Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015486

Physical Location & Seq

Genomic Coordinates Forward (+)

16386395 .. 16388723

Gene Structure 2329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTTCTTCGACAGCTTTGTCTCTCTCATGGAGCTCCTCTCCTTGTTGGTCACACAGCTTCAATGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAGGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTACTGGAAAGGCTCAGCTTATGACTCCACTTCTGCTCAAGGAATTGAAGATGGAAGACGAACGGATTGAGGCAGAGAAGCAAAGGGTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCAAACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATCTGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAAAGGACATCGACAAACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGAATACATAGCCGAACTCAAGCTTCACCCCGATGTCACTGCTCGAGTTAAGATCAATGTTTTCGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

197

Amino Acids

22.13

Weight (kDa)

9.68

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L9_N	PF01281	51 - 96	7.2e-17	Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C	PF03948	112 - 194	6.5e-20	Ribosomal protein L9, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44890
fragaria_vesca	FvH4_3g30600
malus_domestica	MD03G1128600.v1.1 MD11G1148800.v1.1
prunus_persica	Prupe.6G113200_v2.0.a1
pyrus_communis	pycom11g12170
rosa_chinensis	RchiOBHm_Chr5g0056671
rosa_laevigata	RLG00000035119
rosa_multiflora	Rmu_sc0005086.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023680
rosa_rugosa	Rorug05G0301200
rosa_samantha	Rh5AG371500 Rh5BG383400 Rh5CG406500 Rh5DG396400
rosa_wichuraiana	Rw5G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	2 cut(s)	69, 399
AclWI	GGATC	1 cut(s)	430
AgsI	TTSAA	6 cut(s)	64, 109, 116, 163, 289, 382
AluBI	AGCT	9 cut(s)	17, 36, 60, 137, 215, 259, 434, 466, 544
AluI	AGCT	9 cut(s)	17, 36, 60, 137, 215, 259, 434, 466, 544
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	27, 499
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	564
ArsI	GACNNNNNNTTYG	2 cut(s)	477, 509
AsuHPI	GGTGA	2 cut(s)	340, 539
AvaI	CYCGRG	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	2 cut(s)	286, 349
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BcoDI	GTCTC	2 cut(s)	27, 499
BlpI	GCTNAGC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	3 cut(s)	263, 420, 524
BsaWI	WCCGGW	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	250, 354
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	87, 269
BseNI	ACTGG	2 cut(s)	250, 354
BseRI	GAGGAG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	519
BsmAI	GTCTC	2 cut(s)	27, 499
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	422, 573
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	2 cut(s)	69, 399
BspCNI	CTCAG	2 cut(s)	88, 268
BspPI	GGATC	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	250, 354
BssMI	GATC	2 cut(s)	422, 573
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	96, 138, 255
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	425, 576
BstMAI	GTCTC	2 cut(s)	27, 499
BstMBI	GATC	2 cut(s)	422, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 405
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	422
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	558
CviAII	CATG	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	96, 138, 255
DpnI	GATC	2 cut(s)	424, 575
DpnII	GATC	2 cut(s)	422, 573
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	564
EcoICRI	GAGCTC	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	33
FaiI	YATR	3 cut(s)	31, 263, 530
FatI	CATG	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	447
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	38
HapII	CCGG	1 cut(s)	519
Hin1II	CATG	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	2 cut(s)	340, 539
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	97, 227
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 405
HpyF3I	CTNAG	3 cut(s)	96, 138, 255
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	422, 573
LmnI	GCTCC	3 cut(s)	33, 41, 471
LpnPI	CCDG	6 cut(s)	140, 201, 231, 335, 516, 532
MaeIII	GTNAC	4 cut(s)	51, 172, 427, 556
MalI	GATC	2 cut(s)	424, 575
MboI	GATC	2 cut(s)	422, 573
MboII	GAAGA	4 cut(s)	142, 301, 308, 347
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	109, 156, 197, 284
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	6 cut(s)	49, 160, 245, 304, 331, 452
MseI	TTAA	2 cut(s)	387, 570
MslI	CAYNNNNRTG	1 cut(s)	552
MspI	CCGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	66, 405
NdeII	GATC	2 cut(s)	422, 573
NlaIII	CATG	1 cut(s)	33
NmuCI	GTSAC	4 cut(s)	51, 172, 427, 556
PaeR7I	CTCGAG	1 cut(s)	564
PflFI	GACNNNGTC	1 cut(s)	443
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	38
PspXI	VCTCGAGB	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	422
PsyI	GACNNNGTC	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	387, 570
Sau3AI	GATC	2 cut(s)	422, 573
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	564
SlaI	CTCGAG	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	4 cut(s)	278, 435, 539, 564
SmoI	CTYRAG	4 cut(s)	278, 435, 539, 564
Sse9I	AATT	4 cut(s)	109, 156, 197, 284
SsiI	CCGC	2 cut(s)	69, 399
SstI	GAGCTC	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	4 cut(s)	11, 447, 480, 565
TasI	AATT	4 cut(s)	109, 156, 197, 284
Tru1I	TTAA	2 cut(s)	387, 570
Tru9I	TTAA	2 cut(s)	387, 570
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	4 cut(s)	51, 172, 427, 556
Tsp45I	GTSAC	4 cut(s)	51, 172, 427, 556
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	3 cut(s)	191, 319, 500
TspRI	CASTG	1 cut(s)	565
Tth111I	GACNNNGTC	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	564
XmiI	GTMKAC	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.