Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015486

Physical Location & Seq

Genomic Coordinates Reverse (-)

29267682 .. 29274882

Gene Structure 7201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCGTCAACTGCTTCGACTCTATCATGGAGTTCTACCTCATTGCTTCAAAGCTTTACAGGAAACATAAACCAAGCGACTAAAATAGCAGACAGAGGAACAGCCTTGGTCGTTATCGCTCAAAAGAAAGCCAAGAAAGCTCGAACGATAATTCTGAAGGAGGATGTAGCTGACCTGGGAAAGCAAGGGCAGCTTGTTAGTGTGAAAGCTGGTTATTACAGGAATTTTCTGCTACCAACAGGAAAGGCCCAGATTGTTACTCCTGTGCTGCTCAAGGAAATGAAAATGGAAGAGGAAAGGATTGAGGCTGAGAAAAAGCGGGTAAAAGAAGAGGCGCAGCAACTTGCTCTTATATTTGAAACTGTTGGAGGATTCAAGGTGAAGCGCAAAGGTGGAAAAGGAAAGCTGATTTTTGGAAGCGTCACACCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGGGATGTCGACAAGCGAATAGTATCTCTTCCGGAAATTCGTGAGATTGGAGAATATATTGCTGAACTAAAGCTTCATCCAGAACCATCTACGCTAGTCCTACTCCAACTGTCAGATCCAAGTTATGGAATTATCTCAACTCTTACTCATCACTTACCATGGATGATCGTGGCGGACTTCAATGAATCAAATAAAGGAAAGATTGGTTTTGCTAACTGTAGTTGGAGAGCCTCTTTCCCAGATGCTTTCATCAGACGCTTAAAACTAGACTTGGAATTCTACTTCTGGTGTTTCTGTGTGAAACAGTCTTTATCTAGTACTTTGCAAAGGTCCACAATCCCTAGGCTTTTCCCTCCTATCAAAGAAATTCATTCTGAGCAACTTTGCAATCCTGTAACCCTTCTTGAAAATTGCATTATTCCAGAAGGAATAAACCACACCATCATCACTCTAATCCCCAAGGTGGAAGGTCTCCAGAACATGTCTCAATTTAGACCCATCAGCTTATGCAAGGTTTTCCAGTTGGAAAAGAAAAACTCTCAGTATGGTGGAAAGGCCATACTGAGACTTTGGACTGTTGATGAGTGGATGACTGCACAAGCTATATCTTCTAGTATTAAAAATCTACAGTACTATTTGCTATCTTGGATGAAGCCTCCTGCTCAGGTTTTTAAACTAAATATCAATGGCACCAGATTAGGGTCCCTTATGGTTCGGCGGCGCCGCAGTGCGGCTCAGCGGCTTGACGGTGTGGCCCAAAGTATTTTCAAATGGGCTGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

416

Amino Acids

46.86

Weight (kDa)

9.71

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L9_N	PF01281	50 - 93	6.8e-17	Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C	PF03948	110 - 185	1.6e-14	Ribosomal protein L9, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44890
fragaria_vesca	FvH4_3g30600
malus_domestica	MD03G1128600.v1.1 MD11G1148800.v1.1
prunus_persica	Prupe.6G113200_v2.0.a1
pyrus_communis	pycom11g12170
rosa_chinensis	RchiOBHm_Chr5g0056671
rosa_laevigata	RLG00000035119
rosa_multiflora	Rmu_sc0005086.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023680
rosa_rugosa	Rorug05G0301200
rosa_samantha	Rh5AG371500 Rh5BG383400 Rh5CG406500 Rh5DG396400
rosa_wichuraiana	Rw5G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1154, 1185
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	6 cut(s)	319, 638, 1183, 1189, 1196, 1204
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	4 cut(s)	223, 501, 740, 831
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	5, 1186
AfaI	GTAC	2 cut(s)	784, 1097
AfiI	CCNNNNNNNGG	4 cut(s)	590, 928, 1164, 1195
AflIII	ACRYGT	1 cut(s)	945
AgsI	TTSAA	7 cut(s)	50, 359, 376, 464, 646, 872, 1234
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	9 cut(s)	54, 140, 170, 193, 209, 406, 538, 969, 1067
AluI	AGCT	9 cut(s)	54, 140, 170, 193, 209, 406, 538, 969, 1067
Alw26I	GTCTC	3 cut(s)	941, 954, 1024
AlwI	GGATC	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	3 cut(s)	246, 1020, 1218
ApeKI	GCWGC	3 cut(s)	190, 268, 337
ApoI	RAATTY	4 cut(s)	223, 501, 740, 831
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	3 cut(s)	337, 387, 1188
AspS9I	GGNCC	5 cut(s)	247, 795, 1167, 1219, 1244
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	3 cut(s)	795, 1167, 1244
AvrII	CCTAGG	1 cut(s)	806
BanI	GGYRCC	2 cut(s)	1154, 1185
BbvI	GCAGC	3 cut(s)	202, 255, 349
BccI	CCATC	3 cut(s)	559, 914, 971
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	3 cut(s)	941, 954, 1024
BfaI	CTAG	5 cut(s)	560, 731, 780, 807, 1077
BfmI	CTRYAG	2 cut(s)	682, 1091
BfoI	RGCGCY	1 cut(s)	1189
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	7 cut(s)	191, 269, 338, 1184, 1189, 1197, 1205
BlnI	CCTAGG	1 cut(s)	806
BlpI	GCTNAGC	1 cut(s)	1200
BlsI	GCNGC	7 cut(s)	192, 270, 339, 1185, 1190, 1198, 1206
BmcAI	AGTACT	2 cut(s)	784, 1097
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	3 cut(s)	795, 1167, 1244
BmgT120I	GGNCC	5 cut(s)	247, 795, 1167, 1219, 1244
BmiI	GGNNCC	4 cut(s)	1156, 1168, 1169, 1187
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	697
BpmI	CTGGAG	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	1128
Bpu1102I	GCTNAGC	1 cut(s)	1200
BpuEI	CTTGAG	2 cut(s)	257, 414
BsaHI	GRCGYC	2 cut(s)	5, 1186
BsaI	GGTCTC	1 cut(s)	941
BsaJI	CCNNGG	5 cut(s)	105, 175, 623, 806, 924
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	4 cut(s)	590, 928, 1164, 1195
Bse1I	ACTGG	1 cut(s)	985
Bse3DI	GCAATG	1 cut(s)	41
BseAI	TCCGGA	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	5 cut(s)	105, 175, 623, 806, 924
BseGI	GGATG	6 cut(s)	169, 475, 541, 633, 1059, 1119
BseLI	CCNNNNNNNGG	4 cut(s)	590, 928, 1164, 1195
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	6 cut(s)	300, 831, 1019, 1019, 1142, 1214
BseNI	ACTGG	1 cut(s)	985
BseXI	GCAGC	3 cut(s)	202, 255, 349
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	3 cut(s)	248, 1022, 1220
BshNI	GGYRCC	2 cut(s)	1154, 1185
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	1153
BslI	CCNNNNNNNGG	4 cut(s)	590, 928, 1164, 1195
BsmAI	GTCTC	3 cut(s)	941, 954, 1024
BsmFI	GGGAC	1 cut(s)	1153
BsnI	GGCC	3 cut(s)	248, 1022, 1220
Bso31I	GGTCTC	1 cut(s)	941
Bsp13I	TCCGGA	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	433, 580, 630
Bsp1720I	GCTNAGC	1 cut(s)	1200
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	6 cut(s)	319, 638, 1183, 1189, 1196, 1204
BspANI	GGCC	3 cut(s)	248, 1022, 1220
BspCNI	CTCAG	6 cut(s)	301, 832, 1018, 1020, 1141, 1213
BspEI	TCCGGA	1 cut(s)	496
BspLI	GGNNCC	4 cut(s)	1156, 1168, 1169, 1187
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	2 cut(s)	1154, 1185
BspTNI	GGTCTC	1 cut(s)	941
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	985
BssECI	CCNNGG	5 cut(s)	105, 175, 623, 806, 924
BssMI	GATC	3 cut(s)	433, 580, 630
BssNI	GRCGYC	2 cut(s)	5, 1186
BssT1I	CCWWGG	4 cut(s)	105, 623, 806, 924
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	7 cut(s)	364, 576, 683, 771, 1042, 1095, 1214
Bst6I	CTCTTC	3 cut(s)	285, 324, 498
BstACI	GRCGYC	2 cut(s)	5, 1186
BstDEI	CTNAG	6 cut(s)	309, 840, 1005, 1028, 1128, 1200
BstDSI	CCRYGG	1 cut(s)	623
BstF5I	GGATG	6 cut(s)	169, 475, 541, 633, 1059, 1119
BstH2I	RGCGCY	1 cut(s)	1189
BstHHI	GCGC	3 cut(s)	337, 387, 1188
BstKTI	GATC	3 cut(s)	436, 583, 633
BstMAI	GTCTC	3 cut(s)	941, 954, 1024
BstMBI	GATC	3 cut(s)	433, 580, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 137, 190
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	2 cut(s)	682, 1091
BstV1I	GCAGC	3 cut(s)	202, 255, 349
BstX2I	RGATCY	2 cut(s)	433, 580
BstYI	RGATCY	2 cut(s)	433, 580
BsuRI	GGCC	3 cut(s)	248, 1022, 1220
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	6 cut(s)	169, 475, 541, 633, 1059, 1119
BtsI	GCAGTG	1 cut(s)	1198
BtsIMutI	CAGTG	1 cut(s)	1198
CfoI	GCGC	3 cut(s)	337, 387, 1188
Cfr13I	GGNCC	5 cut(s)	247, 795, 1167, 1219, 1244
CseI	GACGC	2 cut(s)	409, 729
Csp6I	GTAC	2 cut(s)	783, 1096
CviAII	CATG	3 cut(s)	27, 624, 946
CviQI	GTAC	2 cut(s)	783, 1096
DdeI	CTNAG	6 cut(s)	309, 840, 1005, 1028, 1128, 1200
DinI	GGCGCC	1 cut(s)	1187
DpnI	GATC	3 cut(s)	435, 582, 632
DpnII	GATC	3 cut(s)	433, 580, 630
DraI	TTTAAA	1 cut(s)	1138
Eam1104I	CTCTTC	3 cut(s)	285, 324, 498
EarI	CTCTTC	3 cut(s)	285, 324, 498
EciI	GGCGGA	1 cut(s)	653
Eco130I	CCWWGG	4 cut(s)	105, 623, 806, 924
Eco31I	GGTCTC	1 cut(s)	941
Eco47I	GGWCC	3 cut(s)	795, 1167, 1244
Eco57I	CTGAAG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	1167
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	4 cut(s)	105, 623, 806, 924
EgeI	GGCGCC	1 cut(s)	1187
EheI	GGCGCC	1 cut(s)	1187
ErhI	CCWWGG	4 cut(s)	105, 623, 806, 924
FaeI	CATG	3 cut(s)	30, 627, 949
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	1153
FatI	CATG	3 cut(s)	26, 623, 945
FauI	CCCGC	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	7 cut(s)	191, 269, 338, 1184, 1189, 1197, 1205
FokI	GGATG	6 cut(s)	176, 482, 528, 640, 1066, 1126
Fsp4HI	GCNGC	7 cut(s)	191, 269, 338, 1184, 1189, 1197, 1205
FspBI	CTAG	5 cut(s)	560, 731, 780, 807, 1077
GlaI	GCGC	3 cut(s)	336, 386, 1187
GluI	GCNGC	7 cut(s)	191, 269, 338, 1184, 1189, 1197, 1205
GsuI	CTGGAG	1 cut(s)	923
HaeII	RGCGCY	1 cut(s)	1189
HaeIII	GGCC	3 cut(s)	248, 1022, 1220
HapII	CCGG	1 cut(s)	497
HgaI	GACGC	2 cut(s)	409, 729
HhaI	GCGC	3 cut(s)	337, 387, 1188
Hin1I	GRCGYC	2 cut(s)	5, 1186
Hin1II	CATG	3 cut(s)	30, 627, 949
Hin6I	GCGC	3 cut(s)	335, 385, 1186
HinP1I	GCGC	3 cut(s)	335, 385, 1186
HincII	GTYRAC	3 cut(s)	9, 442, 475
HindII	GTYRAC	3 cut(s)	9, 442, 475
HindIII	AAGCTT	2 cut(s)	52, 536
HinfI	GANTC	3 cut(s)	19, 372, 650
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	4 cut(s)	9, 442, 475, 798
Hpy188I	TCNGA	4 cut(s)	156, 580, 719, 841
Hpy188III	TCNNGA	7 cut(s)	431, 497, 506, 545, 869, 887, 940
Hpy8I	GTNNAC	4 cut(s)	9, 442, 475, 798
HpyAV	CCTTC	4 cut(s)	151, 875, 884, 926
HpyCH4III	ACNGT	7 cut(s)	364, 576, 683, 771, 1042, 1095, 1214
HpyCH4V	TGCA	5 cut(s)	790, 852, 879, 975, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 137, 190
HpyF3I	CTNAG	6 cut(s)	309, 840, 1005, 1028, 1128, 1200
Hsp92I	GRCGYC	2 cut(s)	5, 1186
Hsp92II	CATG	3 cut(s)	30, 627, 949
HspAI	GCGC	3 cut(s)	335, 385, 1186
KasI	GGCGCC	1 cut(s)	1185
KflI	GGGWCCC	1 cut(s)	1167
Kpn2I	TCCGGA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	433, 580, 630
Lsp1109I	GCAGC	3 cut(s)	202, 255, 349
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	5 cut(s)	560, 731, 780, 807, 1077
MaeIII	GTNAC	3 cut(s)	256, 421, 859
MalI	GATC	3 cut(s)	435, 582, 632
MboI	GATC	3 cut(s)	433, 580, 630
MboII	GAAGA	4 cut(s)	302, 341, 485, 1065
MflI	RGATCY	2 cut(s)	433, 580
MluCI	AATT	8 cut(s)	150, 223, 501, 594, 740, 831, 874, 953
Mly113I	GGCGCC	1 cut(s)	1186
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	4 cut(s)	346, 595, 668, 969
MroI	TCCGGA	1 cut(s)	496
MseI	TTAA	3 cut(s)	725, 1083, 1137
MspA1I	CMGCKG	1 cut(s)	1204
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	11, 137, 190
NarI	GGCGCC	1 cut(s)	1186
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	3 cut(s)	433, 580, 630
NlaIII	CATG	3 cut(s)	30, 627, 949
NlaIV	GGNNCC	4 cut(s)	1156, 1168, 1169, 1187
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	949
PciI	ACATGT	1 cut(s)	945
PfeI	GAWTC	2 cut(s)	372, 650
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	7 cut(s)	192, 270, 339, 1185, 1190, 1198, 1206
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	1189
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	1167
PscI	ACATGT	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	1167
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	4 cut(s)	1156, 1168, 1169, 1187
PspPI	GGNCC	5 cut(s)	247, 795, 1167, 1219, 1244
PspPPI	RGGWCCY	1 cut(s)	1167
PsuI	RGATCY	2 cut(s)	433, 580
RsaI	GTAC	2 cut(s)	784, 1097
RsaNI	GTAC	2 cut(s)	783, 1096
SalI	GTCGAC	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	725, 1083, 1137
SatI	GCNGC	7 cut(s)	191, 269, 338, 1184, 1189, 1197, 1205
Sau3AI	GATC	3 cut(s)	433, 580, 630
Sau96I	GGNCC	5 cut(s)	247, 795, 1167, 1219, 1244
ScaI	AGTACT	2 cut(s)	784, 1097
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	2 cut(s)	682, 1091
SfoI	GGCGCC	1 cut(s)	1187
SinI	GGWCC	3 cut(s)	795, 1167, 1244
SmlI	CTYRAG	2 cut(s)	272, 429
SmoI	CTYRAG	2 cut(s)	272, 429
Sse9I	AATT	8 cut(s)	150, 223, 501, 594, 740, 831, 874, 953
SsiI	CCGC	6 cut(s)	319, 638, 1183, 1189, 1196, 1204
SspDI	GGCGCC	1 cut(s)	1185
SspMI	CTAG	5 cut(s)	560, 731, 780, 807, 1077
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	4 cut(s)	105, 623, 806, 924
TaaI	ACNGT	7 cut(s)	364, 576, 683, 771, 1042, 1095, 1214
TaqI	TCGA	3 cut(s)	17, 142, 474
TasI	AATT	8 cut(s)	150, 223, 501, 594, 740, 831, 874, 953
TatI	WGTACW	2 cut(s)	782, 1095
TauI	GCSGC	4 cut(s)	1186, 1191, 1199, 1207
TfiI	GAWTC	2 cut(s)	372, 650
Tru1I	TTAA	3 cut(s)	725, 1083, 1137
Tru9I	TTAA	3 cut(s)	725, 1083, 1137
TscAI	CASTG	1 cut(s)	1198
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	3 cut(s)	190, 268, 337
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	6 cut(s)	296, 530, 663, 703, 824, 1130
TspRI	CASTG	1 cut(s)	1198
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	3 cut(s)	795, 1167, 1244
XapI	RAATTY	4 cut(s)	223, 501, 740, 831
XceI	RCATGY	1 cut(s)	949
XmaJI	CCTAGG	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	5 cut(s)	560, 731, 780, 807, 1077
ZrmI	AGTACT	2 cut(s)	784, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.