Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009293

Physical Location & Seq

Genomic Coordinates Forward (+)

22483708 .. 22485144

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGGAAATAGAGGCATTGTGGAAAGAAGTAAGGGAGCTAAGTCTAGGCGAGTCGGGAAGAGTGGAGCGGTTGGAGTTCCCACCCACCCCTCTCCAATTCCTTAGAGATTATGTTAACCAAAACAAGCCCTGCATTATATCCAATGCCACCCTCCACTGGCCCGCCCTCTCCTCCTGGACCGACGATTCTTATCTCACTGAAGCCCTCTCCTCTGCTGACATTTCCCTTCACCTTACTCCGCACGGCCAGGCTGATGCCCTCGTCCCCTTGGATGGTTCTCTTTGCTTTGCGTCTGCTCACGTGCAGCGCATGCCCTTCCCAAAAGCTCTCAGCCTCATCACCAACAATGACTCCCAATCGAAACTGGTGGCCTATGCGCAGCAGCAGAACAACTGCTTTCCATCAGAGTACTCGGCTTTAGCTGGGGATTGTGACCCCCATATCCCATGGGCCAGTGAGGCCCTTGGCTGCCTCCCTGATGCAGTCAACATGTGGATTGGCAACCATCTGTCTACAACATCGTTTCATAAGGACCACTATGAGAATCTCTATGCTGTTGTGACTGGGCAGAAGCATTTCCTGCTCCTTCCTCCCACTGATGTGCATCGAATGTATATCCGCAACTACCAATCTGCCCAATATGCGTATTCTCATGACACTGGAGAGTTCACGTTGGAACTGGAGAAGCCAGACAGATATGTGCCTTGGTGTAGTGTCGATCCTTACCCTTCTCCTGAGGACAGGGATAAGCAGCTATCTGACTTTCCTTTGTATTTCGACGGTCCTAAGCCCTTTCACTGTACTGTCAACCCTGGAGAGATTCTTTACCTGCCAAGCATGTGGTTTCATCACGTTAGACAAACTCCAGATAGCAGAGGACGCACTATTGCTGTGAACTACTGGTATGATATGCAGTATGATATCAAGTATGCTTACTTCAACTTTTTGCAATCAATTCATTGCCTATCCGTTAATGCTCCAACACTGGCTGAGAAAGTGTATGAGGATTCAGATTCAGATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

343

Amino Acids

39.08

Weight (kDa)

4.96

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45880 AT3G45880
fragaria_vesca	FvH4_3g16420 FvH4_3g16420
malus_domestica	MD05G1209900.v1.1
prunus_persica	Prupe.4G147600_v2.0.a1 Prupe.4G147600_v2.0.a1
pyrus_communis	pycom05g19580
rosa_chinensis	RchiOBHm_Chr5g0027441
rosa_laevigata	RLG00000033019
rosa_multiflora	Rmu_sc0003500.1_g000047 Rmu_sc0007802.1_g000022
rosa_roxburghii	Rroxscaffold_1G00052090
rosa_rugosa	Rorug05G0098800 Rorug05G0098900 Rorug05G0099000 Rorug05G0099100
rosa_samantha	Rh5AG193100 Rh5BG190900 Rh5CG211300 Rh5DG192600
rosa_wichuraiana	Rw5G017600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	381
Acc36I	ACCTGC	1 cut(s)	840
AccBSI	CCGCTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	515
AciI	CCGC	4 cut(s)	70, 165, 242, 622
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	304
AfaI	GTAC	2 cut(s)	413, 805
AfiI	CCNNNNNNNGG	2 cut(s)	159, 275
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	1 cut(s)	943
AjnI	CCWGG	3 cut(s)	176, 249, 814
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	4 cut(s)	40, 329, 425, 757
AluI	AGCT	4 cut(s)	40, 329, 425, 757
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	5 cut(s)	161, 247, 372, 453, 462
ApeKI	GCWGC	5 cut(s)	307, 382, 385, 471, 754
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	2 cut(s)	312, 382
AspS9I	GGNCC	6 cut(s)	162, 180, 453, 463, 535, 785
AsuHPI	GGTGA	2 cut(s)	224, 334
AvaII	GGWCC	3 cut(s)	180, 535, 785
AxyI	CCTNAGG	1 cut(s)	738
BarI	GAAGNNNNNNTAC	2 cut(s)	923, 955
BbrPI	CACGTG	1 cut(s)	304
BbvI	GCAGC	5 cut(s)	319, 394, 397, 458, 766
BccI	CCATC	3 cut(s)	269, 412, 516
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	3 cut(s)	178, 251, 816
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	840
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	5 cut(s)	308, 383, 386, 472, 755
BlsI	GCNGC	5 cut(s)	309, 384, 387, 473, 756
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	3 cut(s)	178, 251, 816
Bme18I	GGWCC	3 cut(s)	180, 535, 785
BmgT120I	GGNCC	6 cut(s)	162, 180, 453, 463, 535, 785
BmrFI	CCNGG	3 cut(s)	178, 251, 816
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	247, 472, 616
BmuI	ACTGGG	1 cut(s)	576
BpmI	CTGGAG	4 cut(s)	684, 704, 837, 852
Bpu10I	CCTNAGC	1 cut(s)	789
BsaAI	YACGTR	1 cut(s)	304
BsaBI	GATNNNNATC	2 cut(s)	192, 606
BsaJI	CCNNGG	5 cut(s)	270, 449, 466, 707, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 275
Bse1I	ACTGG	8 cut(s)	164, 372, 456, 571, 667, 687, 908, 993
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	961
Bse8I	GATNNNNATC	2 cut(s)	192, 606
BseBI	CCWGG	3 cut(s)	178, 251, 816
BseDI	CCNNGG	5 cut(s)	270, 449, 466, 707, 814
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	2 cut(s)	192, 606
BseLI	CCNNNNNNNGG	2 cut(s)	159, 275
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	3 cut(s)	346, 729, 984
BseNI	ACTGG	8 cut(s)	164, 372, 456, 571, 667, 687, 908, 993
BseRI	GAGGAG	2 cut(s)	163, 202
BseXI	GCAGC	5 cut(s)	319, 394, 397, 458, 766
BseYI	CCCAGC	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	326
BshFI	GGCC	5 cut(s)	163, 249, 374, 455, 464
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	159, 275
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	5 cut(s)	163, 249, 374, 455, 464
Bsp143I	GATC	1 cut(s)	721
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	4 cut(s)	70, 165, 242, 622
BspANI	GGCC	5 cut(s)	163, 249, 374, 455, 464
BspCNI	CTCAG	3 cut(s)	345, 730, 985
BspHI	TCATGA	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	840
BspPI	GGATC	1 cut(s)	716
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	961
BsrI	ACTGG	8 cut(s)	164, 372, 456, 571, 667, 687, 908, 993
BssECI	CCNNGG	5 cut(s)	270, 449, 466, 707, 814
BssMI	GATC	1 cut(s)	721
BssT1I	CCWWGG	4 cut(s)	270, 449, 466, 707
Bst2UI	CCWGG	3 cut(s)	178, 251, 816
Bst4CI	ACNGT	3 cut(s)	785, 803, 808
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	2 cut(s)	313, 583
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	165, 314
BstDEI	CTNAG	6 cut(s)	41, 104, 332, 738, 789, 993
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	280
BstHHI	GCGC	2 cut(s)	312, 382
BstKTI	GATC	1 cut(s)	724
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	5 cut(s)	313, 461, 583, 644, 882
BstNI	CCWGG	3 cut(s)	178, 251, 816
BstNSI	RCATGY	3 cut(s)	316, 496, 844
BstSCI	CCNGG	3 cut(s)	176, 249, 814
BstV1I	GCAGC	5 cut(s)	319, 394, 397, 458, 766
BstXI	CCANNNNNNTGG	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	5 cut(s)	163, 249, 374, 455, 464
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	7 cut(s)	157, 198, 463, 597, 660, 799, 986
BveI	ACCTGC	1 cut(s)	840
Cac8I	GCNNGC	2 cut(s)	165, 314
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	2 cut(s)	312, 382
Cfr13I	GGNCC	6 cut(s)	162, 180, 453, 463, 535, 785
CseI	GACGC	2 cut(s)	282, 891
Csp6I	GTAC	2 cut(s)	412, 804
CviAII	CATG	5 cut(s)	313, 450, 493, 656, 841
CviQI	GTAC	2 cut(s)	412, 804
DdeI	CTNAG	6 cut(s)	41, 104, 332, 738, 789, 993
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	4 cut(s)	270, 449, 466, 707
Eco32I	GATATC	1 cut(s)	925
Eco47I	GGWCC	3 cut(s)	180, 535, 785
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	304
Eco81I	CCTNAGG	1 cut(s)	738
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	176, 249, 814
EcoRV	GATATC	1 cut(s)	925
EcoT14I	CCWWGG	4 cut(s)	270, 449, 466, 707
ErhI	CCWWGG	4 cut(s)	270, 449, 466, 707
FaeI	CATG	5 cut(s)	316, 453, 496, 659, 844
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	5 cut(s)	312, 449, 492, 655, 840
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	5 cut(s)	308, 383, 386, 472, 755
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	308, 383, 386, 472, 755
FspBI	CTAG	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	2 cut(s)	311, 381
GluI	GCNGC	5 cut(s)	308, 383, 386, 472, 755
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	4 cut(s)	684, 704, 837, 852
HaeIII	GGCC	5 cut(s)	163, 249, 374, 455, 464
HgaI	GACGC	2 cut(s)	282, 891
HhaI	GCGC	2 cut(s)	312, 382
Hin1II	CATG	5 cut(s)	316, 453, 496, 659, 844
Hin6I	GCGC	2 cut(s)	310, 380
HinP1I	GCGC	2 cut(s)	310, 380
HincII	GTYRAC	3 cut(s)	118, 490, 811
HindII	GTYRAC	3 cut(s)	118, 490, 811
HinfI	GANTC	8 cut(s)	53, 188, 353, 547, 823, 1010, 1016, 1022
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	2 cut(s)	224, 334
Hpy166II	GTNNAC	6 cut(s)	118, 490, 516, 672, 811, 898
Hpy188I	TCNGA	4 cut(s)	409, 763, 1015, 1021
Hpy188III	TCNNGA	4 cut(s)	57, 656, 737, 869
Hpy8I	GTNNAC	6 cut(s)	118, 490, 516, 672, 811, 898
Hpy99I	CGWCG	2 cut(s)	188, 785
HpyAV	CCTTC	4 cut(s)	239, 328, 599, 741
HpyCH4III	ACNGT	3 cut(s)	785, 803, 808
HpyCH4IV	ACGT	3 cut(s)	303, 674, 855
HpyCH4V	TGCA	6 cut(s)	135, 307, 485, 607, 916, 952
HpyF10VI	GCNNNNNNNGC	5 cut(s)	313, 461, 583, 644, 882
HpyF3I	CTNAG	6 cut(s)	41, 104, 332, 738, 789, 993
HpySE526I	ACGT	3 cut(s)	303, 674, 855
Hsp92II	CATG	5 cut(s)	316, 453, 496, 659, 844
HspAI	GCGC	2 cut(s)	310, 380
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	4 cut(s)	37, 67, 591, 985
Lsp1109I	GCAGC	5 cut(s)	319, 394, 397, 458, 766
LweI	GCATC	3 cut(s)	247, 472, 616
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	303, 674, 855
MaeIII	GTNAC	2 cut(s)	434, 562
MalI	GATC	1 cut(s)	723
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	1 cut(s)	721
MboII	GAAGA	1 cut(s)	72
MluCI	AATT	2 cut(s)	98, 957
MlyI	GAGTC	2 cut(s)	62, 347
MmeI	TCCRAC	3 cut(s)	54, 657, 1007
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	2 cut(s)	117, 975
MslI	CAYNNNNRTG	1 cut(s)	602
MspR9I	CCNGG	3 cut(s)	178, 251, 816
MvaI	CCWGG	3 cut(s)	178, 251, 816
MwoI	GCNNNNNNNGC	5 cut(s)	313, 461, 583, 644, 882
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	5 cut(s)	316, 453, 496, 659, 844
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	2 cut(s)	434, 562
NsbI	TGCGCA	1 cut(s)	381
NspI	RCATGY	3 cut(s)	316, 496, 844
OliI	CACNNNNGTG	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	316
PagI	TCATGA	1 cut(s)	655
PciI	ACATGT	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	6 cut(s)	188, 547, 823, 1010, 1016, 1022
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	309, 384, 387, 473, 756
PleI	GAGTC	2 cut(s)	61, 347
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
PpsI	GAGTC	2 cut(s)	61, 347
Ppu21I	YACGTR	1 cut(s)	304
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	3 cut(s)	176, 249, 814
PspCI	CACGTG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	3 cut(s)	176, 249, 814
PspPI	GGNCC	6 cut(s)	162, 180, 453, 463, 535, 785
RsaI	GTAC	2 cut(s)	413, 805
RsaNI	GTAC	2 cut(s)	412, 804
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	117, 975
SatI	GCNGC	5 cut(s)	308, 383, 386, 472, 755
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	6 cut(s)	162, 180, 453, 463, 535, 785
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	2 cut(s)	62, 347
ScrFI	CCNGG	3 cut(s)	178, 251, 816
SetI	ASST	9 cut(s)	42, 237, 306, 331, 427, 677, 759, 834, 858
SfaNI	GCATC	3 cut(s)	247, 472, 616
SfiI	GGCCNNNNNGGCC	1 cut(s)	461
SinI	GGWCC	3 cut(s)	180, 535, 785
SmiMI	CAYNNNNRTG	1 cut(s)	602
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	2 cut(s)	98, 957
SsiI	CCGC	4 cut(s)	70, 165, 242, 622
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	176, 249, 814
StyI	CCWWGG	4 cut(s)	270, 449, 466, 707
TaaI	ACNGT	3 cut(s)	785, 803, 808
TaiI	ACGT	3 cut(s)	306, 677, 858
TaqI	TCGA	4 cut(s)	362, 610, 720, 780
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	98, 957
TatI	WGTACW	2 cut(s)	411, 803
TfiI	GAWTC	6 cut(s)	188, 547, 823, 1010, 1016, 1022
Tru1I	TTAA	2 cut(s)	117, 975
Tru9I	TTAA	2 cut(s)	117, 975
TscAI	CASTG	7 cut(s)	164, 205, 463, 604, 667, 806, 993
TseFI	GTSAC	2 cut(s)	434, 562
TseI	GCWGC	5 cut(s)	307, 382, 385, 471, 754
Tsp45I	GTSAC	2 cut(s)	434, 562
TspDTI	ATGAA	3 cut(s)	518, 839, 950
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	7 cut(s)	164, 205, 463, 604, 667, 806, 993
VpaK11BI	GGWCC	3 cut(s)	180, 535, 785
XceI	RCATGY	3 cut(s)	316, 496, 844
XmiI	GTMKAC	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.