Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010861

Physical Location & Seq

Genomic Coordinates Forward (+)

6409545 .. 6412759

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G092900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGGTTCAGCAACCACTTGATTGGGCTACTAAATTTCGCTACTTTCCTCCTCTCAATCCCAATCCTTGGAGGGGGCATATGGCTGAGCAGCAGAGCCAACAACACAGACTGCCTCAAGTTCCTCCAATGGCCGCTCATCATCATCGGGGTCTCGATCATGGTGGTTTCCCTAGCTGGGTTTGCAGGAGCCTGCTACAGGAACACTTTCCTCATGTGGGTTTACCTGTTCGTCATGTTCTTCATCATAGCAGCTCTGATTGGCTTCATCATCTTCGCATATGCTGTCACAGACAAAGGATCAGGCAGGCCTGTGACGAACAGGGCATATGTGGAATATTATCTGGGGGACTATTCCGGCTGGCTGGAGGAGCATGTAGCTAAGGACAGCAACTGGAGAAAGATTGCCTCTTGTGTTAGAGACTCCAAGGTTTGCCAGAAGATGGGGAGGACTGTGAGTGGTGTGCCCCAGACTGCTGACATGTTTTACAACAGAAAGCTCAGCTCTGTTCAGTCTGGCTGCTGCAAGCCCCCTACAGAATGTGGCTATACTTATGTGAATGAGACGACTTGGGAAACTGGAGGAGGTATGATGGGGACCAATCCTGACTGCGCACTGTGGAACAACGACCAACGGCAACTATGCTATTCCTGTAACTCTTGCAAAGCTGGTGTTCTGGCCAGCCTTAAGAAGAGCTGGAGGAAGGTCTCCGTGATCAACATTGTTGTATTAATCATCCTAGTTATCTTCTATGTGATTGGCTGTGCAGCATTCCGAAACAATCGTCGGATTGACAACGATGAACCCTATGGGGAGGCTCGGATGACAAAATCACAACCTAGTGCCTTCCAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

286

Amino Acids

31.9

Weight (kDa)

9.05

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45600
fragaria_vesca	FvH4_3g33630
malus_domestica	MD03G1110300.v1.1 MD11G1123600.v1.1 MD11G1124400.v1.1
prunus_persica	Prupe.6G092900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0061051
rosa_laevigata	RLG00000035424
rosa_multiflora	Rmu_sc0000640.1_g000001 Rmu_sc0004955.1_g000003
rosa_roxburghii	Rroxscaffold_1G00019600
rosa_rugosa	Rorug05G0336500 Rorug05G0336500 Rorug05G0336500 Rorug05G0336500
rosa_samantha	Rh5AG398600 Rh5BG411500 Rh5CG436400 Rh5DG425900
rosa_wichuraiana	Rw5G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	613
AccB7I	CCANNNNNTGG	2 cut(s)	68, 442
AccBSI	CCGCTC	1 cut(s)	136
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	2 cut(s)	131, 678
AcsI	RAATTY	1 cut(s)	34
AfiI	CCNNNNNNNGG	6 cut(s)	68, 73, 177, 198, 217, 442
AflII	CTTAAG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	480
AluBI	AGCT	7 cut(s)	176, 254, 380, 499, 504, 668, 696
AluI	AGCT	7 cut(s)	176, 254, 380, 499, 504, 668, 696
Alw26I	GTCTC	4 cut(s)	157, 414, 557, 712
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	393
AoxI	GGCC	3 cut(s)	131, 308, 678
ApeKI	GCWGC	5 cut(s)	90, 251, 519, 522, 767
ApoI	RAATTY	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
AseI	ATTAAT	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	597
BaeGI	GKGCMC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	680
BbvI	GCAGC	5 cut(s)	102, 263, 506, 509, 779
BccI	CCATC	2 cut(s)	436, 586
BceAI	ACGGC	1 cut(s)	650
BclI	TGATCA	1 cut(s)	714
BcoDI	GTCTC	4 cut(s)	157, 414, 557, 712
BfaI	CTAG	4 cut(s)	173, 740, 840, 856
BfmI	CTRYAG	2 cut(s)	196, 534
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	6 cut(s)	91, 134, 252, 520, 523, 768
BlpI	GCTNAGC	2 cut(s)	86, 500
BlsI	GCNGC	6 cut(s)	92, 135, 253, 521, 524, 769
Bme18I	GGWCC	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	597
BmiI	GGNNCC	2 cut(s)	190, 598
BpmI	CTGGAG	4 cut(s)	386, 415, 600, 718
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	2 cut(s)	86, 500
BpuEI	CTTGAG	1 cut(s)	101
BsaI	GGTCTC	2 cut(s)	157, 712
BsaJI	CCNNGG	2 cut(s)	67, 426
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 73, 177, 198, 217, 442
Bse1I	ACTGG	2 cut(s)	398, 583
BseDI	CCNNGG	2 cut(s)	67, 426
BseGI	GGATG	2 cut(s)	735, 828
BseLI	CCNNNNNNNGG	6 cut(s)	68, 73, 177, 198, 217, 442
BseMII	CTCAG	2 cut(s)	77, 514
BseNI	ACTGG	2 cut(s)	398, 583
BseRI	GAGGAG	3 cut(s)	41, 383, 597
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	5 cut(s)	102, 263, 506, 509, 779
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	3 cut(s)	133, 310, 680
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	2 cut(s)	362, 610
BslI	CCNNNNNNNGG	6 cut(s)	68, 73, 177, 198, 217, 442
BsmAI	GTCTC	4 cut(s)	157, 414, 557, 712
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	2 cut(s)	362, 610
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	3 cut(s)	133, 310, 680
Bso31I	GGTCTC	2 cut(s)	157, 712
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	156, 299, 714
Bsp1720I	GCTNAGC	2 cut(s)	86, 500
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	3 cut(s)	133, 310, 680
BspCNI	CTCAG	2 cut(s)	78, 513
BspLI	GGNNCC	2 cut(s)	190, 598
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	686
BspTNI	GGTCTC	2 cut(s)	157, 712
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	398, 583
BssECI	CCNNGG	2 cut(s)	67, 426
BssMI	GATC	3 cut(s)	156, 299, 714
BssT1I	CCWWGG	2 cut(s)	67, 426
Bst4CI	ACNGT	2 cut(s)	454, 618
Bst6I	CTCTTC	1 cut(s)	686
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	5 cut(s)	193, 308, 362, 527, 682
BstDEI	CTNAG	3 cut(s)	86, 381, 500
BstENI	CCTNNNNNAGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	735, 828
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	3 cut(s)	159, 302, 717
BstMAI	GTCTC	4 cut(s)	157, 414, 557, 712
BstMBI	GATC	3 cut(s)	156, 299, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 370
BstNSI	RCATGY	2 cut(s)	377, 484
BstSFI	CTRYAG	2 cut(s)	196, 534
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	5 cut(s)	102, 263, 506, 509, 779
BstXI	CCANNNNNNTGG	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	133, 310, 680
BtsCI	GGATG	2 cut(s)	735, 828
BtsIMutI	CAGTG	1 cut(s)	614
Cac8I	GCNNGC	5 cut(s)	193, 308, 362, 527, 682
CaiI	CAGNNNCTG	1 cut(s)	393
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	597
CviAII	CATG	5 cut(s)	160, 214, 235, 374, 481
DdeI	CTNAG	3 cut(s)	86, 381, 500
DpnI	GATC	3 cut(s)	158, 301, 716
DpnII	GATC	3 cut(s)	156, 299, 714
EaeI	YGGCCR	2 cut(s)	131, 678
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
Eco130I	CCWWGG	2 cut(s)	67, 426
Eco147I	AGGCCT	1 cut(s)	310
Eco31I	GGTCTC	2 cut(s)	157, 712
Eco47I	GGWCC	1 cut(s)	597
EcoNI	CCTNNNNNAGG	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	67, 426
ErhI	CCWWGG	2 cut(s)	67, 426
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	5 cut(s)	163, 217, 238, 377, 484
FaqI	GGGAC	2 cut(s)	362, 610
FatI	CATG	5 cut(s)	159, 213, 234, 373, 480
FauNDI	CATATG	3 cut(s)	80, 280, 328
FbaI	TGATCA	1 cut(s)	714
Fnu4HI	GCNGC	6 cut(s)	91, 134, 252, 520, 523, 768
FokI	GGATG	2 cut(s)	722, 835
Fsp4HI	GCNGC	6 cut(s)	91, 134, 252, 520, 523, 768
FspBI	CTAG	4 cut(s)	173, 740, 840, 856
FspI	TGCGCA	1 cut(s)	613
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	6 cut(s)	91, 134, 252, 520, 523, 768
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	4 cut(s)	386, 415, 600, 718
HaeIII	GGCC	3 cut(s)	133, 310, 680
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	5 cut(s)	163, 217, 238, 377, 484
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	1 cut(s)	357
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	258, 776, 789, 822
Hpy188III	TCNNGA	2 cut(s)	154, 605
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	789
HpyAV	CCTTC	2 cut(s)	697, 856
HpyCH4III	ACNGT	2 cut(s)	454, 618
HpyCH4V	TGCA	4 cut(s)	185, 525, 663, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 370
HpyF3I	CTNAG	3 cut(s)	86, 381, 500
Hsp92II	CATG	5 cut(s)	163, 217, 238, 377, 484
HspAI	GCGC	1 cut(s)	612
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	3 cut(s)	156, 299, 714
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	2 cut(s)	188, 370
Lsp1109I	GCAGC	5 cut(s)	102, 263, 506, 509, 779
MaeI	CTAG	4 cut(s)	173, 740, 840, 856
MaeIII	GTNAC	3 cut(s)	286, 313, 653
MalI	GATC	3 cut(s)	158, 301, 716
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	3 cut(s)	156, 299, 714
MboII	GAAGA	5 cut(s)	232, 265, 451, 703, 739
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	767
Mox20I	TGGCCA	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	2 cut(s)	687, 731
Msp20I	TGGCCA	1 cut(s)	680
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	770
MwoI	GCNNNNNNNGC	2 cut(s)	182, 370
NdeI	CATATG	3 cut(s)	80, 280, 328
NdeII	GATC	3 cut(s)	156, 299, 714
NlaIII	CATG	5 cut(s)	163, 217, 238, 377, 484
NlaIV	GGNNCC	2 cut(s)	190, 598
NmuCI	GTSAC	2 cut(s)	286, 313
NsbI	TGCGCA	1 cut(s)	613
NspI	RCATGY	2 cut(s)	377, 484
PceI	AGGCCT	1 cut(s)	310
PciI	ACATGT	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	686
PctI	GAATGC	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	206
PflMI	CCANNNNNTGG	2 cut(s)	68, 442
PkrI	GCNGC	6 cut(s)	92, 135, 253, 521, 524, 769
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PscI	ACATGT	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	731
PspFI	CCCAGC	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	190, 598
PspPI	GGNCC	1 cut(s)	597
PstNI	CAGNNNCTG	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	687, 731
SatI	GCNGC	6 cut(s)	91, 134, 252, 520, 523, 768
Sau3AI	GATC	3 cut(s)	156, 299, 714
Sau96I	GGNCC	1 cut(s)	597
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	468
SfcI	CTRYAG	2 cut(s)	196, 534
SinI	GGWCC	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	116, 686
SmoI	CTYRAG	2 cut(s)	116, 686
Sse9I	AATT	1 cut(s)	34
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	134
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	4 cut(s)	173, 740, 840, 856
StuI	AGGCCT	1 cut(s)	310
StyI	CCWWGG	2 cut(s)	67, 426
TaaI	ACNGT	2 cut(s)	454, 618
TaqI	TCGA	1 cut(s)	155
TasI	AATT	1 cut(s)	34
TauI	GCSGC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	687, 731
Tru9I	TTAA	2 cut(s)	687, 731
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	2 cut(s)	286, 313
TseI	GCWGC	5 cut(s)	90, 251, 519, 522, 767
Tsp45I	GTSAC	2 cut(s)	286, 313
TspDTI	ATGAA	3 cut(s)	232, 256, 816
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	1 cut(s)	621
Van91I	CCANNNNNTGG	2 cut(s)	68, 442
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	597
VspI	ATTAAT	1 cut(s)	731
XagI	CCTNNNNNAGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	2 cut(s)	377, 484
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	4 cut(s)	173, 740, 840, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.