Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015486

Physical Location & Seq

Genomic Coordinates Forward (+)

63109472 .. 63112835

Gene Structure 3364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG371500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCATTTCAAATATTCAATTACGTTATGGTGGTTATTGTTGTTGGGGCAGATAATTCTGAAGGAGGATGTAGCTGACCTGGGAAAGCAAGGGCAGCTTGTTAGCGTGAAAGCTGGTTATTACAGGAATTTTCTGCTTCCAACAGGAAAGGCCCAGATTGTTACTCCTGTGCTGCTCAAGGAAATGAAAATGGAAGAGGAAAGGATTGAGGCTGAGAAAAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCTCTTATATTTGAAACTGTTGGAGGATTCAAGGTGAAGCGCAAAGGTGGAAAAGGAAAGCTGATTTTTGGAAGCGTCACACCTCAAGATCTTGTTGACATCATCAAGGCACAACTTCAAAGGGATGTCGACAAGCGAATAGTATCTCTTCCAGAAATTCGTGAGATTGGAGAATATATTGCTGAACTAAAGCTTCATCCAGAAGTGAGTGCTAAAGTACGGGTGATTGTTTCTGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

163

Amino Acids

18.48

Weight (kDa)

9.44

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L9_N	PF01281	17 - 61	7.5e-18	Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C	PF03948	78 - 161	2.4e-19	Ribosomal protein L9, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44890
fragaria_vesca	FvH4_3g30600
malus_domestica	MD03G1128600.v1.1 MD11G1148800.v1.1
prunus_persica	Prupe.6G113200_v2.0.a1
pyrus_communis	pycom11g12170
rosa_chinensis	RchiOBHm_Chr5g0056671
rosa_laevigata	RLG00000035119
rosa_multiflora	Rmu_sc0005086.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023680
rosa_rugosa	Rorug05G0301200
rosa_samantha	Rh5AG371500 Rh5BG383400 Rh5CG406500 Rh5DG396400
rosa_wichuraiana	Rw5G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	1 cut(s)	223
AcsI	RAATTY	2 cut(s)	127, 405
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	468
AgsI	TTSAA	5 cut(s)	10, 18, 263, 280, 368
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	5 cut(s)	74, 97, 113, 310, 442
AluI	AGCT	5 cut(s)	74, 97, 113, 310, 442
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	94, 172
ApoI	RAATTY	2 cut(s)	127, 405
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	295, 484
BbvI	GCAGC	2 cut(s)	106, 159
BciT130I	CCWGG	1 cut(s)	80
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	2 cut(s)	95, 173
BlsI	GCNGC	2 cut(s)	96, 174
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	80
BpuEI	CTTGAG	2 cut(s)	161, 318
BsaJI	CCNNGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	3 cut(s)	73, 379, 445
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	106, 159
BshFI	GGCC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	3 cut(s)	189, 228, 402
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	3 cut(s)	73, 379, 445
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	106, 159
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	73, 379, 445
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	467
CviJI	RGCY	7 cut(s)	74, 97, 113, 152, 212, 310, 442
CviKI_1	RGCY	7 cut(s)	74, 97, 113, 152, 212, 310, 442
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	189, 228, 402
EarI	CTCTTC	3 cut(s)	189, 228, 402
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	3 cut(s)	28, 257, 426
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FauI	CCCGC	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	95, 173
FokI	GGATG	3 cut(s)	80, 386, 432
Fsp4HI	GCNGC	2 cut(s)	95, 173
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	95, 173
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	2 cut(s)	346, 379
HindII	GTYRAC	2 cut(s)	346, 379
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	1 cut(s)	276
HphI	GGTGA	2 cut(s)	295, 484
Hpy166II	GTNNAC	2 cut(s)	346, 379
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	4 cut(s)	335, 401, 410, 449
Hpy8I	GTNNAC	2 cut(s)	346, 379
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	23
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	65, 92, 99, 109, 129, 167, 180, 414, 462
Lsp1109I	GCAGC	2 cut(s)	106, 159
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	160, 325
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	206, 245, 389
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	5 cut(s)	18, 54, 127, 405, 487
MmeI	TCCRAC	2 cut(s)	164, 250
MnlI	CCTC	6 cut(s)	58, 190, 202, 229, 266, 342
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	96, 174
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
SalI	GTCGAC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	2 cut(s)	95, 173
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	176, 333
SmoI	CTYRAG	2 cut(s)	176, 333
Sse9I	AATT	5 cut(s)	18, 54, 127, 405, 487
SsiI	CCGC	1 cut(s)	223
SspI	AATATT	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	378
TasI	AATT	5 cut(s)	18, 54, 127, 405, 487
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	94, 172
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	200, 434
XapI	RAATTY	2 cut(s)	127, 405
XmiI	GTMKAC	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.