Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015486

Physical Location & Seq

Genomic Coordinates Forward (+)

12493669 .. 12496823

Gene Structure 3155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1128600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCATCCGCAGCATCGACTCTGTCATGGAGTTCTTCCTCGTGGCTTCAAAGCTTCGCAGGAAACACAAACGAAGCCACTAAATTGTCAGATAGAAGAACAGGATTGGTGGTTATCGCTCAGAAGAAAGCAAAGAAGGCTCGAACGATAATTCTAAAGGAGGACATAACTGATCTGGGAAAGAAAGGGCAACTTCTAAGCGTGAAAGCTGGTTACTACAGGAATTATCTGCTGCCATTGGGGAAAGCCCAGATTGTCACTCCCCTGCTGCTCAAGGAAATGAAGGTGGAAGAGGAAAGGATTGAGGCAGAGAAAATACGGGTAAAAGAAGAGGCAGAGCAACTTGCTCGGATTTTTGAAACTGTTGGAGGTTTCAAGGTGAAGCGCAAAGGTGGAAAAGGGAAGTTAATTTTTGGAAGTGTGACACCCCAAGATCTCGTTGACATAATCAAGGCACAACTTAACAGGGAAGTGGACAAGCGCATTGTTTCTCTTCCAGAGATTCGAGAGGTAGGAGAATATATTGCAGAACTGAAGCTTCACCCAGAAGTCACTGCTAAAGTGCGAGTCATCGTTTCGGCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

196

Amino Acids

21.67

Weight (kDa)

9.76

Isoelectric Point (pI)

25.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L9_N	PF01281	50 - 93	9e-16	Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C	PF03948	110 - 193	5.6e-20	Ribosomal protein L9, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44890
fragaria_vesca	FvH4_3g30600
malus_domestica	MD03G1128600.v1.1 MD11G1148800.v1.1
prunus_persica	Prupe.6G113200_v2.0.a1
pyrus_communis	pycom11g12170
rosa_chinensis	RchiOBHm_Chr5g0056671
rosa_laevigata	RLG00000035119
rosa_multiflora	Rmu_sc0005086.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023680
rosa_rugosa	Rorug05G0301200
rosa_samantha	Rh5AG371500 Rh5BG383400 Rh5CG406500 Rh5DG396400
rosa_wichuraiana	Rw5G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	50, 359, 376
AluBI	AGCT	3 cut(s)	54, 209, 538
AluI	AGCT	3 cut(s)	54, 209, 538
ApeKI	GCWGC	3 cut(s)	11, 232, 268
AspLEI	GCGC	2 cut(s)	387, 483
AsuHPI	GGTGA	2 cut(s)	391, 533
BauI	CACGAG	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	23, 219, 255
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BfaI	CTAG	1 cut(s)	586
BfmI	CTRYAG	1 cut(s)	217
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	12, 233, 269
BlsI	GCNGC	3 cut(s)	13, 234, 270
BmsI	GCATC	2 cut(s)	14, 23
BpuEI	CTTGAG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	23, 219, 255
Bsp143I	GATC	2 cut(s)	172, 433
BspACI	CCGC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	133
BssMI	GATC	2 cut(s)	172, 433
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	3 cut(s)	285, 324, 498
BstDEI	CTNAG	2 cut(s)	120, 197
BstF5I	GGATG	1 cut(s)	5
BstHHI	GCGC	2 cut(s)	387, 483
BstKTI	GATC	2 cut(s)	175, 436
BstMBI	GATC	2 cut(s)	172, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 137
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	23, 219, 255
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
CfoI	GCGC	2 cut(s)	387, 483
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	8 cut(s)	46, 54, 77, 140, 209, 248, 538, 581
CviKI_1	RGCY	8 cut(s)	46, 54, 77, 140, 209, 248, 538, 581
DdeI	CTNAG	2 cut(s)	120, 197
DpnI	GATC	2 cut(s)	174, 435
DpnII	GATC	2 cut(s)	172, 433
Eam1104I	CTCTTC	3 cut(s)	285, 324, 498
EarI	CTCTTC	3 cut(s)	285, 324, 498
Eco57I	CTGAAG	1 cut(s)	554
FaeI	CATG	1 cut(s)	30
FaiI	YATR	4 cut(s)	28, 167, 446, 522
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	12, 233, 269
Fsp4HI	GCNGC	3 cut(s)	12, 233, 269
FspBI	CTAG	1 cut(s)	586
GlaI	GCGC	2 cut(s)	386, 482
GluI	GCNGC	3 cut(s)	12, 233, 269
HhaI	GCGC	2 cut(s)	387, 483
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	2 cut(s)	385, 481
HinP1I	GCGC	2 cut(s)	385, 481
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	2 cut(s)	52, 536
HinfI	GANTC	3 cut(s)	19, 502, 567
HphI	GGTGA	2 cut(s)	391, 533
Hpy166II	GTNNAC	2 cut(s)	442, 475
Hpy188I	TCNGA	3 cut(s)	91, 123, 351
Hpy188III	TCNNGA	2 cut(s)	497, 506
Hpy8I	GTNNAC	2 cut(s)	442, 475
HpyAV	CCTTC	2 cut(s)	130, 277
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 137
HpyF3I	CTNAG	2 cut(s)	120, 197
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	2 cut(s)	385, 481
Kzo9I	GATC	2 cut(s)	172, 433
Lsp1109I	GCAGC	3 cut(s)	23, 219, 255
LweI	GCATC	2 cut(s)	14, 23
MaeI	CTAG	1 cut(s)	586
MaeIII	GTNAC	4 cut(s)	212, 256, 421, 550
MalI	GATC	2 cut(s)	174, 435
MboI	GATC	2 cut(s)	172, 433
MboII	GAAGA	6 cut(s)	27, 108, 136, 302, 341, 485
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	4 cut(s)	83, 150, 223, 408
MlyI	GAGTC	2 cut(s)	13, 576
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	7 cut(s)	49, 154, 286, 298, 325, 362, 502
MseI	TTAA	2 cut(s)	407, 462
MwoI	GCNNNNNNNGC	2 cut(s)	11, 137
NdeII	GATC	2 cut(s)	172, 433
NlaIII	CATG	1 cut(s)	30
NmuCI	GTSAC	3 cut(s)	256, 421, 550
PfeI	GAWTC	1 cut(s)	502
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	13, 234, 270
PleI	GAGTC	2 cut(s)	13, 575
PpsI	GAGTC	2 cut(s)	13, 575
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	407, 462
SatI	GCNGC	3 cut(s)	12, 233, 269
Sau3AI	GATC	2 cut(s)	172, 433
SchI	GAGTC	2 cut(s)	13, 576
SetI	ASST	8 cut(s)	56, 211, 288, 373, 381, 394, 513, 540
SfaNI	GCATC	2 cut(s)	14, 23
SfcI	CTRYAG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	83, 150, 223, 408
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	17, 142, 505
TasI	AATT	4 cut(s)	83, 150, 223, 408
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	407, 462
Tru9I	TTAA	2 cut(s)	407, 462
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	3 cut(s)	256, 421, 550
TseI	GCWGC	3 cut(s)	11, 232, 268
Tsp45I	GTSAC	3 cut(s)	256, 421, 550
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	559
Tth111I	GACNNNGTC	1 cut(s)	22
XspI	CTAG	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.