Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009293

Physical Location & Seq

Genomic Coordinates Forward (+)

8734080 .. 8737093

Gene Structure 3014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCGCCTCTCAATGGTGTTCATCGCCCTCCAATTCCAATTCTATGCTGCAATGGCCAAGTCTATTTCCCTCTGCACACTTGCAGCCTCTCTGCTCGTTCTGCTTCATGCCAATGCTGCTTCTCCTGGAGATGGTCATACTCCATCCACTGAGGAGATTGCCAAGACTTGGTGCGTCCCCAATCCATCGTTGACCTATACGGCTCTGCAAGACTTGGAAACGTATGCTTGCAATTATGTGGATTGCTCTTCAATTCACAGTGGGGGTCCATGCTTCAACCCCTCAAACGCCTTTAGTCATGCAGCCTTTGCCATGAATGCTTATTATCACGACCAACATCAGTGTTTTGGTAACTCTGGACTCATATCTATCATTGATCCAAGCAATGGGAGCTGCTACTTTGCAGGTAGAGAAGAGACGGTTTCCTCTGCAGCAGCTCTGAGTACATGGTGTGTTGCAAAGCCAACTGCCACTGACAATCTTCTACAATTGAACATTGACTTCGCTTGTAGTCATGTCAACTGTAGTGTTATTGAACCCCGTGGTGAATGCCAATTACCAGACGCTATAATGAACCACGCATCTGTTGCCATGAATCTTTACTATCAATCTTTTGGCAGAACAGATATGAGCTGTTATTTTCAGTCCACAGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTCTATGAAGGGGTTTTCCCTGACAGCGAACCAGCTGTGACTCCTGTCCCTGCAAATCTCAATATAAAAAAGGGGAAAAGTAGGGCCTTTTCTGCAACATCAGTTGGAGTTATGGTGATGGGGTCGATCATTGGTTGTGCGCTGGTGGCAGTGGCTATATATGTTATGCTCTGGCTTCGTCAGCCCCGCCCGCCAGTGGTAAAGGAAGTTCACATGGACCCATTGCCACAGCCATTGTATCAACCACCAGAGCCATCAGCTTCCCCAGCTCCTGTTGAGGGTTCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

326

Amino Acids

34.99

Weight (kDa)

5.14

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	56 - 114	4.9e-14	X8 domain
X8	PF07983	149 - 219	2.8e-17	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45880 AT3G45880
fragaria_vesca	FvH4_3g16420 FvH4_3g16420
malus_domestica	MD05G1209900.v1.1
prunus_persica	Prupe.4G147600_v2.0.a1 Prupe.4G147600_v2.0.a1
pyrus_communis	pycom05g19580
rosa_chinensis	RchiOBHm_Chr5g0027441
rosa_laevigata	RLG00000033019
rosa_multiflora	Rmu_sc0003500.1_g000047 Rmu_sc0007802.1_g000022
rosa_roxburghii	Rroxscaffold_1G00052090
rosa_rugosa	Rorug05G0098800 Rorug05G0098900 Rorug05G0099000 Rorug05G0099100
rosa_samantha	Rh5AG193100 Rh5BG190900 Rh5CG211300 Rh5DG192600
rosa_wichuraiana	Rw5G017600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccB7I	CCANNNNNTGG	3 cut(s)	168, 386, 680
AciI	CCGC	2 cut(s)	877, 881
AclWI	GGATC	2 cut(s)	371, 665
AcoI	YGGCCR	1 cut(s)	54
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	7 cut(s)	13, 131, 168, 386, 680, 886, 968
AgsI	TTSAA	5 cut(s)	252, 277, 493, 536, 668
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	6 cut(s)	393, 437, 633, 725, 950, 959
AluI	AGCT	6 cut(s)	393, 437, 633, 725, 950, 959
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	371, 665
AlwNI	CAGNNNCTG	1 cut(s)	962
AoxI	GGCC	2 cut(s)	54, 774
ApeKI	GCWGC	7 cut(s)	47, 83, 116, 302, 393, 431, 434
AspLEI	GCGC	2 cut(s)	6, 832
AspS9I	GGNCC	3 cut(s)	266, 774, 907
AsuHPI	GGTGA	2 cut(s)	557, 817
AvaII	GGWCC	2 cut(s)	266, 907
BalI	TGGCCA	1 cut(s)	56
BbvI	GCAGC	7 cut(s)	34, 95, 103, 314, 380, 443, 446
BccI	CCATC	5 cut(s)	125, 151, 193, 802, 952
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	410
BfmI	CTRYAG	2 cut(s)	429, 523
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	7 cut(s)	48, 84, 117, 303, 394, 432, 435
BlsI	GCNGC	7 cut(s)	49, 85, 118, 304, 395, 433, 436
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	2 cut(s)	266, 907
BmgT120I	GGNCC	3 cut(s)	266, 774, 907
BmiI	GGNNCC	2 cut(s)	267, 909
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	590
BoxI	GACNNNNGTC	1 cut(s)	734
BpmI	CTGGAG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	7 cut(s)	13, 131, 168, 386, 680, 886, 968
Bse1I	ACTGG	1 cut(s)	884
Bse3DI	GCAATG	3 cut(s)	57, 391, 911
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	7 cut(s)	13, 131, 168, 386, 680, 886, 968
BseMI	GCAATG	3 cut(s)	57, 391, 911
BseMII	CTCAG	2 cut(s)	141, 431
BseNI	ACTGG	1 cut(s)	884
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	7 cut(s)	34, 95, 103, 314, 380, 443, 446
BseYI	CCCAGC	1 cut(s)	955
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	56, 776
BslFI	GGGAC	2 cut(s)	161, 722
BslI	CCNNNNNNNGG	7 cut(s)	13, 131, 168, 386, 680, 886, 968
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	161, 722
BsmI	GAATGC	2 cut(s)	322, 554
BsnI	GGCC	2 cut(s)	56, 776
Bsp143I	GATC	3 cut(s)	376, 670, 816
BspACI	CCGC	2 cut(s)	877, 881
BspANI	GGCC	2 cut(s)	56, 776
BspCNI	CTCAG	2 cut(s)	142, 432
BspLI	GGNNCC	2 cut(s)	267, 909
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	371, 665
BspQI	GCTCTTC	1 cut(s)	253
BsrDI	GCAATG	3 cut(s)	57, 391, 911
BsrI	ACTGG	1 cut(s)	884
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	376, 670, 816
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	260, 421, 524
Bst6I	CTCTTC	2 cut(s)	253, 408
BstAPI	GCANNNNNTGC	2 cut(s)	308, 587
BstC8I	GCNNGC	2 cut(s)	229, 881
BstDEI	CTNAG	2 cut(s)	150, 440
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	6, 832
BstKTI	GATC	3 cut(s)	379, 673, 819
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	3 cut(s)	376, 670, 816
BstNI	CCWGG	1 cut(s)	126
BstPAI	GACNNNNGTC	1 cut(s)	734
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	2 cut(s)	429, 523
BstV1I	GCAGC	7 cut(s)	34, 95, 103, 314, 380, 443, 446
BstX2I	RGATCY	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	670
BsuRI	GGCC	2 cut(s)	56, 776
BtgI	CCRYGG	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	6 cut(s)	147, 265, 347, 471, 846, 891
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	229, 881
CaiI	CAGNNNCTG	1 cut(s)	962
CfoI	GCGC	2 cut(s)	6, 832
Cfr13I	GGNCC	3 cut(s)	266, 774, 907
CseI	GACGC	2 cut(s)	163, 572
Csp6I	GTAC	1 cut(s)	444
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviAII	CATG	9 cut(s)	107, 270, 299, 313, 447, 515, 592, 655, 904
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	2 cut(s)	150, 440
DpnI	GATC	3 cut(s)	378, 672, 818
DpnII	GATC	3 cut(s)	376, 670, 816
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	253, 408
EarI	CTCTTC	2 cut(s)	253, 408
Eco47I	GGWCC	2 cut(s)	266, 907
EcoO109I	RGGNCCY	1 cut(s)	774
EcoRII	CCWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	9 cut(s)	110, 273, 302, 316, 450, 518, 595, 658, 907
FaqI	GGGAC	2 cut(s)	161, 722
FatI	CATG	9 cut(s)	106, 269, 298, 312, 446, 514, 591, 654, 903
FauI	CCCGC	2 cut(s)	884, 888
Fnu4HI	GCNGC	7 cut(s)	48, 84, 117, 303, 394, 432, 435
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	7 cut(s)	48, 84, 117, 303, 394, 432, 435
GlaI	GCGC	2 cut(s)	5, 831
GluI	GCNGC	7 cut(s)	48, 84, 117, 303, 394, 432, 435
GsaI	CCCAGC	1 cut(s)	959
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	56, 776
HgaI	GACGC	2 cut(s)	163, 572
HhaI	GCGC	2 cut(s)	6, 832
Hin1II	CATG	9 cut(s)	110, 273, 302, 316, 450, 518, 595, 658, 907
Hin6I	GCGC	2 cut(s)	4, 830
HinP1I	GCGC	2 cut(s)	4, 830
HincII	GTYRAC	2 cut(s)	192, 520
HindII	GTYRAC	2 cut(s)	192, 520
HinfI	GANTC	3 cut(s)	360, 595, 730
HphI	GGTGA	2 cut(s)	557, 817
Hpy166II	GTNNAC	4 cut(s)	192, 520, 648, 901
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	3 cut(s)	329, 357, 681
Hpy8I	GTNNAC	4 cut(s)	192, 520, 648, 901
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	3 cut(s)	260, 421, 524
HpyCH4IV	ACGT	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	150, 440
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	9 cut(s)	110, 273, 302, 316, 450, 518, 595, 658, 907
HspAI	GCGC	2 cut(s)	4, 830
Kzo9I	GATC	3 cut(s)	376, 670, 816
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	390, 964
Lsp1109I	GCAGC	7 cut(s)	34, 95, 103, 314, 380, 443, 446
LweI	GCATC	1 cut(s)	590
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	350, 727
MalI	GATC	3 cut(s)	378, 672, 818
MboI	GATC	3 cut(s)	376, 670, 816
MboII	GAAGA	4 cut(s)	240, 425, 473, 680
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	1 cut(s)	670
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	6 cut(s)	32, 38, 232, 252, 488, 554
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	354, 724
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	8 cut(s)	17, 38, 80, 97, 145, 292, 436, 961
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MslI	CAYNNNNRTG	3 cut(s)	111, 653, 659
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	725
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	488
Mva1269I	GAATGC	2 cut(s)	322, 554
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	376, 670, 816
NlaIII	CATG	9 cut(s)	110, 273, 302, 316, 450, 518, 595, 658, 907
NlaIV	GGNNCC	2 cut(s)	267, 909
NmuCI	GTSAC	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	253
PctI	GAATGC	2 cut(s)	322, 554
PfeI	GAWTC	1 cut(s)	595
PflMI	CCANNNNNTGG	3 cut(s)	168, 386, 680
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	7 cut(s)	49, 85, 118, 304, 395, 433, 436
PleI	GAGTC	2 cut(s)	354, 724
PpsI	GAGTC	2 cut(s)	354, 724
PshAI	GACNNNNGTC	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	955
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	267, 909
PspPI	GGNCC	3 cut(s)	266, 774, 907
PsrI	GAACNNNNNNTAC	2 cut(s)	882, 914
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	3 cut(s)	111, 653, 659
SapI	GCTCTTC	1 cut(s)	253
SatI	GCNGC	7 cut(s)	48, 84, 117, 303, 394, 432, 435
Sau3AI	GATC	3 cut(s)	376, 670, 816
Sau96I	GGNCC	3 cut(s)	266, 774, 907
SchI	GAGTC	2 cut(s)	354, 724
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	9 cut(s)	197, 224, 395, 409, 439, 635, 727, 952, 961
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	2 cut(s)	429, 523
SinI	GGWCC	2 cut(s)	266, 907
SmiMI	CAYNNNNRTG	3 cut(s)	111, 653, 659
Sse9I	AATT	6 cut(s)	32, 38, 232, 252, 488, 554
SsiI	CCGC	2 cut(s)	877, 881
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	260, 421, 524
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	815
TasI	AATT	6 cut(s)	32, 38, 232, 252, 488, 554
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	595
TscAI	CASTG	6 cut(s)	154, 265, 347, 478, 846, 891
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	7 cut(s)	47, 83, 116, 302, 393, 431, 434
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	6 cut(s)	10, 95, 329, 587, 608, 711
TspRI	CASTG	6 cut(s)	154, 265, 347, 478, 846, 891
Van91I	CCANNNNNTGG	3 cut(s)	168, 386, 680
VpaK11BI	GGWCC	2 cut(s)	266, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.