1390I CCNGG 2 cut(s) 63, 514
Bme18I GGWCC 2 cut(s) 457, 716
BmgT120I GGNCC 2 cut(s) 457, 716
BmiI GGNNCC 3 cut(s) 427, 459, 702
BmrFI CCNGG 2 cut(s) 63, 514
BmsI GCATC 2 cut(s) 625, 745
BpiI GAAGAC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 705
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 710
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 2 cut(s) 77, 567
BseBI CCWGG 1 cut(s) 514
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 2 cut(s) 286, 710
BseMI GCAATG 2 cut(s) 77, 567
BseMII CTCAG 2 cut(s) 621, 780
BseXI GCAGC 4 cut(s) 281, 340, 485, 513
BseYI CCCAGC 2 cut(s) 129, 349
BshFI GGCC 1 cut(s) 517
BshNI GGYRCC 1 cut(s) 425
BsiSI CCGG 2 cut(s) 63, 698
BslI CCNNNNNNNGG 2 cut(s) 286, 710
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 517
Bsp143I GATC 1 cut(s) 700
BspACI CCGC 4 cut(s) 54, 228, 455, 476
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 2 cut(s) 622, 781
BspLI GGNNCC 3 cut(s) 427, 459, 702
BspMAI CTGCAG 1 cut(s) 344
BspPI GGATC 2 cut(s) 695, 708
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 77, 567
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 700
Bst2UI CCWGG 1 cut(s) 514
Bst4CI ACNGT 1 cut(s) 86
BstAPI GCANNNNNTGC 2 cut(s) 275, 339
BstC8I GCNNGC 2 cut(s) 253, 424
BstDEI CTNAG 2 cut(s) 630, 789
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 1 cut(s) 703
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 700
BstMWI GCNNNNNNNGC 3 cut(s) 275, 339, 523
BstNI CCWGG 1 cut(s) 514
BstNSI RCATGY 1 cut(s) 762
BstSCI CCNGG 2 cut(s) 61, 512
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 281, 340, 485, 513
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 1 cut(s) 517
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 640
Cac8I GCNNGC 2 cut(s) 253, 424
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 457, 716
CseI GACGC 1 cut(s) 261
CviAII CATG 3 cut(s) 35, 440, 759
CviJI RGCY 9 cut(s) 31, 133, 348, 353, 479, 517, 526, 581, 788
CviKI_1 RGCY 9 cut(s) 31, 133, 348, 353, 479, 517, 526, 581, 788
DdeI CTNAG 2 cut(s) 630, 789
DpnI GATC 1 cut(s) 702
DpnII GATC 1 cut(s) 700
Eco47I GGWCC 2 cut(s) 457, 716
Eco57I CTGAAG 1 cut(s) 711
Eco81I CCTNAGG 1 cut(s) 630
EcoRII CCWGG 1 cut(s) 512
EcoT22I ATGCAT 1 cut(s) 760
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 3 cut(s) 38, 443, 762
FaiI YATR 8 cut(s) 36, 41, 441, 642, 711, 760, 782, 801
FatI CATG 3 cut(s) 34, 439, 758
Fnu4HI GCNGC 5 cut(s) 270, 354, 474, 477, 527
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 5 cut(s) 270, 354, 474, 477, 527
GluI GCNGC 5 cut(s) 270, 354, 474, 477, 527
GsaI CCCAGC 2 cut(s) 133, 353
HaeIII GGCC 1 cut(s) 517
HapII CCGG 2 cut(s) 63, 698
HgaI GACGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 38, 443, 762
HinfI GANTC 5 cut(s) 363, 398, 416, 764, 809
HpaII CCGG 2 cut(s) 63, 698
Hpy166II GTNNAC 1 cut(s) 716
Hpy188III TCNNGA 5 cut(s) 382, 395, 409, 539, 730
Hpy8I GTNNAC 1 cut(s) 716
HpyAV CCTTC 4 cut(s) 67, 316, 353, 727
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 82, 251, 342, 560, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 339, 523
HpyF3I CTNAG 2 cut(s) 630, 789
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 3 cut(s) 38, 443, 762
Kzo9I GATC 1 cut(s) 700
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 4 cut(s) 281, 340, 485, 513
LweI GCATC 2 cut(s) 625, 745
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 702
MboI GATC 1 cut(s) 700
MboII GAAGA 4 cut(s) 158, 161, 358, 764
MflI RGATCY 1 cut(s) 700
MluCI AATT 5 cut(s) 106, 155, 221, 433, 611
MlyI GAGTC 2 cut(s) 372, 410
MmeI TCCRAC 1 cut(s) 753
Mph1103I ATGCAT 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 4 cut(s) 432, 600, 656, 814
MspA1I CMGCKG 2 cut(s) 353, 476
MspI CCGG 2 cut(s) 63, 698
MspR9I CCNGG 2 cut(s) 63, 514
MvaI CCWGG 1 cut(s) 514
MwoI GCNNNNNNNGC 3 cut(s) 275, 339, 523
NciI CCSGG 1 cut(s) 63
NdeII GATC 1 cut(s) 700
NlaIII CATG 3 cut(s) 38, 443, 762
NlaIV GGNNCC 3 cut(s) 427, 459, 702
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 760
NspI RCATGY 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 398, 764, 809
PflFI GACNNNGTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 5 cut(s) 271, 355, 475, 478, 528
PleI GAGTC 2 cut(s) 371, 410
PpsI GAGTC 2 cut(s) 371, 410
PshBI ATTAAT 1 cut(s) 432
PsiI TTATAA 1 cut(s) 642
Psp1406I AACGTT 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 512
PspFI CCCAGC 2 cut(s) 129, 349
PspGI CCWGG 1 cut(s) 512
PspN4I GGNNCC 3 cut(s) 427, 459, 702
PspPI GGNCC 2 cut(s) 457, 716
PstI CTGCAG 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 700
PsyI GACNNNGTC 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 353
SaqAI TTAA 4 cut(s) 432, 600, 656, 814
SatI GCNGC 5 cut(s) 270, 354, 474, 477, 527
Sau3AI GATC 1 cut(s) 700
Sau96I GGNCC 2 cut(s) 457, 716
SchI GAGTC 2 cut(s) 372, 410
ScrFI CCNGG 2 cut(s) 63, 514
SfaNI GCATC 2 cut(s) 625, 745
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 2 cut(s) 457, 716
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
Sse9I AATT 5 cut(s) 106, 155, 221, 433, 611
SsiI CCGC 4 cut(s) 54, 228, 455, 476
StyD4I CCNGG 2 cut(s) 61, 512
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 538, 546, 729
TasI AATT 5 cut(s) 106, 155, 221, 433, 611
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 3 cut(s) 398, 764, 809
Tru1I TTAA 4 cut(s) 432, 600, 656, 814
Tru9I TTAA 4 cut(s) 432, 600, 656, 814
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 4 cut(s) 269, 353, 473, 526
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 86, 699
TspGWI ACGGA 2 cut(s) 302, 386
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 457, 716
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 2 cut(s) 106, 611
XceI RCATGY 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.