AT3G45600

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010861
Physical Location & Seq
Reverse (-)
16733755 .. 16735951
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45600.2

Sequence Viewer

Length: 858 bp
ATGAGAACAAGCAACCATCTCATAGGTTTAGTCAACTTCCTCACTTTCCTCCTCTCAATACCAATCCTCGGCGGTGGAATATGGTTAAGCAGCCGAGCTAACTCCACCGACTGTTTAAGATTCCTTCAATGGCCTCTCATCGTCATCGGAATCTCAATCATGGTCGTATCTTTAGCTGGATTCGCTGGAGCTTGTTACCGTAACAAGTTCCTTATGTGGCTATACCTAGTAGTCATGCTTCTCATCATCGCTGCTCTTATCGGTTTCATCATCTTCGCTTACGCGGTTACAGATAAAGGATCCGGTCGAACCGTACTTAACCGGGGTTATCTTGACTATTATCTTGAAGATTACTCTGGTTGGTTGAAAGATCGAGTTTCTGATGATAGCTATTGGGGTAAAATTAGTTCTTGTCTTAGAGATTCTGGTGCTTGTAGAAAGATTGGAAGAAATTTTAATGGTGTACCTGAAACTGCTGATATGTTCTTCCTTAGAAGACTTAGCCCTGTTGAGTCCGGTTGTTGCAAGCCACCAACAGATTGCGGTTTTTCATATGTGAATGAGACCGGATGGGACACGAGAGGAGGGATGATAGGACCGAACCAGGACTGTATGGTGTGGAGCAACGACCAGAGCATGCTCTGTTATCAGTGTAGTTCTTGTAAAGCTGGTGTTCTTGGGAGTTTGAAGAAGAGTTGGAGAAAAGTATCGGTGATCAACATTGTGGTACTTATCATTCTAGTTATCTTTTACGTTATCGCTTATGCAGCTTATAGGAATGTCAAGAGGATCGATAACGATGAACCGGCTGGTGAAGCTAGGATGACAAAATCACATCCTAGTCATTTCCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

285

Amino Acids

31.89

Weight (kDa)

8.93

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 5 - 140 5.1e-27 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 284
AciI CCGC 3 cut(s) 72, 284, 543
AclWI GGATC 3 cut(s) 294, 307, 797
AcsI RAATTY 1 cut(s) 451
AfaI GTAC 3 cut(s) 315, 465, 729
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 4 cut(s) 128, 347, 367, 688
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 7 cut(s) 98, 176, 191, 390, 668, 770, 818
AluI AGCT 7 cut(s) 98, 176, 191, 390, 668, 770, 818
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 3 cut(s) 294, 307, 797
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 90, 251, 767
ApoI RAATTY 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 596
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 724, 824
AvaII GGWCC 1 cut(s) 596
BamHI GGATCC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BauI CACGAG 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 3 cut(s) 102, 238, 779
BccI CCATC 2 cut(s) 24, 564
BciT130I CCWGG 1 cut(s) 605
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 4 cut(s) 227, 740, 819, 840
BisI GCNGC 3 cut(s) 91, 252, 768
BlsI GCNGC 3 cut(s) 92, 253, 769
Bme1390I CCNGG 2 cut(s) 323, 605
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 323, 605
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 792
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 67, 322
BsaWI WCCGGW 3 cut(s) 302, 515, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 805
BseBI CCWGG 1 cut(s) 605
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 2 cut(s) 67, 322
BseGI GGATG 4 cut(s) 575, 594, 828, 835
BseLI CCNNNNNNNGG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 41, 597
BseXI GCAGC 3 cut(s) 102, 238, 779
Bsh1236I CGCG 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 792
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 5 cut(s) 303, 322, 516, 567, 806
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 587
BsnI GGCC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 557
Bsp143I GATC 4 cut(s) 299, 370, 714, 789
BspACI CCGC 3 cut(s) 72, 284, 543
BspANI GGCC 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 792
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 3 cut(s) 294, 307, 797
BspTNI GGTCTC 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 805
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 2 cut(s) 67, 322
BssMI GATC 4 cut(s) 299, 370, 714, 789
BssSI CACGAG 1 cut(s) 577
Bst2BI CACGAG 1 cut(s) 577
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 4 cut(s) 113, 200, 313, 611
Bst6I CTCTTC 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 527, 638
BstDEI CTNAG 3 cut(s) 416, 491, 500
BstF5I GGATG 4 cut(s) 575, 594, 828, 835
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 4 cut(s) 302, 373, 717, 792
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 4 cut(s) 299, 370, 714, 789
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 182, 767, 815
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 2 cut(s) 321, 603
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 3 cut(s) 102, 238, 779
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 4 cut(s) 575, 594, 828, 835
BtsIMutI CAGTG 1 cut(s) 656
Cac8I GCNNGC 2 cut(s) 527, 638
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 1 cut(s) 596
ClaI ATCGAT 1 cut(s) 792
Csp6I GTAC 3 cut(s) 314, 464, 728
CviAII CATG 3 cut(s) 160, 235, 637
CviQI GTAC 3 cut(s) 314, 464, 728
DdeI CTNAG 3 cut(s) 416, 491, 500
DpnI GATC 4 cut(s) 301, 372, 716, 791
DpnII GATC 4 cut(s) 299, 370, 714, 789
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 163, 238, 640
FaqI GGGAC 1 cut(s) 587
FatI CATG 3 cut(s) 159, 234, 636
FauNDI CATATG 1 cut(s) 553
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 3 cut(s) 91, 252, 768
FokI GGATG 4 cut(s) 582, 601, 822, 835
Fsp4HI GCNGC 3 cut(s) 91, 252, 768
FspBI CTAG 4 cut(s) 227, 740, 819, 840
GluI GCNGC 3 cut(s) 91, 252, 768
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 1 cut(s) 133
HapII CCGG 5 cut(s) 303, 322, 516, 567, 806
Hin1II CATG 3 cut(s) 163, 238, 640
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 5 cut(s) 120, 150, 180, 422, 512
HpaII CCGG 5 cut(s) 303, 322, 516, 567, 806
HphI GGTGA 2 cut(s) 724, 824
Hpy166II GTNNAC 2 cut(s) 34, 464
Hpy188I TCNGA 2 cut(s) 149, 382
Hpy188III TCNNGA 3 cut(s) 332, 344, 784
Hpy8I GTNNAC 2 cut(s) 34, 464
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 4 cut(s) 113, 200, 313, 611
HpyCH4IV ACGT 1 cut(s) 753
HpyCH4V TGCA 2 cut(s) 525, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 767, 815
HpyF3I CTNAG 3 cut(s) 416, 491, 500
HpySE526I ACGT 1 cut(s) 753
Hsp92II CATG 3 cut(s) 163, 238, 640
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 4 cut(s) 299, 370, 714, 789
LmnI GCTCC 2 cut(s) 188, 621
Lsp1109I GCAGC 3 cut(s) 102, 238, 779
MaeI CTAG 4 cut(s) 227, 740, 819, 840
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 3 cut(s) 194, 200, 286
MalI GATC 4 cut(s) 301, 372, 716, 791
MboI GATC 4 cut(s) 299, 370, 714, 789
MboII GAAGA 7 cut(s) 265, 359, 459, 478, 507, 700, 703
MflI RGATCY 1 cut(s) 299
MluCI AATT 2 cut(s) 402, 451
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 8 cut(s) 50, 59, 62, 77, 144, 575, 578, 780
MseI TTAA 4 cut(s) 86, 116, 318, 456
MspI CCGG 5 cut(s) 303, 322, 516, 567, 806
MspR9I CCNGG 2 cut(s) 323, 605
MvaI CCWGG 1 cut(s) 605
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 182, 767, 815
NciI CCSGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 553
NdeII GATC 4 cut(s) 299, 370, 714, 789
NlaIII CATG 3 cut(s) 163, 238, 640
NlaIV GGNNCC 1 cut(s) 301
NmeAIII GCCGAG 2 cut(s) 48, 119
NspI RCATGY 1 cut(s) 640
PaeI GCATGC 1 cut(s) 640
PfeI GAWTC 4 cut(s) 120, 150, 180, 422
PkrI GCNGC 3 cut(s) 92, 253, 769
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 596
PsrI GAACNNNNNNTAC 2 cut(s) 391, 423
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 3 cut(s) 315, 465, 729
RsaNI GTAC 3 cut(s) 314, 464, 728
SaqAI TTAA 4 cut(s) 86, 116, 318, 456
SatI GCNGC 3 cut(s) 91, 252, 768
Sau3AI GATC 4 cut(s) 299, 370, 714, 789
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 2 cut(s) 323, 605
SinI GGWCC 1 cut(s) 596
SphI GCATGC 1 cut(s) 640
Sse9I AATT 2 cut(s) 402, 451
SsiI CCGC 3 cut(s) 72, 284, 543
SspMI CTAG 4 cut(s) 227, 740, 819, 840
StyD4I CCNGG 2 cut(s) 321, 603
TaaI ACNGT 4 cut(s) 113, 200, 313, 611
TaiI ACGT 1 cut(s) 756
TaqI TCGA 3 cut(s) 307, 373, 792
TaqII GACCGA 1 cut(s) 613
TasI AATT 2 cut(s) 402, 451
TfiI GAWTC 4 cut(s) 120, 150, 180, 422
Tru1I TTAA 4 cut(s) 86, 116, 318, 456
Tru9I TTAA 4 cut(s) 86, 116, 318, 456
TscAI CASTG 1 cut(s) 656
TseI GCWGC 3 cut(s) 90, 251, 767
TspDTI ATGAA 3 cut(s) 256, 540, 816
TspRI CASTG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 1 cut(s) 451
XceI RCATGY 1 cut(s) 640
XspI CTAG 4 cut(s) 227, 740, 819, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.