Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009293

Physical Location & Seq

Genomic Coordinates Reverse (-)

8435068 .. 8437748

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G147600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGGAAATAGAAACATTGTGGAAAGAAGTTAGGGAGCTAAGTCTAGGGGATTCGGACAGAGTGGATCATTTGGAATGCCCACCCACCCCACTCCAATTCCTGAGAGACTTTGTTTGCCAAAACAAGCCCTGCATCATATCCAATGCCACCCTCCATTGGCCAGCTCTCTCCTCCTGGACCCATGATTCTTACCTCACTGGAGCTCTCTCCTCTGCGGACGTCTCCCTTCACCTCACCCCACATGGCCAAGCCGATGCCCTCGTCCCCTTGGATGGTTCCCTCTGCTTCTCCTCCGCTCATGTGCAGCGCATGCCCTTTCCTGAAGCTCTCAACCTCATTACCAACAATGAGTCCCCATCGAAACTGGTGGCCTATGCGCAGCAGCAGAACAACTGCTTTCTGTCGGAGTATTCTGCTTTAGCTGCAGATTGCGACCCCCATATCCCATGGGCCAGTGAGGCCCTTGGCTGCCTCCCTGATGCAGTCAACATGTGGATTGGCAACCATCTGTCGACAACATCATTTCATAAGGACCACTATGAAAATCTCTACGCTGTGGTGACGGGCCAGAAGCATTTCCTGCTCCTTCCTCCCACTGATGTGCATCGTATGTACATCCGCATGTACCCAGCTGCCCAATATTCATATTCTCATGACACCGGAGAGTTCAAACTGGAACTTGAGAAGCCAGATAGATACGTGCCATGGTGCAGTGTCGATCCTTACCCTTCTCCTGAGGATAGAGATAAGCAGCTCTCCAACTTTCCTTTGTATTTTGACGGTCCTAAGCCTTTTCGCTGTACTCTCAACCCTGGAGATATTCTATACTTGCCAAGTATGTGGTTTCATCACGTTAGACAAAGTCCAGATAGCAGAGGACGCACTATTGCTGTGAACTACTGGTATGATATGCAGTTTGATATCAAGTATGCTTACTTCAACTTCTTGCAATCAATTCATTGCCTATCAATTAAAACTCCAACACTACCCGTGACAATGCATGAGGATTCAGATTCTGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

343

Amino Acids

39.06

Weight (kDa)

5.18

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45880 AT3G45880
fragaria_vesca	FvH4_3g16420 FvH4_3g16420
malus_domestica	MD05G1209900.v1.1
prunus_persica	Prupe.4G147600_v2.0.a1 Prupe.4G147600_v2.0.a1
pyrus_communis	pycom05g19580
rosa_chinensis	RchiOBHm_Chr5g0027441
rosa_laevigata	RLG00000033019
rosa_multiflora	Rmu_sc0003500.1_g000047 Rmu_sc0007802.1_g000022
rosa_roxburghii	Rroxscaffold_1G00052090
rosa_rugosa	Rorug05G0098800 Rorug05G0098900 Rorug05G0099000 Rorug05G0099100
rosa_samantha	Rh5AG193100 Rh5BG190900 Rh5CG211300 Rh5DG192600
rosa_wichuraiana	Rw5G017600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc16I	TGCGCA	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	515
AciI	CCGC	3 cut(s)	218, 297, 622
AclWI	GGATC	2 cut(s)	75, 716
AcoI	YGGCCR	2 cut(s)	161, 247
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	3 cut(s)	617, 629, 805
AfiI	CCNNNNNNNGG	2 cut(s)	159, 275
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	673, 943
AjnI	CCWGG	2 cut(s)	176, 814
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	7 cut(s)	40, 167, 206, 329, 425, 635, 757
AluI	AGCT	7 cut(s)	40, 167, 206, 329, 425, 635, 757
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	2 cut(s)	102, 229
AlwI	GGATC	2 cut(s)	75, 716
AlwNI	CAGNNNCTG	1 cut(s)	1019
AoxI	GGCC	6 cut(s)	161, 247, 372, 453, 462, 568
ApeKI	GCWGC	7 cut(s)	307, 382, 385, 425, 471, 635, 754
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	312, 382
AspS9I	GGNCC	6 cut(s)	180, 453, 463, 535, 568, 785
AsuHPI	GGTGA	3 cut(s)	224, 229, 574
AvaII	GGWCC	3 cut(s)	180, 535, 785
AxyI	CCTNAGG	1 cut(s)	738
BalI	TGGCCA	2 cut(s)	163, 249
BanII	GRGCYC	1 cut(s)	208
BarI	GAAGNNNNNNTAC	2 cut(s)	923, 955
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	7 cut(s)	319, 394, 397, 412, 458, 622, 766
BccI	CCATC	3 cut(s)	269, 367, 516
BciT130I	CCWGG	2 cut(s)	178, 816
BcoDI	GTCTC	2 cut(s)	102, 229
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	7 cut(s)	308, 383, 386, 426, 472, 636, 755
BlsI	GCNGC	7 cut(s)	309, 384, 387, 427, 473, 637, 756
Bme1390I	CCNGG	2 cut(s)	178, 816
Bme18I	GGWCC	3 cut(s)	180, 535, 785
BmgT120I	GGNCC	6 cut(s)	180, 453, 463, 535, 568, 785
BmiI	GGNNCC	2 cut(s)	182, 280
BmrFI	CCNGG	2 cut(s)	178, 816
BmsI	GCATC	5 cut(s)	144, 247, 472, 616, 1012
BpmI	CTGGAG	2 cut(s)	222, 837
Bpu10I	CCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	270, 449, 466, 707, 814
BsaWI	WCCGGW	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 275
Bse1I	ACTGG	5 cut(s)	205, 372, 456, 681, 908
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	961
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	178, 816
BseDI	CCNNGG	5 cut(s)	270, 449, 466, 707, 814
BseGI	GGATG	2 cut(s)	280, 618
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	2 cut(s)	159, 275
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	2 cut(s)	95, 729
BseNI	ACTGG	5 cut(s)	205, 372, 456, 681, 908
BseRI	GAGGAG	3 cut(s)	163, 202, 283
BseXI	GCAGC	7 cut(s)	319, 394, 397, 412, 458, 622, 766
BseYI	CCCAGC	1 cut(s)	631
BsgI	GTGCAG	2 cut(s)	326, 733
BshFI	GGCC	6 cut(s)	163, 249, 374, 455, 464, 570
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	2 cut(s)	251, 340
BslI	CCNNNNNNNGG	2 cut(s)	159, 275
BsmAI	GTCTC	2 cut(s)	102, 229
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	2 cut(s)	251, 340
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	6 cut(s)	163, 249, 374, 455, 464, 570
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	67, 721
Bsp19I	CCATGG	2 cut(s)	449, 707
BspACI	CCGC	3 cut(s)	218, 297, 622
BspANI	GGCC	6 cut(s)	163, 249, 374, 455, 464, 570
BspCNI	CTCAG	2 cut(s)	96, 730
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	182, 280
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	2 cut(s)	75, 716
BsrBI	CCGCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	961
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	5 cut(s)	205, 372, 456, 681, 908
BssECI	CCNNGG	5 cut(s)	270, 449, 466, 707, 814
BssMI	GATC	2 cut(s)	67, 721
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	4 cut(s)	270, 449, 466, 707
Bst2UI	CCWGG	2 cut(s)	178, 816
Bst4CI	ACNGT	1 cut(s)	785
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	2 cut(s)	313, 583
BstAUI	TGTACA	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	165, 314
BstDEI	CTNAG	4 cut(s)	41, 104, 738, 789
BstDSI	CCRYGG	2 cut(s)	449, 707
BstF5I	GGATG	2 cut(s)	280, 618
BstHHI	GCGC	2 cut(s)	312, 382
BstKTI	GATC	2 cut(s)	70, 724
BstMAI	GTCTC	2 cut(s)	102, 229
BstMBI	GATC	2 cut(s)	67, 721
BstMWI	GCNNNNNNNGC	5 cut(s)	313, 425, 461, 583, 882
BstNI	CCWGG	2 cut(s)	178, 816
BstNSI	RCATGY	3 cut(s)	316, 496, 628
BstSCI	CCNGG	2 cut(s)	176, 814
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	7 cut(s)	319, 394, 397, 412, 458, 622, 766
BstXI	CCANNNNNNTGG	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	6 cut(s)	163, 249, 374, 455, 464, 570
BtgI	CCRYGG	2 cut(s)	449, 707
BtsCI	GGATG	2 cut(s)	280, 618
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	4 cut(s)	198, 463, 597, 721
Cac8I	GCNNGC	2 cut(s)	165, 314
CaiI	CAGNNNCTG	1 cut(s)	1019
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	2 cut(s)	312, 382
Cfr13I	GGNCC	6 cut(s)	180, 453, 463, 535, 568, 785
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	3 cut(s)	616, 628, 804
CviQI	GTAC	3 cut(s)	616, 628, 804
DdeI	CTNAG	4 cut(s)	41, 104, 738, 789
DpnI	GATC	2 cut(s)	69, 723
DpnII	GATC	2 cut(s)	67, 721
EaeI	YGGCCR	2 cut(s)	161, 247
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	4 cut(s)	270, 449, 466, 707
Eco24I	GRGCYC	1 cut(s)	208
Eco32I	GATATC	1 cut(s)	925
Eco47I	GGWCC	3 cut(s)	180, 535, 785
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	176, 814
EcoRV	GATATC	1 cut(s)	925
EcoT14I	CCWWGG	4 cut(s)	270, 449, 466, 707
EcoT22I	ATGCAT	2 cut(s)	1005, 1027
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	4 cut(s)	270, 449, 466, 707
Esp3I	CGTCTC	1 cut(s)	229
FaqI	GGGAC	2 cut(s)	251, 340
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	7 cut(s)	308, 383, 386, 426, 472, 636, 755
FokI	GGATG	2 cut(s)	287, 605
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	7 cut(s)	308, 383, 386, 426, 472, 636, 755
FspBI	CTAG	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	2 cut(s)	311, 381
GluI	GCNGC	7 cut(s)	308, 383, 386, 426, 472, 636, 755
GsaI	CCCAGC	1 cut(s)	635
GsuI	CTGGAG	2 cut(s)	222, 837
HaeIII	GGCC	6 cut(s)	163, 249, 374, 455, 464, 570
HapII	CCGG	1 cut(s)	663
HgaI	GACGC	1 cut(s)	891
HhaI	GCGC	2 cut(s)	312, 382
Hin1I	GRCGYC	1 cut(s)	222
Hin6I	GCGC	2 cut(s)	310, 380
HinP1I	GCGC	2 cut(s)	310, 380
HincII	GTYRAC	2 cut(s)	490, 516
HindII	GTYRAC	2 cut(s)	490, 516
HinfI	GANTC	5 cut(s)	53, 188, 353, 1010, 1016
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	3 cut(s)	224, 229, 574
Hpy166II	GTNNAC	3 cut(s)	490, 516, 898
Hpy188I	TCNGA	4 cut(s)	58, 409, 1015, 1021
Hpy188III	TCNNGA	5 cut(s)	103, 323, 656, 737, 869
Hpy8I	GTNNAC	3 cut(s)	490, 516, 898
HpyAV	CCTTC	3 cut(s)	239, 599, 741
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	3 cut(s)	222, 702, 855
HpyF10VI	GCNNNNNNNGC	5 cut(s)	313, 425, 461, 583, 882
HpyF3I	CTNAG	4 cut(s)	41, 104, 738, 789
HpySE526I	ACGT	3 cut(s)	222, 702, 855
Hsp92I	GRCGYC	1 cut(s)	222
HspAI	GCGC	2 cut(s)	310, 380
Kzo9I	GATC	2 cut(s)	67, 721
LmnI	GCTCC	3 cut(s)	37, 203, 591
Lsp1109I	GCAGC	7 cut(s)	319, 394, 397, 412, 458, 622, 766
LweI	GCATC	5 cut(s)	144, 247, 472, 616, 1012
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	222, 702, 855
MaeIII	GTNAC	2 cut(s)	562, 994
MalI	GATC	2 cut(s)	69, 723
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	2 cut(s)	67, 721
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	2 cut(s)	163, 249
MluCI	AATT	3 cut(s)	98, 957, 972
MluNI	TGGCCA	2 cut(s)	163, 249
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	3 cut(s)	387, 786, 1007
Mox20I	TGGCCA	2 cut(s)	163, 249
Mph1103I	ATGCAT	2 cut(s)	1005, 1027
MroXI	GAANNNNTTC	1 cut(s)	578
MscI	TGGCCA	2 cut(s)	163, 249
MseI	TTAA	1 cut(s)	975
MslI	CAYNNNNRTG	2 cut(s)	602, 623
Msp20I	TGGCCA	2 cut(s)	163, 249
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	2 cut(s)	178, 816
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	178, 816
MwoI	GCNNNNNNNGC	5 cut(s)	313, 425, 461, 583, 882
NcoI	CCATGG	2 cut(s)	449, 707
NdeII	GATC	2 cut(s)	67, 721
NlaIV	GGNNCC	2 cut(s)	182, 280
NmuCI	GTSAC	2 cut(s)	562, 994
NsbI	TGCGCA	1 cut(s)	381
NsiI	ATGCAT	2 cut(s)	1005, 1027
NspI	RCATGY	3 cut(s)	316, 496, 628
OliI	CACNNNNGTG	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	316
PagI	TCATGA	1 cut(s)	655
PciI	ACATGT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	4 cut(s)	53, 188, 1010, 1016
PflFI	GACNNNGTC	1 cut(s)	864
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	7 cut(s)	309, 384, 387, 427, 473, 637, 756
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	703
PscI	ACATGT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	176, 814
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	2 cut(s)	176, 814
PspN4I	GGNNCC	2 cut(s)	182, 280
PspPI	GGNCC	6 cut(s)	180, 453, 463, 535, 568, 785
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	1019
PsyI	GACNNNGTC	1 cut(s)	864
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	3 cut(s)	617, 629, 805
RsaNI	GTAC	3 cut(s)	616, 628, 804
RseI	CAYNNNNRTG	2 cut(s)	602, 623
SacI	GAGCTC	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	975
SatI	GCNGC	7 cut(s)	308, 383, 386, 426, 472, 636, 755
Sau3AI	GATC	2 cut(s)	67, 721
Sau96I	GGNCC	6 cut(s)	180, 453, 463, 535, 568, 785
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	178, 816
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	5 cut(s)	144, 247, 472, 616, 1012
SfcI	CTRYAG	1 cut(s)	426
SfiI	GGCCNNNNNGGCC	1 cut(s)	461
SinI	GGWCC	3 cut(s)	180, 535, 785
SmiMI	CAYNNNNRTG	2 cut(s)	602, 623
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	3 cut(s)	98, 957, 972
SsiI	CCGC	3 cut(s)	218, 297, 622
SspI	AATATT	1 cut(s)	644
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	176, 814
StyI	CCWWGG	4 cut(s)	270, 449, 466, 707
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	3 cut(s)	225, 705, 858
TaqI	TCGA	3 cut(s)	362, 515, 720
TasI	AATT	3 cut(s)	98, 957, 972
TatI	WGTACW	2 cut(s)	615, 803
TfiI	GAWTC	4 cut(s)	53, 188, 1010, 1016
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	4 cut(s)	205, 463, 604, 721
TseFI	GTSAC	2 cut(s)	562, 994
TseI	GCWGC	7 cut(s)	307, 382, 385, 425, 471, 635, 754
Tsp45I	GTSAC	2 cut(s)	562, 994
TspDTI	ATGAA	5 cut(s)	518, 558, 636, 839, 950
TspRI	CASTG	4 cut(s)	205, 463, 604, 721
Tth111I	GACNNNGTC	1 cut(s)	864
VpaK11BI	GGWCC	3 cut(s)	180, 535, 785
XceI	RCATGY	3 cut(s)	316, 496, 628
XmiI	GTMKAC	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	223
Zsp2I	ATGCAT	2 cut(s)	1005, 1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.