FvH4_3g33630

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010861
Physical Location & Seq
Reverse (-)
29142657 .. 29146273
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33630.t1

Sequence Viewer

Length: 858 bp
ATGAGGTCCAGCAACCACTTGATAGGTCTGCTCAACTTCACCACCTTCCTCCTCTCAATCCCTATCCTCGGCGGTGGAATCTGGCTGAGCAGCCGAGCCAACAACACTGACTGCCTCAAGTTCCTCCAATGGCCTCTCATAGTCATCGGAGTCTCCATCATGGTGGTGTCTCTCGCCGGCATCGCCGGAGCTTGTTACCGCAACACTCTCCTCATGTGGGTCTACCTCTTCGTCATGTTCTTCATCATAGCTGCTCTGATCGGCTTCATCATCTTTGCTTACGCCGTCACGGATAAAGGGTCCGGCAGGTCGTTGGTGAACCGGGCTTACAAGGACTACTATCTGGAGGACTACTCCGGCTGGCTGGAGGAGCGTGTAGCTCGTAATAGCTACTGGAGGAAGATTGCTTCCTGTGTGAGAGACTCCAAGGTTTGCAAGAAGATGGACACCAGTGTTAATGGTGTGCCGGAGACTGCTGACATGTTTTACAACAGAAAGCTCAGTTCTGTTCAGTCTGGCTGCTGCAAGCCCCCTACTGAGTGTGGCTATACCTATGTGAACGAGACGGTTTGGACAACTGGAGGAGGCTTGGTGGGAACAAATCCCGACTGTTCTATGTGGAACAATGATCAGCAGGAACTCTGCTATTCCTGTAACTCTTGCAAGGCTGGTGTGCTGGCCAGCATTAGGAAGAGTTGGAGGAAGGTCTCTGTGATTAACATTGTTATATTGATCGTCTTAGTCATCTTCTATGTGATTGGCTGTGCAGCTTTCAGAAACAATCGTCGGATTGACAATGATGAACCATATGGTGAGGCTCGGATGACAAAGGCGCAGCCTAGCCATTTCCACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

286

Amino Acids

32.0

Weight (kDa)

8.96

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 5 - 256 2.2e-38 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 222
AciI CCGC 2 cut(s) 72, 199
AcoI YGGCCR 1 cut(s) 678
AfiI CCNNNNNNNGG 3 cut(s) 68, 217, 687
AflIII ACRYGT 1 cut(s) 480
AluBI AGCT 6 cut(s) 191, 251, 380, 390, 499, 770
AluI AGCT 6 cut(s) 191, 251, 380, 390, 499, 770
Alw26I GTCTC 6 cut(s) 157, 174, 414, 464, 557, 712
AoxI GGCC 2 cut(s) 131, 678
ApeKI GCWGC 6 cut(s) 90, 251, 519, 522, 767, 835
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 2 cut(s) 6, 300
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 3 cut(s) 31, 328, 824
AvaII GGWCC 2 cut(s) 6, 300
BalI TGGCCA 1 cut(s) 680
BbvI GCAGC 6 cut(s) 102, 238, 506, 509, 779, 847
BccI CCATC 2 cut(s) 164, 436
BceAI ACGGC 1 cut(s) 269
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 6 cut(s) 157, 174, 414, 464, 557, 712
BfaI CTAG 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 6 cut(s) 91, 252, 520, 523, 768, 836
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 6 cut(s) 92, 253, 521, 524, 769, 837
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 2 cut(s) 6, 300
BmgT120I GGNCC 2 cut(s) 6, 300
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpmI CTGGAG 4 cut(s) 365, 386, 415, 600
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 2 cut(s) 67, 426
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 217, 687
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 3 cut(s) 398, 450, 583
BseDI CCNNGG 2 cut(s) 67, 426
BseGI GGATG 1 cut(s) 828
BseLI CCNNNNNNNGG 3 cut(s) 68, 217, 687
BseMII CTCAG 3 cut(s) 77, 514, 528
BseNI ACTGG 3 cut(s) 398, 450, 583
BseRI GAGGAG 4 cut(s) 41, 200, 383, 597
BseXI GCAGC 6 cut(s) 102, 238, 506, 509, 779, 847
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 2 cut(s) 133, 680
BsiSI CCGG 6 cut(s) 177, 186, 303, 322, 357, 467
BslI CCNNNNNNNGG 3 cut(s) 68, 217, 687
BsmAI GTCTC 6 cut(s) 157, 174, 414, 464, 557, 712
BsmBI CGTCTC 1 cut(s) 557
BsnI GGCC 2 cut(s) 133, 680
Bso31I GGTCTC 1 cut(s) 712
Bsp143I GATC 3 cut(s) 258, 628, 732
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 2 cut(s) 72, 199
BspANI GGCC 2 cut(s) 133, 680
BspCNI CTCAG 3 cut(s) 78, 513, 529
BspLI GGNNCC 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 712
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 3 cut(s) 398, 450, 583
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 67, 426
BssMI GATC 3 cut(s) 258, 628, 732
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 568, 611
Bst6I CTCTTC 2 cut(s) 233, 686
BstC8I GCNNGC 5 cut(s) 178, 362, 527, 678, 682
BstDEI CTNAG 4 cut(s) 86, 500, 537, 739
BstF5I GGATG 1 cut(s) 828
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 3 cut(s) 261, 631, 735
BstMAI GTCTC 6 cut(s) 157, 174, 414, 464, 557, 712
BstMBI GATC 3 cut(s) 258, 628, 732
BstMWI GCNNNNNNNGC 2 cut(s) 182, 370
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 6 cut(s) 102, 238, 506, 509, 779, 847
BstXI CCANNNNNNTGG 1 cut(s) 163
BsuRI GGCC 2 cut(s) 133, 680
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 828
BtsIMutI CAGTG 2 cut(s) 105, 457
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 5 cut(s) 178, 362, 527, 678, 682
CfoI GCGC 1 cut(s) 835
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 6, 300
CviAII CATG 4 cut(s) 160, 214, 235, 481
DdeI CTNAG 4 cut(s) 86, 500, 537, 739
DpnI GATC 3 cut(s) 260, 630, 734
DpnII GATC 3 cut(s) 258, 628, 732
EaeI YGGCCR 1 cut(s) 678
Eam1104I CTCTTC 2 cut(s) 233, 686
EarI CTCTTC 2 cut(s) 233, 686
Eco130I CCWWGG 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 712
Eco47I GGWCC 2 cut(s) 6, 300
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 4 cut(s) 163, 217, 238, 484
FatI CATG 4 cut(s) 159, 213, 234, 480
FauNDI CATATG 1 cut(s) 808
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 6 cut(s) 91, 252, 520, 523, 768, 836
FokI GGATG 1 cut(s) 835
Fsp4HI GCNGC 6 cut(s) 91, 252, 520, 523, 768, 836
FspBI CTAG 1 cut(s) 840
GlaI GCGC 1 cut(s) 834
GluI GCNGC 6 cut(s) 91, 252, 520, 523, 768, 836
GsuI CTGGAG 4 cut(s) 365, 386, 415, 600
HaeIII GGCC 2 cut(s) 133, 680
HapII CCGG 6 cut(s) 177, 186, 303, 322, 357, 467
HhaI GCGC 1 cut(s) 835
Hin1II CATG 4 cut(s) 163, 217, 238, 484
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HinfI GANTC 3 cut(s) 78, 150, 422
HpaII CCGG 6 cut(s) 177, 186, 303, 322, 357, 467
HphI GGTGA 3 cut(s) 31, 328, 824
Hpy166II GTNNAC 3 cut(s) 223, 319, 559
Hpy188I TCNGA 5 cut(s) 149, 258, 776, 789, 822
Hpy188III TCNNGA 2 cut(s) 344, 605
Hpy8I GTNNAC 3 cut(s) 223, 319, 559
Hpy99I CGWCG 1 cut(s) 789
HpyAV CCTTC 2 cut(s) 55, 697
HpyCH4III ACNGT 2 cut(s) 568, 611
HpyCH4V TGCA 4 cut(s) 435, 525, 663, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 370
HpyF3I CTNAG 4 cut(s) 86, 500, 537, 739
Hsp92II CATG 4 cut(s) 163, 217, 238, 484
HspAI GCGC 1 cut(s) 833
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 3 cut(s) 258, 628, 732
LmnI GCTCC 2 cut(s) 188, 370
Lsp1109I GCAGC 6 cut(s) 102, 238, 506, 509, 779, 847
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 840
MaeIII GTNAC 3 cut(s) 194, 286, 653
MalI GATC 3 cut(s) 260, 630, 734
MboI GATC 3 cut(s) 258, 628, 732
MboII GAAGA 6 cut(s) 220, 232, 412, 451, 703, 739
MlsI TGGCCA 1 cut(s) 680
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 2 cut(s) 159, 416
MmeI TCCRAC 2 cut(s) 677, 767
Mox20I TGGCCA 1 cut(s) 680
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 680
MseI TTAA 2 cut(s) 456, 717
MslI CAYNNNNRTG 2 cut(s) 161, 164
Msp20I TGGCCA 1 cut(s) 680
MspI CCGG 6 cut(s) 177, 186, 303, 322, 357, 467
MspR9I CCNGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 182, 370
NaeI GCCGGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 808
NdeII GATC 3 cut(s) 258, 628, 732
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 4 cut(s) 163, 217, 238, 484
NlaIV GGNNCC 1 cut(s) 301
NmeAIII GCCGAG 2 cut(s) 48, 119
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 1 cut(s) 484
PciI ACATGT 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 6 cut(s) 92, 253, 521, 524, 769, 837
PleI GAGTC 2 cut(s) 158, 416
PpsI GAGTC 2 cut(s) 158, 416
PscI ACATGT 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 6, 300
PsrI GAACNNNNNNTAC 2 cut(s) 311, 343
RseI CAYNNNNRTG 2 cut(s) 161, 164
SaqAI TTAA 2 cut(s) 456, 717
SatI GCNGC 6 cut(s) 91, 252, 520, 523, 768, 836
Sau3AI GATC 3 cut(s) 258, 628, 732
Sau96I GGNCC 2 cut(s) 6, 300
SchI GAGTC 2 cut(s) 159, 416
ScrFI CCNGG 1 cut(s) 323
SfaNI GCATC 1 cut(s) 189
SinI GGWCC 2 cut(s) 6, 300
SmiMI CAYNNNNRTG 2 cut(s) 161, 164
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 2 cut(s) 72, 199
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 568, 611
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 456, 717
Tru9I TTAA 2 cut(s) 456, 717
TscAI CASTG 2 cut(s) 112, 457
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 6 cut(s) 90, 251, 519, 522, 767, 835
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 232, 256, 816
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 112, 457
VpaK11BI GGWCC 2 cut(s) 6, 300
XceI RCATGY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.