Rroxscaffold_1G00052090

JmjC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009293
Physical Location & Seq
Forward (+)
72811084 .. 72815243
4160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052090.1

Sequence Viewer

Length: 1068 bp
ATGGAGGGAAAAATCGAGACATTATGGAACGAAGTACGGGAGCTCAATCTAGGCACCTCCGGCGAACTGGACCGACTCCACTTCCCGCCAACTCCACTCCAATTCCTCCGAGACTTCGTCTCCCAAAACAAGCCCTGCATCATCTCCAACGCCACCCATCACTGGCCGGCCCTCACCCGCTGGACCTCCGACTCCTACCTCACCTCCGCCCTCTCCTCCTCCCACGTGTCCCTCCACCTCACCCCTCACGGCCGCGCCGACGCCCTCGTCCCCTCCCCTTCCTCCTCCTCCTCCTCCCTCTGCTTCGCCTCCGCTCACGTGCAGCGCACGCCCTTCCCCGAAGCCCTCCGCCTCATCACGGCCGCCAAAAACGACGGGTCGTCGTTCGTGGCCTACGCGCAGCAGCAGAACAATTGCTTCCCCTCCGAGTACTCGCCGCTGGCGGCGGACTGCGATTCTCACATCCAATTCGCCACCGAAGCCCTAGGTTGCCGACCCGAGGCAGTCAACATGTGGATTGGCGACGAGCGCTCGACGACGTCGTTTCACAAGGATCACTACGAGAATCTCTACGCTGTGGTCACGGGACAGAAGCATTTCCTCCTCCTCCCTCCCACCGATGTGCATCGGATGTACGTAAGGGAGTACCCGGCCGCTCAGTATTCGTATTCTCCGGTCACCGGAGAGTTTGAGCTGGAAATGGAGAGTCCGGCTCGGTCTGTGCCTTGGTCTAGCGTTGATCCTTACCCTGCTGCTGAGGACAGCTGCTCTTCTCTCTCCAAGTTCCCTTTGTTCTTCAATGGGCCTAAGCCATTTTGCTGTACGATTAATCCAGGAGAGATGCTTTACTTGCCGAGTATGTGGTTTCATCATGTTAGGCAAAGCCCAGATAGCAGAGGACGAACTATTGCTGTCAATTACTGGTATGATATGCAGTTTGATATCAAGTATGCTTACTTCAACTTCTTGCAATCAATTCAATGCCCACCGATTGAGAGTCAAACGCTGGCCGAGACAGTGCAGGAGGATTTAGATTCTGATGCACCGGAGAAGACTGAAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

355

Amino Acids

40.05

Weight (kDa)

5.07

Isoelectric Point (pI)

61.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 32 - 314 1.1e-76 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 542
AccB1I GGYRCC 1 cut(s) 53
AccBSI CCGCTC 2 cut(s) 314, 656
AccII CGCG 2 cut(s) 255, 398
AclWI GGATC 2 cut(s) 561, 734
AcoI YGGCCR 5 cut(s) 164, 250, 360, 651, 1008
AcvI CACGTG 2 cut(s) 226, 319
AcyI GRCGYC 2 cut(s) 261, 539
AfaI GTAC 5 cut(s) 36, 431, 635, 647, 823
AfeI AGCGCT 1 cut(s) 530
AfiI CCNNNNNNNGG 4 cut(s) 162, 358, 499, 680
AflIII ACRYGT 2 cut(s) 225, 510
AgsI TTSAA 3 cut(s) 799, 961, 980
AhdI GACNNNNNGTC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 832
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 3 cut(s) 43, 694, 765
AluI AGCT 3 cut(s) 43, 694, 765
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 4 cut(s) 11, 105, 124, 1007
AlwI GGATC 2 cut(s) 561, 734
Ama87I CYCGRG 1 cut(s) 497
Aor51HI AGCGCT 1 cut(s) 530
AoxI GGCC 8 cut(s) 164, 168, 250, 360, 390, 651, 803, 1008
ApeKI GCWGC 5 cut(s) 322, 400, 403, 752, 765
AseI ATTAAT 1 cut(s) 828
Asp700I GAANNNNTTC 1 cut(s) 596
AspA2I CCTAGG 1 cut(s) 484
AspLEI GCGC 4 cut(s) 257, 327, 400, 531
AspS9I GGNCC 4 cut(s) 70, 169, 183, 803
AsuC2I CCSGG 1 cut(s) 650
AsuHPI GGTGA 4 cut(s) 166, 193, 232, 670
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 2 cut(s) 70, 183
AvrII CCTAGG 1 cut(s) 484
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 941, 973
BbrPI CACGTG 2 cut(s) 226, 319
BbsI GAAGAC 1 cut(s) 1058
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 756
BbvI GCAGC 5 cut(s) 334, 412, 415, 739, 752
BccI CCATC 1 cut(s) 165
BceAI ACGGC 2 cut(s) 265, 375
BciT130I CCWGG 1 cut(s) 834
BcnI CCSGG 1 cut(s) 650
BcoDI GTCTC 4 cut(s) 11, 105, 124, 1007
BfaI CTAG 3 cut(s) 50, 485, 732
BfoI RGCGCY 1 cut(s) 532
BlnI CCTAGG 1 cut(s) 484
BmcAI AGTACT 1 cut(s) 431
Bme1390I CCNGG 2 cut(s) 650, 834
Bme18I GGWCC 2 cut(s) 70, 183
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 4 cut(s) 70, 169, 183, 803
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 650, 834
BmsI GCATC 4 cut(s) 147, 634, 831, 1030
BpiI GAAGAC 1 cut(s) 1058
BplI GAGNNNNNCTC 2 cut(s) 697, 729
Bpu10I CCTNAGC 2 cut(s) 756, 807
BpuMI CCSGG 1 cut(s) 650
BsaAI YACGTR 3 cut(s) 226, 319, 637
BsaBI GATNNNNATC 1 cut(s) 624
BsaHI GRCGYC 2 cut(s) 261, 539
BsaJI CCNNGG 3 cut(s) 484, 498, 725
BsaWI WCCGGW 3 cut(s) 673, 680, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 358, 499, 680
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 3 cut(s) 72, 167, 926
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 3 cut(s) 484, 498, 725
BseGI GGATG 2 cut(s) 462, 636
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 4 cut(s) 162, 358, 499, 680
BseMII CTCAG 2 cut(s) 671, 747
BseNI ACTGG 3 cut(s) 72, 167, 926
BseRI GAGGAG 8 cut(s) 205, 208, 274, 277, 280, 283, 593, 596
BseX3I CGGCCG 3 cut(s) 250, 360, 651
BseXI GCAGC 5 cut(s) 334, 412, 415, 739, 752
BsgI GTGCAG 2 cut(s) 341, 1040
Bsh1236I CGCG 2 cut(s) 255, 398
Bsh1285I CGRYCG 3 cut(s) 253, 363, 654
BshFI GGCC 8 cut(s) 166, 170, 252, 362, 392, 653, 805, 1010
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 3 cut(s) 253, 363, 654
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 7 cut(s) 60, 167, 650, 674, 681, 710, 1046
BslFI GGGAC 3 cut(s) 214, 254, 600
BslI CCNNNNNNNGG 4 cut(s) 162, 358, 499, 680
BsmAI GTCTC 4 cut(s) 11, 105, 124, 1007
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 3 cut(s) 214, 254, 600
BsnI GGCC 8 cut(s) 166, 170, 252, 362, 392, 653, 805, 1010
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 553, 739
BspANI GGCC 8 cut(s) 166, 170, 252, 362, 392, 653, 805, 1010
BspCNI CTCAG 2 cut(s) 670, 748
BspFNI CGCG 2 cut(s) 255, 398
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 561, 734
BspQI GCTCTTC 1 cut(s) 775
BspT107I GGYRCC 1 cut(s) 53
BsrBI CCGCTC 2 cut(s) 314, 656
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 3 cut(s) 72, 167, 926
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 484, 498, 725
BssMI GATC 2 cut(s) 553, 739
BssNI GRCGYC 2 cut(s) 261, 539
BssT1I CCWWGG 2 cut(s) 484, 725
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 1 cut(s) 1018
Bst6I CTCTTC 1 cut(s) 775
BstACI GRCGYC 2 cut(s) 261, 539
BstBAI YACGTR 3 cut(s) 226, 319, 637
BstC8I GCNNGC 4 cut(s) 168, 329, 441, 1008
BstDEI CTNAG 3 cut(s) 657, 756, 807
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 2 cut(s) 462, 636
BstFNI CGCG 2 cut(s) 255, 398
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 4 cut(s) 257, 327, 400, 531
BstKTI GATC 2 cut(s) 556, 742
BstMAI GTCTC 4 cut(s) 11, 105, 124, 1007
BstMBI GATC 2 cut(s) 553, 739
BstMCI CGRYCG 3 cut(s) 253, 363, 654
BstMWI GCNNNNNNNGC 6 cut(s) 60, 328, 479, 528, 850, 891
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 514
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 2 cut(s) 648, 832
BstSNI TACGTA 1 cut(s) 637
BstUI CGCG 2 cut(s) 255, 398
BstV1I GCAGC 5 cut(s) 334, 412, 415, 739, 752
BstV2I GAAGAC 1 cut(s) 1058
BstZI CGGCCG 3 cut(s) 250, 360, 651
BsuRI GGCC 8 cut(s) 166, 170, 252, 362, 392, 653, 805, 1010
BtsCI GGATG 2 cut(s) 462, 636
BtsIMutI CAGTG 2 cut(s) 160, 1023
Cac8I GCNNGC 4 cut(s) 168, 329, 441, 1008
CfoI GCGC 4 cut(s) 257, 327, 400, 531
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 4 cut(s) 70, 169, 183, 803
CseI GACGC 1 cut(s) 269
Csp6I GTAC 5 cut(s) 35, 430, 634, 646, 822
CviAII CATG 2 cut(s) 511, 872
CviQI GTAC 5 cut(s) 35, 430, 634, 646, 822
DdeI CTNAG 3 cut(s) 657, 756, 807
DpnI GATC 2 cut(s) 555, 741
DpnII GATC 2 cut(s) 553, 739
DrdI GACNNNNNNGTC 1 cut(s) 266
DriI GACNNNNNGTC 1 cut(s) 379
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 5 cut(s) 164, 250, 360, 651, 1008
EagI CGGCCG 3 cut(s) 250, 360, 651
Eam1104I CTCTTC 1 cut(s) 775
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 775
EciI GGCGGA 3 cut(s) 196, 338, 461
Ecl136II GAGCTC 1 cut(s) 43
EclXI CGGCCG 3 cut(s) 250, 360, 651
Eco105I TACGTA 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 484, 725
Eco24I GRGCYC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 943
Eco47I GGWCC 2 cut(s) 70, 183
Eco47III AGCGCT 1 cut(s) 530
Eco52I CGGCCG 3 cut(s) 250, 360, 651
Eco53kI GAGCTC 1 cut(s) 43
Eco72I CACGTG 2 cut(s) 226, 319
Eco88I CYCGRG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 676
EcoICRI GAGCTC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 2 cut(s) 484, 725
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 2 cut(s) 484, 725
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 2 cut(s) 514, 875
FaiI YATR 7 cut(s) 25, 512, 860, 873, 927, 932, 951
FaqI GGGAC 3 cut(s) 214, 254, 600
FatI CATG 2 cut(s) 510, 871
FauI CCCGC 2 cut(s) 93, 185
FokI GGATG 2 cut(s) 449, 643
FriOI GRGCYC 1 cut(s) 45
FseI GGCCGGCC 1 cut(s) 170
FspBI CTAG 3 cut(s) 50, 485, 732
GlaI GCGC 4 cut(s) 256, 326, 399, 530
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 8 cut(s) 166, 170, 252, 362, 392, 653, 805, 1010
HapII CCGG 7 cut(s) 60, 167, 650, 674, 681, 710, 1046
HgaI GACGC 1 cut(s) 269
HhaI GCGC 4 cut(s) 257, 327, 400, 531
Hin1I GRCGYC 2 cut(s) 261, 539
Hin1II CATG 2 cut(s) 514, 875
Hin6I GCGC 4 cut(s) 255, 325, 398, 529
HinP1I GCGC 4 cut(s) 255, 325, 398, 529
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 7 cut(s) 75, 191, 455, 565, 706, 997, 1034
HpaII CCGG 7 cut(s) 60, 167, 650, 674, 681, 710, 1046
HphI GGTGA 4 cut(s) 166, 193, 232, 670
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 5 cut(s) 110, 190, 427, 630, 1039
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 7 cut(s) 263, 377, 385, 527, 538, 541, 544
HpyAV CCTTC 2 cut(s) 288, 343
HpyCH4III ACNGT 1 cut(s) 1018
HpyCH4IV ACGT 4 cut(s) 225, 318, 539, 636
HpyCH4V TGCA 7 cut(s) 138, 322, 625, 934, 970, 1021, 1043
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 328, 479, 528, 850, 891
HpyF3I CTNAG 3 cut(s) 657, 756, 807
HpySE526I ACGT 4 cut(s) 225, 318, 539, 636
Hsp92I GRCGYC 2 cut(s) 261, 539
Hsp92II CATG 2 cut(s) 514, 875
HspAI GCGC 4 cut(s) 255, 325, 398, 529
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 553, 739
LguI GCTCTTC 1 cut(s) 775
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 5 cut(s) 334, 412, 415, 739, 752
LweI GCATC 4 cut(s) 147, 634, 831, 1030
MaeI CTAG 3 cut(s) 50, 485, 732
MaeII ACGT 4 cut(s) 225, 318, 539, 636
MaeIII GTNAC 2 cut(s) 580, 676
MalI GATC 2 cut(s) 555, 741
MbiI CCGCTC 2 cut(s) 314, 656
MboI GATC 2 cut(s) 553, 739
MboII GAAGA 3 cut(s) 762, 787, 1063
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 5 cut(s) 101, 412, 467, 916, 975
MlyI GAGTC 4 cut(s) 69, 185, 715, 1006
MmeI TCCRAC 2 cut(s) 171, 213
MroNI GCCGGC 1 cut(s) 166
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 1 cut(s) 828
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 3 cut(s) 180, 439, 765
MspI CCGG 7 cut(s) 60, 167, 650, 674, 681, 710, 1046
MspR9I CCNGG 2 cut(s) 650, 834
MunI CAATTG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 2 cut(s) 255, 398
MwoI GCNNNNNNNGC 6 cut(s) 60, 328, 479, 528, 850, 891
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 650
NdeII GATC 2 cut(s) 553, 739
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 2 cut(s) 514, 875
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 2 cut(s) 879, 1036
NmuCI GTSAC 2 cut(s) 580, 676
NspI RCATGY 1 cut(s) 514
OliI CACNNNNGTG 1 cut(s) 620
PciI ACATGT 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 775
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 539
PdiI GCCGGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 3 cut(s) 455, 565, 1034
PflFI GACNNNGTC 2 cut(s) 116, 538
PfoI TCCNGGA 1 cut(s) 832
PleI GAGTC 4 cut(s) 69, 185, 714, 1005
PmaCI CACGTG 2 cut(s) 226, 319
PmlI CACGTG 2 cut(s) 226, 319
PpsI GAGTC 4 cut(s) 69, 185, 714, 1005
Ppu21I YACGTR 3 cut(s) 226, 319, 637
PscI ACATGT 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 832
PspCI CACGTG 2 cut(s) 226, 319
PspEI GGTNACC 1 cut(s) 676
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 4 cut(s) 70, 169, 183, 803
PsyI GACNNNGTC 2 cut(s) 116, 538
PvuII CAGCTG 1 cut(s) 765
RigI GGCCGGCC 1 cut(s) 170
RsaI GTAC 5 cut(s) 36, 431, 635, 647, 823
RsaNI GTAC 5 cut(s) 35, 430, 634, 646, 822
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 775
SaqAI TTAA 1 cut(s) 828
Sau3AI GATC 2 cut(s) 553, 739
Sau96I GGNCC 4 cut(s) 70, 169, 183, 803
ScaI AGTACT 1 cut(s) 431
SchI GAGTC 4 cut(s) 69, 185, 715, 1006
ScrFI CCNGG 2 cut(s) 650, 834
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 4 cut(s) 147, 634, 831, 1030
SinI GGWCC 2 cut(s) 70, 183
SmiMI CAYNNNNRTG 1 cut(s) 620
SnaBI TACGTA 1 cut(s) 637
Sse9I AATT 5 cut(s) 101, 412, 467, 916, 975
SspMI CTAG 3 cut(s) 50, 485, 732
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 648, 832
StyI CCWWGG 2 cut(s) 484, 725
TaaI ACNGT 1 cut(s) 1018
TaiI ACGT 4 cut(s) 228, 321, 542, 639
TaqI TCGA 2 cut(s) 15, 533
TaqII GACCGA 2 cut(s) 87, 705
TasI AATT 5 cut(s) 101, 412, 467, 916, 975
TatI WGTACW 1 cut(s) 429
TauI GCSGC 5 cut(s) 255, 365, 439, 446, 656
TfiI GAWTC 3 cut(s) 455, 565, 1034
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 2 cut(s) 167, 1023
TseFI GTSAC 2 cut(s) 580, 676
TseI GCWGC 5 cut(s) 322, 400, 403, 752, 765
Tsp45I GTSAC 2 cut(s) 580, 676
TspDTI ATGAA 1 cut(s) 857
TspRI CASTG 2 cut(s) 167, 1023
Tth111I GACNNNGTC 2 cut(s) 116, 538
VpaK11BI GGWCC 2 cut(s) 70, 183
VspI ATTAAT 1 cut(s) 828
XceI RCATGY 1 cut(s) 514
XmaJI CCTAGG 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 3 cut(s) 50, 485, 732
ZraI GACGTC 1 cut(s) 540
ZrmI AGTACT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.