Rorug05G0099000

JmjC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009293
Physical Location & Seq
Forward (+)
8729694 .. 8732076
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0099000.1

Sequence Viewer

Length: 945 bp
ATGGTGTTTCATAATTTCATATATCAGCTTGATGTAAGCTTCAAAAGAGCAGACAACACCTCATTCACGATAGGTCGCTCCTCGGGATTTTGGTTGGTGCAAAACAAGGCTAGCTTGAGCAGCTCTTCTGCACTTGCCTCCTGTTCCTTGGAGATATTTGAAGTTAGCAATGGGTCCAGAACTTCAAGAAGCGAATCTGATCCATTTGCAAGGGCTTTCTCCACTAGTTGGTGTAAGCTCATTGGCAGCCCATTCTCTTCCATGAGTCCTGTTGGCCTTTGTCATCACTATTACACCAAAGCTGAACACGTCTACCTTGGTTGTGATTTTCCTCATACATGGTGCATCGCAAAGCCTTCAACGAGTAAAGAAGCACTGGTCAACAATCTACAATATGCATGCAATAACATAAATGCAATGGATTGCAAGGCAATTCAAGAAGGAGATCCCTGCTCCAAACCTAATGATCTTTTGCTTTATGCTTCATTTGCCATGAATGCTTACTACCAGGACAGGGGGAGGCACTACTGGAACTGTGACTTCGGCAACTCTGGTCTCATTTCCTTGACAGATCCAAGTTATGGTAATTGCACATATGAAGGGGGAGAGACAGCGATGGATGACTCAAATTTACCGAGTTCCTTCACTAAGTATGGCAACTGGTGTGTAGCAAGCCCTTCAGCAAGTGATGATCAGCTACAAGCGAACATTGAGTTTGCTTGTGGCAAGGTAGACTGTAGTATTATAAGGTCTGGTGATGCCTGTTTCGAGCCAAACACTGTCAAGAACCGCGCCTCAATTGCCGTGAATCTTTACTATCACCAAACAGGTCAATCAGATACGAGTTGTGATTTTAATGGCAGTGGTAACATTGTTAGAACTGATCCAAACTTGATTGTGTATGCTTGTACTGGTTATGGAGATTGCAAATTCAAGGGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

314

Amino Acids

34.45

Weight (kDa)

5.46

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 113 - 185 8.6e-17 X8 domain
X8 PF07983 221 - 289 3.9e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AccB7I CCANNNNNTGG 2 cut(s) 228, 581
AccI GTMKAC 2 cut(s) 312, 732
AccII CGCG 1 cut(s) 792
AciI CCGC 1 cut(s) 790
AclWI GGATC 4 cut(s) 194, 440, 566, 878
AcsI RAATTY 2 cut(s) 628, 929
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 1 cut(s) 910
AfiI CCNNNNNNNGG 3 cut(s) 228, 514, 581
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 6 cut(s) 43, 161, 186, 360, 437, 934
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 8 cut(s) 28, 39, 114, 123, 238, 302, 697, 942
AluI AGCT 8 cut(s) 28, 39, 114, 123, 238, 302, 697, 942
Alw26I GTCTC 2 cut(s) 560, 602
AlwI GGATC 4 cut(s) 194, 440, 566, 878
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 120, 246
ApoI RAATTY 2 cut(s) 628, 929
AspLEI GCGC 1 cut(s) 794
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 767, 812
AsuNHI GCTAGC 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 132, 258
BccI CCATC 1 cut(s) 610
BceAI ACGGC 1 cut(s) 788
BciT130I CCWGG 1 cut(s) 509
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 2 cut(s) 560, 602
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 2 cut(s) 111, 225
BfmI CTRYAG 1 cut(s) 736
BisI GCNGC 2 cut(s) 121, 247
BlsI GCNGC 2 cut(s) 122, 248
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 2 cut(s) 354, 748
BmtI GCTAGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 3 cut(s) 81, 147, 316
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 514, 581
Bse1I ACTGG 4 cut(s) 381, 533, 665, 916
Bse3DI GCAATG 2 cut(s) 175, 423
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 3 cut(s) 81, 147, 316
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 3 cut(s) 228, 514, 581
BseMI GCAATG 2 cut(s) 175, 423
BseNI ACTGG 4 cut(s) 381, 533, 665, 916
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 132, 258
BsgI GTGCAG 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 228, 514, 581
BsmAI GTCTC 2 cut(s) 560, 602
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 6 cut(s) 199, 445, 466, 571, 691, 883
BspACI CCGC 1 cut(s) 790
BspANI GGCC 1 cut(s) 276
BspFNI CGCG 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 175
BspOI GCTAGC 1 cut(s) 114
BspPI GGATC 4 cut(s) 194, 440, 566, 878
BspQI GCTCTTC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 560
BsrDI GCAATG 2 cut(s) 175, 423
BsrI ACTGG 4 cut(s) 381, 533, 665, 916
BssECI CCNNGG 3 cut(s) 81, 147, 316
BssMI GATC 6 cut(s) 199, 445, 466, 571, 691, 883
BssT1I CCWWGG 2 cut(s) 147, 316
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 536, 737, 781
Bst6I CTCTTC 2 cut(s) 130, 262
BstC8I GCNNGC 3 cut(s) 112, 400, 673
BstDEI CTNAG 1 cut(s) 648
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 1 cut(s) 792
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 6 cut(s) 202, 448, 469, 574, 694, 886
BstMAI GTCTC 2 cut(s) 560, 602
BstMBI GATC 6 cut(s) 199, 445, 466, 571, 691, 883
BstMWI GCNNNNNNNGC 4 cut(s) 120, 488, 497, 800
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 1 cut(s) 736
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 2 cut(s) 132, 258
BstX2I RGATCY 2 cut(s) 445, 571
BstYI RGATCY 2 cut(s) 445, 571
BsuRI GGCC 1 cut(s) 276
BtgZI GCGATG 2 cut(s) 331, 629
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 625
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 3 cut(s) 374, 777, 868
Cac8I GCNNGC 3 cut(s) 112, 400, 673
CfoI GCGC 1 cut(s) 794
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 909
CviAII CATG 4 cut(s) 262, 339, 399, 493
CviQI GTAC 1 cut(s) 909
DdeI CTNAG 1 cut(s) 648
DpnI GATC 6 cut(s) 201, 447, 468, 573, 693, 885
DpnII GATC 6 cut(s) 199, 445, 466, 571, 691, 883
Eam1104I CTCTTC 2 cut(s) 130, 262
EarI CTCTTC 2 cut(s) 130, 262
Eco130I CCWWGG 2 cut(s) 147, 316
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 2 cut(s) 147, 316
EcoT22I ATGCAT 1 cut(s) 400
ErhI CCWWGG 2 cut(s) 147, 316
FaeI CATG 4 cut(s) 265, 342, 402, 496
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 4 cut(s) 261, 338, 398, 492
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 2 cut(s) 312, 732
Fnu4HI GCNGC 2 cut(s) 121, 247
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 121, 247
FspBI CTAG 2 cut(s) 111, 225
GlaI GCGC 1 cut(s) 793
GluI GCNGC 2 cut(s) 121, 247
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 794
Hin1II CATG 4 cut(s) 265, 342, 402, 496
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 4 cut(s) 194, 265, 623, 808
HphI GGTGA 2 cut(s) 767, 812
Hpy166II GTNNAC 3 cut(s) 313, 382, 733
Hpy188I TCNGA 2 cut(s) 199, 838
Hpy188III TCNNGA 6 cut(s) 67, 84, 177, 186, 437, 784
Hpy8I GTNNAC 3 cut(s) 313, 382, 733
HpyAV CCTTC 5 cut(s) 366, 434, 593, 652, 687
HpyCH4III ACNGT 3 cut(s) 536, 737, 781
HpyCH4IV ACGT 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 488, 497, 800
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 4 cut(s) 265, 342, 402, 496
HspAI GCGC 1 cut(s) 792
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 6 cut(s) 199, 445, 466, 571, 691, 883
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 83, 458
Lsp1109I GCAGC 2 cut(s) 132, 258
LweI GCATC 2 cut(s) 354, 748
MaeI CTAG 2 cut(s) 111, 225
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 536, 866
MalI GATC 6 cut(s) 201, 447, 468, 573, 693, 885
MboI GATC 6 cut(s) 199, 445, 466, 571, 691, 883
MboII GAAGA 2 cut(s) 117, 249
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 2 cut(s) 445, 571
MluCI AATT 6 cut(s) 13, 432, 586, 628, 798, 929
MlyI GAGTC 2 cut(s) 274, 617
MnlI CCTC 6 cut(s) 70, 91, 148, 342, 513, 805
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 1 cut(s) 855
MspR9I CCNGG 1 cut(s) 509
MunI CAATTG 1 cut(s) 798
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 4 cut(s) 120, 488, 497, 800
NdeI CATATG 1 cut(s) 595
NdeII GATC 6 cut(s) 199, 445, 466, 571, 691, 883
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 4 cut(s) 265, 342, 402, 496
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 1 cut(s) 402
PaeI GCATGC 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 130
PctI GAATGC 1 cut(s) 502
PfeI GAWTC 2 cut(s) 194, 808
PflMI CCANNNNNTGG 2 cut(s) 228, 581
PkrI GCNGC 2 cut(s) 122, 248
PleI GAGTC 2 cut(s) 273, 617
PpsI GAGTC 2 cut(s) 273, 617
PsiI TTATAA 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 174
PsuI RGATCY 2 cut(s) 445, 571
RsaI GTAC 1 cut(s) 910
RsaNI GTAC 1 cut(s) 909
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 855
SatI GCNGC 2 cut(s) 121, 247
Sau3AI GATC 6 cut(s) 199, 445, 466, 571, 691, 883
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 2 cut(s) 274, 617
ScrFI CCNGG 1 cut(s) 509
SfaNI GCATC 2 cut(s) 354, 748
SfcI CTRYAG 1 cut(s) 736
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SpeI ACTAGT 1 cut(s) 224
SphI GCATGC 1 cut(s) 402
Sse9I AATT 6 cut(s) 13, 432, 586, 628, 798, 929
SsiI CCGC 1 cut(s) 790
SspMI CTAG 2 cut(s) 111, 225
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 2 cut(s) 147, 316
TaaI ACNGT 3 cut(s) 536, 737, 781
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 768
TasI AATT 6 cut(s) 13, 432, 586, 628, 798, 929
TatI WGTACW 1 cut(s) 908
TfiI GAWTC 2 cut(s) 194, 808
Tru1I TTAA 1 cut(s) 855
Tru9I TTAA 1 cut(s) 855
TscAI CASTG 3 cut(s) 381, 784, 868
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 2 cut(s) 120, 246
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 4 cut(s) 7, 474, 509, 612
TspRI CASTG 3 cut(s) 381, 784, 868
Van91I CCANNNNNTGG 2 cut(s) 228, 581
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 2 cut(s) 628, 929
XceI RCATGY 1 cut(s) 402
XmiI GTMKAC 2 cut(s) 312, 732
XspI CTAG 2 cut(s) 111, 225
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.