Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015486

Physical Location & Seq

Genomic Coordinates Forward (+)

34985543 .. 34986957

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0301200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCATGCAATGTGGGTATCACTGAAGGAGAATGTCAAGTGTGGAAGCAAGCTTGCAGATGTTATTGGCTTGCCAGAAAGATGTGACAGAAGAAGTAAGAACTCTGGAAAAGCGAGTTTGGATGGTGAACTTGTACTTGCTCATGGCAAAGAGACCCCATTCCGGGAACTGATATGCCGTTCAAGCTACACACAGGCACAGCTCTTTGAGCTTAAGAACGGAGACCCATCAAGGAACATCATTGAGATGATTGTTCGAAAAGCATCAATGAATCCTTCAAAGCCATCAGGCAGGATCAAAAGTGTCTTGAGGGTGAAGAACTCCATAGAAACACTTGAAAGGTTTGAGAAGTACAGAGAGAAGGTAAAGAAGATGGCCAAAGAGAGATACATGAGGCACCCAAGAAGCACAGTAGATGGAAATGAGCTGATGAGATTCTATGGCACAACAATGACCTGTTGCAATGGAGAGTCAAGGAGAGAGCCCGAGCTTTGTAATGGTCCAACTTGTCGAGTTTGCAGGTTAATTAAGTCGAACTTTGACACAGAATATATATTGAAGAATGGGATTCAGTTGAGTACAAGTAGTGAAAACACCATTGCCGTTACAAGGGCAACCAAGGCAAAGAGGGCTGTAATAGTTTGCAGGACAATTGCAGGGAGCATTATTAATGCGGATGACAAGGAATATGACGAGTCTGATTCAATTGGAAACCGAAATTTGCATTCCACCACCACAGAATATCTATTAGTGCAGAATCCCAGTGCTGTACTTCCCTGTTTTGTGATAGTTTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000311 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

266

Amino Acids

30.05

Weight (kDa)

9.34

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44890
fragaria_vesca	FvH4_3g30600
malus_domestica	MD03G1128600.v1.1 MD11G1148800.v1.1
prunus_persica	Prupe.6G113200_v2.0.a1
pyrus_communis	pycom11g12170
rosa_chinensis	RchiOBHm_Chr5g0056671
rosa_laevigata	RLG00000035119
rosa_multiflora	Rmu_sc0005086.1_g000002
rosa_roxburghii	Rroxscaffold_1G00023680
rosa_rugosa	Rorug05G0301200
rosa_samantha	Rh5AG371500 Rh5BG383400 Rh5CG406500 Rh5DG396400
rosa_wichuraiana	Rw5G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	396
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	4 cut(s)	135, 353, 580, 771
AfiI	CCNNNNNNNGG	3 cut(s)	162, 163, 609
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	6 cut(s)	183, 279, 338, 559, 705, 796
AluBI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
AluI	AGCT	6 cut(s)	52, 186, 202, 211, 427, 490
Alw26I	GTCTC	2 cut(s)	146, 216
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	718
AseI	ATTAAT	1 cut(s)	669
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	137, 325
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	486
BccI	CCATC	5 cut(s)	116, 235, 292, 367, 410
BceAI	ACGGC	2 cut(s)	162, 587
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	146, 216
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	756
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	164
BsaI	GGTCTC	2 cut(s)	146, 216
BsaJI	CCNNGG	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 163, 609
Bse1I	ACTGG	1 cut(s)	762
Bse3DI	GCAATG	3 cut(s)	15, 469, 597
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	2 cut(s)	127, 682
BseLI	CCNNNNNNNGG	3 cut(s)	162, 163, 609
BseMI	GCAATG	3 cut(s)	15, 469, 597
BseNI	ACTGG	1 cut(s)	762
BsgI	GTGCAG	1 cut(s)	773
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	3 cut(s)	162, 163, 609
BsmAI	GTCTC	2 cut(s)	146, 216
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	2 cut(s)	146, 216
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	2 cut(s)	146, 216
BsrDI	GCAATG	3 cut(s)	15, 469, 597
BsrI	ACTGG	1 cut(s)	762
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	618
Bst4CI	ACNGT	1 cut(s)	412
BstAFI	CTTAAG	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	6, 50, 54, 71
BstF5I	GGATG	2 cut(s)	127, 682
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	146, 216
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 208, 620, 629
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	127, 682
BtsIMutI	CAGTG	2 cut(s)	20, 769
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	4 cut(s)	6, 50, 54, 71
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	4 cut(s)	134, 352, 579, 770
CviAII	CATG	3 cut(s)	5, 143, 391
CviQI	GTAC	4 cut(s)	134, 352, 579, 770
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	486
Eco31I	GGTCTC	2 cut(s)	146, 216
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	3 cut(s)	8, 146, 394
FaiI	YATR	9 cut(s)	6, 144, 175, 326, 392, 441, 552, 554, 690
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FatI	CATG	3 cut(s)	4, 142, 390
FokI	GGATG	2 cut(s)	134, 689
FriOI	GRGCYC	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	3 cut(s)	8, 146, 394
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	7 cut(s)	271, 435, 470, 568, 695, 701, 757
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	2 cut(s)	137, 325
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	700
Hpy188III	TCNNGA	2 cut(s)	105, 307
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	19, 285, 355
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	9 cut(s)	4, 8, 56, 462, 519, 645, 656, 724, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 208, 620, 629
Hsp92II	CATG	3 cut(s)	8, 146, 394
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	660
LweI	GCATC	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	83, 604
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	4 cut(s)	102, 328, 382, 571
MfeI	CAATTG	2 cut(s)	651, 705
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	525, 651, 705, 718
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	479, 704
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	3 cut(s)	303, 387, 621
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	213, 524, 528, 669
MslI	CAYNNNNRTG	2 cut(s)	245, 449
Msp20I	TGGCCA	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	2 cut(s)	651, 705
Mva1269I	GAATGC	1 cut(s)	724
MwoI	GCNNNNNNNGC	4 cut(s)	183, 208, 620, 629
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	3 cut(s)	8, 146, 394
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	256
PacI	TTAATTAA	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	5 cut(s)	271, 435, 568, 701, 757
PfoI	TCCNGGA	1 cut(s)	162
PleI	GAGTC	2 cut(s)	478, 703
PpsI	GAGTC	2 cut(s)	478, 703
PshBI	ATTAAT	1 cut(s)	669
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	500
RsaI	GTAC	4 cut(s)	135, 353, 580, 771
RsaNI	GTAC	4 cut(s)	134, 352, 579, 770
RseI	CAYNNNNRTG	2 cut(s)	245, 449
SaqAI	TTAA	4 cut(s)	213, 524, 528, 669
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	2 cut(s)	479, 704
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	245, 449
SmlI	CTYRAG	2 cut(s)	212, 307
SmoI	CTYRAG	2 cut(s)	212, 307
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	525, 651, 705, 718
SsiI	CCGC	1 cut(s)	674
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	256, 511, 533
TasI	AATT	4 cut(s)	525, 651, 705, 718
TatI	WGTACW	4 cut(s)	133, 351, 578, 769
TfiI	GAWTC	5 cut(s)	271, 435, 568, 701, 757
Tru1I	TTAA	4 cut(s)	213, 524, 528, 669
Tru9I	TTAA	4 cut(s)	213, 524, 528, 669
TscAI	CASTG	2 cut(s)	27, 769
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	2 cut(s)	27, 769
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	718
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.