Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015486

Physical Location & Seq

Genomic Coordinates Reverse (-)

14089362 .. 14092477

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1148800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTTCCGCAGCATCGACTCTGTCGTGGAGTTCTTCCTCGTGGCTTCAAAGCTTCGCCGGAAACACAAACGAAGCTACCAAATTGTCAGATAGAAGAACGGGATTGGTGGTTGTCGCTCAGAAGAAAGCAAAGAAGGCTCGAACGATAATTCTAAAGGAGGACATAACTGACCTGGGAAAGAAAGGGCAACTTTTAAGTGTGAAAGCTGGTTATTACAGGAATTATCTGCTACCATTGGGGAAAGCCCAGATTGTCACTCCCCTGCTGCTCAAGGAAATGAAGGTGGAAGAGGAAAGGATTGAGGCAGAGAAAATACGGGTAAAAGAAGAGGCGGAGCAACTTGCTCGTATTTTTGAAACTGTTGGGGGTTTCAAGGTGAAGCGCAAAGGTGGAAAAGGAAAGTTAATTTTTGGAAGCGTCACCCCCCAAGATCTTGTTGACATAATCAAGGCACAACTTTACAGGGAAGTGGACAAGCGCATTGTGTCGCTGCCAGATATTCGAGAGATAGGAGAATATATTGCAGAACTGAAACTTCACCCAGAAGTCACTGCTAAGGTGCGAGTAATCGTTTCTGCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

196

Amino Acids

21.71

Weight (kDa)

9.74

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L9_N	PF01281	50 - 93	9e-16	Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C	PF03948	110 - 193	2.7e-19	Ribosomal protein L9, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44890
fragaria_vesca	FvH4_3g30600
malus_domestica	MD03G1128600.v1.1 MD11G1148800.v1.1
prunus_persica	Prupe.6G113200_v2.0.a1
pyrus_communis	pycom11g12170
rosa_chinensis	RchiOBHm_Chr5g0056671
rosa_laevigata	RLG00000035119
rosa_multiflora	Rmu_sc0005086.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023680
rosa_rugosa	Rorug05G0301200
rosa_samantha	Rh5AG371500 Rh5BG383400 Rh5CG406500 Rh5DG396400
rosa_wichuraiana	Rw5G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 335
AgsI	TTSAA	3 cut(s)	50, 359, 376
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	3 cut(s)	54, 77, 209
AluI	AGCT	3 cut(s)	54, 77, 209
ApeKI	GCWGC	3 cut(s)	11, 268, 493
AspLEI	GCGC	2 cut(s)	387, 483
AsuHPI	GGTGA	3 cut(s)	391, 415, 533
BauI	CACGAG	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	23, 255, 480
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	586
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	12, 269, 494
BlsI	GCNGC	3 cut(s)	13, 270, 495
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	23, 255, 480
BsiSI	CCGG	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	2 cut(s)	9, 335
BspCNI	CTCAG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	2 cut(s)	285, 324
BstDEI	CTNAG	2 cut(s)	120, 558
BstHHI	GCGC	2 cut(s)	387, 483
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 137
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	23, 255, 480
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
CfoI	GCGC	2 cut(s)	387, 483
CseI	GACGC	1 cut(s)	409
CviJI	RGCY	7 cut(s)	5, 46, 54, 77, 140, 209, 248
CviKI_1	RGCY	7 cut(s)	5, 46, 54, 77, 140, 209, 248
DdeI	CTNAG	2 cut(s)	120, 558
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	285, 324
EarI	CTCTTC	2 cut(s)	285, 324
EciI	GGCGGA	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	174
FaiI	YATR	3 cut(s)	167, 446, 522
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
Fnu4HI	GCNGC	3 cut(s)	12, 269, 494
Fsp4HI	GCNGC	3 cut(s)	12, 269, 494
FspBI	CTAG	1 cut(s)	586
GlaI	GCGC	2 cut(s)	386, 482
GluI	GCNGC	3 cut(s)	12, 269, 494
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	387, 483
Hin6I	GCGC	2 cut(s)	385, 481
HinP1I	GCGC	2 cut(s)	385, 481
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	391, 415, 533
Hpy166II	GTNNAC	2 cut(s)	442, 475
Hpy188I	TCNGA	2 cut(s)	91, 123
Hpy188III	TCNNGA	1 cut(s)	506
Hpy8I	GTNNAC	2 cut(s)	442, 475
HpyAV	CCTTC	2 cut(s)	130, 277
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 137
HpyF3I	CTNAG	2 cut(s)	120, 558
HspAI	GCGC	2 cut(s)	385, 481
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	3 cut(s)	23, 255, 480
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	586
MaeIII	GTNAC	3 cut(s)	256, 421, 550
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	5 cut(s)	27, 108, 136, 302, 341
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	4 cut(s)	83, 150, 223, 408
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	49, 154, 286, 298, 325
MseI	TTAA	2 cut(s)	197, 407
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	11, 137
NdeII	GATC	1 cut(s)	433
NmuCI	GTSAC	3 cut(s)	256, 421, 550
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	13, 270, 495
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	197, 407
SatI	GCNGC	3 cut(s)	12, 269, 494
Sau3AI	GATC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	8 cut(s)	56, 79, 177, 211, 288, 381, 394, 564
SfaNI	GCATC	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	83, 150, 223, 408
SsiI	CCGC	2 cut(s)	9, 335
SspMI	CTAG	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	17, 142, 505
TasI	AATT	4 cut(s)	83, 150, 223, 408
Tru1I	TTAA	2 cut(s)	197, 407
Tru9I	TTAA	2 cut(s)	197, 407
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	3 cut(s)	256, 421, 550
TseI	GCWGC	3 cut(s)	11, 268, 493
Tsp45I	GTSAC	3 cut(s)	256, 421, 550
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	559
Tth111I	GACNNNGTC	1 cut(s)	22
XspI	CTAG	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.