Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005086.1

Orthogroup ID

OG0015486

Physical Location & Seq

Genomic Coordinates Forward (+)

8952 .. 15945

Gene Structure 6994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005086.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atggcgtcaactgcttcaactctatcatggagttcttcctcattgcttcaaagctttacaggaaacataaaccaagcaactaaaatagcagacagaggaacagccttggtcgttatcgctcaaaagaaagccaagaaagctcgaacgataattctgaaggaggatgtagctgacctgggaaagcaagggcagcttgttagcgtgaaagctggttattacaggaattttctgcttccaacaggaaaggcccagattgttactcctgtgctgctcaaggaaatgaaaatggaagaggaaaggattgaggctgagaaaaagcgggtaaaagaagaggcacagcaacttgctcttatatttgaaactgttggaggattcaaggtgaagcgcaaaggtggaaaaggaaagctgatttttggaagcgtcacacctcaagatcttgttgacattatcaaggcacagcttcaaagggatgtcgacaagcgaatagtatctcttccagaaattcgtgagattggagaatatattgctgaactaaagcttcatccagaagtgagtgctaaagtacggagcttttggaacatctatgctactgaggtttataatgtggttttacatgcttttcagaattgcattattccagaaggaataaaccacaccatcatcactctaatccccaaggtggaaggtccccagaacatgtctcaatttagacccatcagcttatgcaagattaatttaggtatcttacaggctgaagattacggtctcttatggttcggcgacgccgcagtgcggctcaggaaaggagcccaagaactcgagtgcccaaaacttgattttgaattcgggtcagatttggatccacattttggacccgagtcgttctcaattccgaatcttggatatgagacaactgctcattttgatatgttattgttcctggttcttgggagttcgtttgctaattttcgagtttctgataccatcggttactttcgaactcctggggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

337

Amino Acids

37.54

Weight (kDa)

8.56

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44890
fragaria_vesca	FvH4_3g30600
malus_domestica	MD03G1128600.v1.1 MD11G1148800.v1.1
prunus_persica	Prupe.6G113200_v2.0.a1
pyrus_communis	pycom11g12170
rosa_chinensis	RchiOBHm_Chr5g0056671
rosa_laevigata	RLG00000035119
rosa_multiflora	Rmu_sc0005086.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023680
rosa_rugosa	Rorug05G0301200
rosa_samantha	Rh5AG371500 Rh5BG383400 Rh5CG406500 Rh5DG396400
rosa_wichuraiana	Rw5G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	3 cut(s)	319, 786, 793
AclWI	GGATC	2 cut(s)	854, 867
AcsI	RAATTY	3 cut(s)	223, 501, 842
AcuI	CTGAAG	2 cut(s)	176, 774
AcyI	GRCGYC	2 cut(s)	5, 783
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	4 cut(s)	679, 792, 869, 899
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	6 cut(s)	18, 50, 359, 376, 464, 842
AjnI	CCWGG	3 cut(s)	174, 939, 1003
Alw26I	GTCTC	3 cut(s)	705, 770, 902
AlwI	GGATC	2 cut(s)	854, 867
Ama87I	CYCGRG	2 cut(s)	818, 875
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	190, 268
ApoI	RAATTY	3 cut(s)	223, 501, 842
AseI	ATTAAT	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	247, 686, 872
AsuHPI	GGTGA	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	997
AvaI	CYCGRG	2 cut(s)	818, 875
AvaII	GGWCC	2 cut(s)	686, 872
BaeGI	GKGCMC	1 cut(s)	827
BamHI	GGATCC	1 cut(s)	859
BanII	GRGCYC	1 cut(s)	811
BbvI	GCAGC	2 cut(s)	202, 255
BccI	CCATC	3 cut(s)	665, 722, 992
BciT130I	CCWGG	3 cut(s)	176, 941, 1005
BcoDI	GTCTC	3 cut(s)	705, 770, 902
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	4 cut(s)	191, 269, 786, 794
BlsI	GCNGC	4 cut(s)	192, 270, 787, 795
Bme1390I	CCNGG	3 cut(s)	176, 941, 1005
Bme18I	GGWCC	2 cut(s)	686, 872
BmeT110I	CYCGRG	2 cut(s)	818, 875
BmgT120I	GGNCC	3 cut(s)	247, 686, 872
BmiI	GGNNCC	4 cut(s)	688, 808, 861, 874
BmrFI	CCNGG	3 cut(s)	176, 941, 1005
BoxI	GACNNNNGTC	1 cut(s)	877
BplI	GAGNNNNNCTC	2 cut(s)	869, 901
Bpu10I	CCTNAGC	1 cut(s)	797
Bpu14I	TTCGAA	1 cut(s)	997
BpuEI	CTTGAG	2 cut(s)	257, 414
BsaBI	GATNNNNATC	1 cut(s)	858
BsaHI	GRCGYC	2 cut(s)	5, 783
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	4 cut(s)	105, 175, 675, 1004
Bsc4I	CCNNNNNNNGG	4 cut(s)	679, 792, 869, 899
Bse3DI	GCAATG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	858
BseBI	CCWGG	3 cut(s)	176, 941, 1005
BseDI	CCNNGG	4 cut(s)	105, 175, 675, 1004
BseGI	GGATG	3 cut(s)	169, 475, 541
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	4 cut(s)	679, 792, 869, 899
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	3 cut(s)	300, 582, 811
BseSI	GKGCMC	1 cut(s)	827
BseXI	GCAGC	2 cut(s)	202, 255
BshFI	GGCC	1 cut(s)	248
BsiHKCI	CYCGRG	2 cut(s)	818, 875
BslFI	GGGAC	1 cut(s)	672
BslI	CCNNNNNNNGG	4 cut(s)	679, 792, 869, 899
BsmAI	GTCTC	3 cut(s)	705, 770, 902
BsmFI	GGGAC	1 cut(s)	672
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	770
BsoBI	CYCGRG	2 cut(s)	818, 875
Bsp119I	TTCGAA	1 cut(s)	997
Bsp1286I	GDGCHC	2 cut(s)	811, 827
Bsp143I	GATC	2 cut(s)	433, 859
BspACI	CCGC	3 cut(s)	319, 786, 793
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	3 cut(s)	301, 583, 810
BspLI	GGNNCC	4 cut(s)	688, 808, 861, 874
BspPI	GGATC	2 cut(s)	854, 867
BspT104I	TTCGAA	1 cut(s)	997
BspTNI	GGTCTC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	105, 175, 675, 1004
BssMI	GATC	2 cut(s)	433, 859
BssNI	GRCGYC	2 cut(s)	5, 783
BssT1I	CCWWGG	2 cut(s)	105, 675
Bst2UI	CCWGG	3 cut(s)	176, 941, 1005
Bst4CI	ACNGT	2 cut(s)	364, 764
Bst6I	CTCTTC	3 cut(s)	285, 324, 498
BstACI	GRCGYC	2 cut(s)	5, 783
BstBI	TTCGAA	1 cut(s)	997
BstDEI	CTNAG	3 cut(s)	309, 591, 797
BstF5I	GGATG	3 cut(s)	169, 475, 541
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	2 cut(s)	436, 862
BstMAI	GTCTC	3 cut(s)	705, 770, 902
BstMBI	GATC	2 cut(s)	433, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 137, 190
BstNI	CCWGG	3 cut(s)	176, 941, 1005
BstNSI	RCATGY	2 cut(s)	617, 700
BstPAI	GACNNNNGTC	1 cut(s)	877
BstSCI	CCNGG	3 cut(s)	174, 939, 1003
BstSLI	GKGCMC	1 cut(s)	827
BstV1I	GCAGC	2 cut(s)	202, 255
BstX2I	RGATCY	2 cut(s)	433, 859
BstYI	RGATCY	2 cut(s)	433, 859
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	169, 475, 541
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	1 cut(s)	795
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	3 cut(s)	247, 686, 872
CseI	GACGC	2 cut(s)	409, 791
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	3 cut(s)	27, 614, 697
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	3 cut(s)	309, 591, 797
DpnI	GATC	2 cut(s)	435, 861
DpnII	GATC	2 cut(s)	433, 859
Eam1104I	CTCTTC	3 cut(s)	285, 324, 498
EarI	CTCTTC	3 cut(s)	285, 324, 498
Eco130I	CCWWGG	2 cut(s)	105, 675
Eco24I	GRGCYC	1 cut(s)	811
Eco31I	GGTCTC	1 cut(s)	770
Eco47I	GGWCC	2 cut(s)	686, 872
Eco57I	CTGAAG	2 cut(s)	176, 774
Eco88I	CYCGRG	2 cut(s)	818, 875
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	3 cut(s)	174, 939, 1003
EcoT14I	CCWWGG	2 cut(s)	105, 675
EcoT38I	GRGCYC	1 cut(s)	811
ErhI	CCWWGG	2 cut(s)	105, 675
FaeI	CATG	3 cut(s)	30, 617, 700
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	672
FatI	CATG	3 cut(s)	26, 613, 696
FauI	CCCGC	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	4 cut(s)	191, 269, 786, 794
FokI	GGATG	3 cut(s)	176, 482, 528
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	4 cut(s)	191, 269, 786, 794
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	4 cut(s)	191, 269, 786, 794
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	2 cut(s)	409, 791
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	2 cut(s)	5, 783
Hin1II	CATG	3 cut(s)	30, 617, 700
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	3 cut(s)	9, 442, 475
HindII	GTYRAC	3 cut(s)	9, 442, 475
HindIII	AAGCTT	2 cut(s)	52, 536
HinfI	GANTC	3 cut(s)	372, 878, 895
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	9, 442, 475
Hpy188I	TCNGA	5 cut(s)	156, 624, 853, 894, 979
Hpy188III	TCNNGA	6 cut(s)	431, 497, 506, 545, 638, 799
Hpy8I	GTNNAC	3 cut(s)	9, 442, 475
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	3 cut(s)	151, 635, 677
HpyCH4III	ACNGT	2 cut(s)	364, 764
HpyCH4V	TGCA	2 cut(s)	630, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 137, 190
HpyF3I	CTNAG	3 cut(s)	309, 591, 797
Hsp92I	GRCGYC	2 cut(s)	5, 783
Hsp92II	CATG	3 cut(s)	30, 617, 700
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	433, 859
LmnI	GCTCC	2 cut(s)	567, 806
Lsp1109I	GCAGC	2 cut(s)	202, 255
MaeIII	GTNAC	3 cut(s)	256, 421, 989
MalI	GATC	2 cut(s)	435, 861
MboI	GATC	2 cut(s)	433, 859
MboII	GAAGA	5 cut(s)	27, 302, 341, 485, 767
MflI	RGATCY	2 cut(s)	433, 859
MhlI	GDGCHC	2 cut(s)	811, 827
MluCI	AATT	9 cut(s)	150, 223, 501, 625, 704, 733, 842, 888, 964
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	2 cut(s)	260, 346
MnlI	CCTC	9 cut(s)	49, 89, 154, 286, 298, 325, 362, 438, 586
MseI	TTAA	1 cut(s)	732
MspR9I	CCNGG	3 cut(s)	176, 941, 1005
MvaI	CCWGG	3 cut(s)	176, 941, 1005
MwoI	GCNNNNNNNGC	3 cut(s)	11, 137, 190
NdeII	GATC	2 cut(s)	433, 859
NlaIII	CATG	3 cut(s)	30, 617, 700
NlaIV	GGNNCC	4 cut(s)	688, 808, 861, 874
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	2 cut(s)	617, 700
NspV	TTCGAA	1 cut(s)	997
PaeR7I	CTCGAG	1 cut(s)	818
PciI	ACATGT	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	372, 895
PflMI	CCANNNNNTGG	1 cut(s)	869
PkrI	GCNGC	4 cut(s)	192, 270, 787, 795
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PpuMI	RGGWCCY	1 cut(s)	686
PscI	ACATGT	1 cut(s)	696
PshAI	GACNNNNGTC	1 cut(s)	877
PshBI	ATTAAT	1 cut(s)	732
PsiI	TTATAA	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	686
Psp6I	CCWGG	3 cut(s)	174, 939, 1003
PspGI	CCWGG	3 cut(s)	174, 939, 1003
PspN4I	GGNNCC	4 cut(s)	688, 808, 861, 874
PspPI	GGNCC	3 cut(s)	247, 686, 872
PspPPI	RGGWCCY	1 cut(s)	686
PspXI	VCTCGAGB	1 cut(s)	818
PsuI	RGATCY	2 cut(s)	433, 859
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	4 cut(s)	191, 269, 786, 794
Sau3AI	GATC	2 cut(s)	433, 859
Sau96I	GGNCC	3 cut(s)	247, 686, 872
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	3 cut(s)	176, 941, 1005
SduI	GDGCHC	2 cut(s)	811, 827
Sfr274I	CTCGAG	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	997
SinI	GGWCC	2 cut(s)	686, 872
SlaI	CTCGAG	1 cut(s)	818
SmlI	CTYRAG	3 cut(s)	272, 429, 818
SmoI	CTYRAG	3 cut(s)	272, 429, 818
Sse9I	AATT	9 cut(s)	150, 223, 501, 625, 704, 733, 842, 888, 964
SsiI	CCGC	3 cut(s)	319, 786, 793
StyD4I	CCNGG	3 cut(s)	174, 939, 1003
StyI	CCWWGG	2 cut(s)	105, 675
TaaI	ACNGT	2 cut(s)	364, 764
TaqI	TCGA	5 cut(s)	142, 474, 819, 970, 997
TasI	AATT	9 cut(s)	150, 223, 501, 625, 704, 733, 842, 888, 964
TauI	GCSGC	2 cut(s)	788, 796
TfiI	GAWTC	2 cut(s)	372, 895
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	190, 268
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	296, 530
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	1 cut(s)	795
Van91I	CCANNNNNTGG	1 cut(s)	869
VpaK11BI	GGWCC	2 cut(s)	686, 872
VspI	ATTAAT	1 cut(s)	732
XapI	RAATTY	3 cut(s)	223, 501, 842
XceI	RCATGY	2 cut(s)	617, 700
XhoI	CTCGAG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.