AT3G45880

(jmjC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009293
Physical Location & Seq
Reverse (-)
16868914 .. 16871609
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45880.2

Sequence Viewer

Length: 1038 bp
ATGGCTAAAGAGATAGAGAATTTATGGAGAGAAGTGAGAGAATTGAGCTTAGGAACTAAAATCGATCGTTTTGATTCTCAACCGTCTCCGGTGAAGTTTCTCCGAAACTACGTGTCTCAGAGCAAGCCTTGTGTAATCTCCAAAGCTATTACTCATTGGCCGGCGTTAAAACTCTGGTCAGATCCGGCTTACCTCACCGGAGCTTTGTCAGATGACGTTGTCTCGCTACATCTCACTCCTAACGGCTGCGCAGACGCCGTCACCGGAGATAGTGATCTTTGTTTCGCTTCGGCTCATGTTGAGAAAGTTCTGTTCCCGGAGGCTCTTAAGGTTGTTCAATCGTCGTGTAAAGGACTGAAGGTTGGGTATTTGCAACAGCAAAACGATTGTTTTAGAACGGAGTATTCGACGGTTGCGTTAGACTGCGACGGTGATATTGAGTGGGCTACGGAGGCATTTGGTTGTTCGCCGGAAGCTGTGAACCTTTGGATTGGTACTGATGACTCCGTGACTTCATTTCATAAAGATCACTATGAGAATCTTTACGCTGTTGTTTCAGGGGAGAAACATTTCCTTCTTCTTCCTCCGACTGATGTTCACCGTCTCTATATCGAACAGTATCCGGCAGCTAATTACTCTTACCACCGAGATACTGATGCGTTCAAGCTTGAGGTTGAGGAGCCGGTTAGGCATGTACCTTGGTCTAGTGTTGATCCATACCCTTCGCCAGAGAAGGAAGCAAGCGAGAGATTGAAATTTCCGTTGTTCTTTGATGGCCCGAAGCCGTTTCATTGTACTGTCAAGGCTGGCGAGGTTCTTTACCTGCCAAGCATGTGGTTTCACCATGTTAGTCAAACCCCAGGAGATGGAGGTTATACCATTGCAGTGAACTATTGGTATGACATGCAGTTTGACATCAAGTATGCTTATTTTAACTTCTTGCAATCTTTATTATACAAGTCATCTTCACTCAATCCAGTTCTTTCTTGGAGAGAAGACGAAGATTCAGAATCCAGTGATGCAGAGATTGCTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

345

Amino Acids

39.12

Weight (kDa)

4.88

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 31 - 305 2.5e-78 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 831
AccB7I CCANNNNNTGG 1 cut(s) 866
AclWI GGATC 2 cut(s) 176, 707
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 2 cut(s) 19, 755
AcuI CTGAAG 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 496, 696, 796
AfiI CCNNNNNNNGG 1 cut(s) 866
AflII CTTAAG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 3 cut(s) 338, 664, 754
AjnI CCWGG 1 cut(s) 859
AluBI AGCT 6 cut(s) 48, 146, 203, 476, 629, 667
AluI AGCT 6 cut(s) 48, 146, 203, 476, 629, 667
Alw26I GTCTC 4 cut(s) 90, 120, 226, 608
AlwI GGATC 2 cut(s) 176, 707
AoxI GGCC 2 cut(s) 158, 775
ApeKI GCWGC 2 cut(s) 246, 626
ApoI RAATTY 2 cut(s) 19, 755
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
Asp700I GAANNNNTTC 1 cut(s) 569
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 6 cut(s) 103, 187, 253, 443, 590, 833
BbsI GAAGAC 1 cut(s) 1002
BbvI GCAGC 2 cut(s) 233, 638
BccI CCATC 2 cut(s) 767, 860
BceAI ACGGC 3 cut(s) 242, 259, 769
BciT130I CCWGG 1 cut(s) 861
BciVI GTATCC 1 cut(s) 630
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 4 cut(s) 90, 120, 226, 608
BfaI CTAG 1 cut(s) 705
BfrI CTTAAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 831
BfuI GTATCC 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 688
BisI GCNGC 2 cut(s) 247, 627
BlsI GCNGC 2 cut(s) 248, 628
Bme1390I CCNGG 2 cut(s) 317, 861
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 1 cut(s) 681
BmrFI CCNGG 2 cut(s) 317, 861
BmsI GCATC 2 cut(s) 646, 1009
BpiI GAAGAC 1 cut(s) 1002
Bpu10I CCTNAGC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 698, 859
BsaWI WCCGGW 3 cut(s) 88, 197, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 866
Bse118I RCCGGY 2 cut(s) 160, 682
Bse1I ACTGG 2 cut(s) 977, 1014
Bse3DI GCAATG 1 cut(s) 879
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 861
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 698, 859
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 866
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 977, 1014
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 2 cut(s) 233, 638
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 160, 777
BshVI ATCGAT 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 67
BsiSI CCGG 9 cut(s) 89, 161, 185, 198, 264, 317, 470, 623, 683
BslI CCNNNNNNNGG 1 cut(s) 866
BsmAI GTCTC 4 cut(s) 90, 120, 226, 608
BsmBI CGTCTC 2 cut(s) 90, 608
BsnI GGCC 2 cut(s) 160, 777
Bsp143I GATC 5 cut(s) 64, 181, 274, 526, 712
BspANI GGCC 2 cut(s) 160, 777
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 681
BspMI ACCTGC 1 cut(s) 831
BspPI GGATC 2 cut(s) 176, 707
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 879
BsrFI RCCGGY 2 cut(s) 160, 682
BsrI ACTGG 2 cut(s) 977, 1014
BssAI RCCGGY 2 cut(s) 160, 682
BssECI CCNNGG 2 cut(s) 698, 859
BssMI GATC 5 cut(s) 64, 181, 274, 526, 712
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 698
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 6 cut(s) 84, 412, 431, 602, 618, 799
BstACI GRCGYC 1 cut(s) 255
BstAFI CTTAAG 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 4 cut(s) 125, 162, 742, 808
BstDEI CTNAG 2 cut(s) 49, 117
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 5 cut(s) 67, 184, 277, 529, 715
BstMAI GTCTC 4 cut(s) 90, 120, 226, 608
BstMBI GATC 5 cut(s) 64, 181, 274, 526, 712
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 452, 688, 1028
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 3 cut(s) 695, 835, 907
BstSCI CCNGG 2 cut(s) 315, 859
BstV1I GCAGC 2 cut(s) 233, 638
BstV2I GAAGAC 1 cut(s) 1002
BstX2I RGATCY 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 834
BstYI RGATCY 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 63
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 2 cut(s) 160, 777
BsuTUI ATCGAT 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 2 cut(s) 891, 1021
BveI ACCTGC 1 cut(s) 831
Cac8I GCNNGC 4 cut(s) 125, 162, 742, 808
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 2 cut(s) 160, 682
Cfr13I GGNCC 1 cut(s) 776
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 495, 695, 795
CviAII CATG 5 cut(s) 296, 692, 832, 845, 904
CviQI GTAC 3 cut(s) 495, 695, 795
DdeI CTNAG 2 cut(s) 49, 117
DpnI GATC 5 cut(s) 66, 183, 276, 528, 714
DpnII GATC 5 cut(s) 64, 181, 274, 526, 712
EaeI YGGCCR 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
Esp3I CGTCTC 2 cut(s) 90, 608
FaeI CATG 5 cut(s) 299, 695, 835, 848, 907
FatI CATG 5 cut(s) 295, 691, 831, 844, 903
Fnu4HI GCNGC 2 cut(s) 247, 627
Fsp4HI GCNGC 2 cut(s) 247, 627
FspBI CTAG 1 cut(s) 705
FspI TGCGCA 1 cut(s) 250
GlaI GCGC 1 cut(s) 250
GluI GCNGC 2 cut(s) 247, 627
HaeIII GGCC 2 cut(s) 160, 777
HapII CCGG 9 cut(s) 89, 161, 185, 198, 264, 317, 470, 623, 683
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 5 cut(s) 299, 695, 835, 848, 907
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 5 cut(s) 74, 503, 538, 1004, 1010
HpaII CCGG 9 cut(s) 89, 161, 185, 198, 264, 317, 470, 623, 683
HphI GGTGA 6 cut(s) 103, 187, 253, 443, 590, 833
Hpy166II GTNNAC 3 cut(s) 481, 598, 889
Hpy188I TCNGA 6 cut(s) 104, 120, 181, 211, 588, 1009
Hpy8I GTNNAC 3 cut(s) 481, 598, 889
Hpy99I CGWCG 3 cut(s) 346, 412, 431
HpyAV CCTTC 4 cut(s) 352, 584, 727, 732
HpyCH4III ACNGT 6 cut(s) 84, 412, 431, 602, 618, 799
HpyCH4IV ACGT 2 cut(s) 111, 216
HpyCH4V TGCA 5 cut(s) 373, 884, 907, 943, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 688, 1028
HpyF3I CTNAG 2 cut(s) 49, 117
HpySE526I ACGT 2 cut(s) 111, 216
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 5 cut(s) 299, 695, 835, 848, 907
HspAI GCGC 1 cut(s) 249
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Kzo9I GATC 5 cut(s) 64, 181, 274, 526, 712
LmnI GCTCC 3 cut(s) 200, 679, 1036
Lsp1109I GCAGC 2 cut(s) 233, 638
LweI GCATC 2 cut(s) 646, 1009
MaeI CTAG 1 cut(s) 705
MaeII ACGT 2 cut(s) 111, 216
MaeIII GTNAC 2 cut(s) 259, 508
MalI GATC 5 cut(s) 66, 183, 276, 528, 714
MboI GATC 5 cut(s) 64, 181, 274, 526, 712
MboII GAAGA 5 cut(s) 569, 572, 957, 1007, 1013
MflI RGATCY 1 cut(s) 181
MluCI AATT 4 cut(s) 19, 41, 631, 755
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 611
MnlI CCTC 8 cut(s) 203, 313, 445, 594, 664, 670, 805, 863
MroNI GCCGGC 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 3 cut(s) 167, 327, 933
MslI CAYNNNNRTG 1 cut(s) 884
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 9 cut(s) 89, 161, 185, 198, 264, 317, 470, 623, 683
MspR9I CCNGG 2 cut(s) 317, 861
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 3 cut(s) 452, 688, 1028
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 317
NdeII GATC 5 cut(s) 64, 181, 274, 526, 712
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 5 cut(s) 299, 695, 835, 848, 907
NlaIV GGNNCC 1 cut(s) 681
NmuCI GTSAC 2 cut(s) 259, 508
NsbI TGCGCA 1 cut(s) 250
NspI RCATGY 3 cut(s) 695, 835, 907
PcsI WCGNNNNNNNCGW 2 cut(s) 404, 413
PdiI GCCGGC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 4 cut(s) 74, 538, 1004, 1010
PflFI GACNNNGTC 2 cut(s) 218, 257
PflMI CCANNNNNTGG 1 cut(s) 866
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 2 cut(s) 248, 628
Ple19I CGATCG 1 cut(s) 67
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Ppu21I YACGTR 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 859
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 1 cut(s) 181
PsyI GACNNNGTC 2 cut(s) 218, 257
PvuI CGATCG 1 cut(s) 67
RsaI GTAC 3 cut(s) 496, 696, 796
RsaNI GTAC 3 cut(s) 495, 695, 795
RseI CAYNNNNRTG 1 cut(s) 884
SaqAI TTAA 3 cut(s) 167, 327, 933
SatI GCNGC 2 cut(s) 247, 627
Sau3AI GATC 5 cut(s) 64, 181, 274, 526, 712
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 2 cut(s) 317, 861
SfaNI GCATC 2 cut(s) 646, 1009
SmiMI CAYNNNNRTG 1 cut(s) 884
SmlI CTYRAG 2 cut(s) 326, 668
SmoI CTYRAG 2 cut(s) 326, 668
Sse9I AATT 4 cut(s) 19, 41, 631, 755
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 315, 859
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 6 cut(s) 84, 412, 431, 602, 618, 799
TaiI ACGT 2 cut(s) 114, 219
TaqI TCGA 3 cut(s) 63, 407, 612
TasI AATT 4 cut(s) 19, 41, 631, 755
TatI WGTACW 1 cut(s) 794
TfiI GAWTC 4 cut(s) 74, 538, 1004, 1010
Tru1I TTAA 3 cut(s) 167, 327, 933
Tru9I TTAA 3 cut(s) 167, 327, 933
TscAI CASTG 2 cut(s) 891, 1021
TseFI GTSAC 2 cut(s) 259, 508
TseI GCWGC 2 cut(s) 246, 626
Tsp45I GTSAC 2 cut(s) 259, 508
TspDTI ATGAA 3 cut(s) 504, 509, 779
TspGWI ACGGA 4 cut(s) 413, 464, 496, 750
TspRI CASTG 2 cut(s) 891, 1021
Tth111I GACNNNGTC 2 cut(s) 218, 257
Van91I CCANNNNNTGG 1 cut(s) 866
Vha464I CTTAAG 1 cut(s) 326
XapI RAATTY 2 cut(s) 19, 755
XceI RCATGY 3 cut(s) 695, 835, 907
XcmI CCANNNNNNNNNTGG 1 cut(s) 984
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.