Rh5AG193100

JmjC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009293
Physical Location & Seq
Reverse (-)
22401444 .. 22404233
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG193100.1

Sequence Viewer

Length: 1059 bp
ATGGAGGGAAAAATCGAGACATTATGGAACGAAGTGCGGGAGCTCAATCTCGGCACCTCCGGCGAGCTGGACCGACTCGATTTCCCGCCAACTCCACTCCAGTTCCTCCGAGACTTCGTCTCCCAAAACAAGCCCTGCATCATCTCCAACGCCACCCATCACTGGCCGGCCCTCACCCGCTGGACCTCCGACTCCTACCTCACCTCCGCCCTCTCCTCCTCCCGCGTGTCCCTCCACCTCACCCCTCACGGCCGCGCCGACGCCCTCGTCCCCTCCCCTTCCTCCTCCCTCTGCTTCGCCTCCGCTCACGTGCAGCGCACGCCCTTCCCCGAAGCCCTCCGCCTCATCACGGCCGCCAAACACGACGCGTCGTCGTTCGTGGCCTACGCGCAGCAGCAGAACAATTGCTTCCCCTCCGAGTACTCGCCGCTGGCGGCGGACTGCGATTCTCACATCCAATTCGCCACCGAAGCCCTAGGTTGCCGACCCGAGGCCGTCAACATGTGGATTGGGGACGAGCGCTCGACGACGTCGTTTCACAAGGATCACTACGAGAATCTCTACGCTGTGGTCACGGGACAGAAGCATTTCCTCCTCCTCCCTCCCACCGATGTGCATCGGATGTACGTAAGGGAGTACCCGGCCGCTCAGTATTCGTATTCTCCGGTCACCGGAGAGTTTGAGCTGGAAATGGAGAGTCCGGCTAGGTCTGTGCCTTGGTCTAGTGTCGATCCTTACCCTGCTCCTGAGGACAGAGAAGAACAGCTCTCCAAGTTCCCTTTGTTCTTCAATGGGCCTAGGCCATTTTGCTGTACGATTAATCCAGGAGAGATGCTTTACTTGCCAAGTATGTGGTTTCATCATGTTAGGCAAAGCCCAGATAGCAGAGGAAGAACTATTGCTGTAAATTACTGGTATGACATGCAGTTTGATATCAAGTATGCGTACTTCAACTTCTTGCAATCAATTCAATGCCCACCGATTGAGAGTCAAACGCTGGCCGAGACAGTGCAGGAGGATTTAGATTCTGATGCATTGGAGAAGACTGAAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

352

Amino Acids

40.08

Weight (kDa)

4.99

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 32 - 311 4.1e-77 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 53
AccBSI CCGCTC 2 cut(s) 305, 647
AccII CGCG 4 cut(s) 225, 255, 368, 389
AclWI GGATC 2 cut(s) 552, 725
AcoI YGGCCR 5 cut(s) 164, 250, 351, 642, 999
AcvI CACGTG 1 cut(s) 310
AcyI GRCGYC 2 cut(s) 261, 530
AfaI GTAC 5 cut(s) 422, 626, 638, 814, 947
AfeI AGCGCT 1 cut(s) 521
AfiI CCNNNNNNNGG 4 cut(s) 162, 349, 490, 671
AflIII ACRYGT 2 cut(s) 366, 501
AgsI TTSAA 3 cut(s) 790, 952, 971
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 823
AleI CACNNNNGTG 1 cut(s) 611
AluBI AGCT 4 cut(s) 43, 67, 685, 766
AluI AGCT 4 cut(s) 43, 67, 685, 766
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 4 cut(s) 11, 105, 124, 998
AlwI GGATC 2 cut(s) 552, 725
Ama87I CYCGRG 1 cut(s) 488
Aor51HI AGCGCT 1 cut(s) 521
ApeKI GCWGC 3 cut(s) 313, 391, 394
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
AseI ATTAAT 1 cut(s) 819
Asp700I GAANNNNTTC 1 cut(s) 587
AspA2I CCTAGG 2 cut(s) 475, 797
AspLEI GCGC 4 cut(s) 257, 318, 391, 522
AspS9I GGNCC 4 cut(s) 70, 169, 183, 794
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 4 cut(s) 166, 193, 232, 661
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 2 cut(s) 70, 183
AvrII CCTAGG 2 cut(s) 475, 797
AxyI CCTNAGG 1 cut(s) 747
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 45
BarI GAAGNNNNNNTAC 4 cut(s) 932, 938, 964, 970
BbrPI CACGTG 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 1049
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 325, 403, 406
BccI CCATC 1 cut(s) 165
BceAI ACGGC 3 cut(s) 265, 366, 479
BciT130I CCWGG 1 cut(s) 825
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 4 cut(s) 11, 105, 124, 998
BfaI CTAG 4 cut(s) 476, 705, 723, 798
BfoI RGCGCY 1 cut(s) 523
BisI GCNGC 8 cut(s) 253, 314, 354, 392, 395, 428, 435, 645
BlnI CCTAGG 2 cut(s) 475, 797
BlsI GCNGC 8 cut(s) 254, 315, 355, 393, 396, 429, 436, 646
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 641, 825
Bme18I GGWCC 2 cut(s) 70, 183
BmeRI GACNNNNNGTC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 4 cut(s) 70, 169, 183, 794
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 641, 825
BmsI GCATC 4 cut(s) 147, 625, 822, 1021
BpiI GAAGAC 1 cut(s) 1049
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 641
BsaAI YACGTR 2 cut(s) 310, 628
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 2 cut(s) 261, 530
BsaJI CCNNGG 4 cut(s) 475, 489, 716, 797
BsaWI WCCGGW 2 cut(s) 664, 671
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 349, 490, 671
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 3 cut(s) 100, 167, 917
Bse21I CCTNAGG 1 cut(s) 747
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 1 cut(s) 825
BseDI CCNNGG 4 cut(s) 475, 489, 716, 797
BseGI GGATG 2 cut(s) 453, 627
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 4 cut(s) 162, 349, 490, 671
BseMII CTCAG 2 cut(s) 662, 738
BseNI ACTGG 3 cut(s) 100, 167, 917
BseRI GAGGAG 5 cut(s) 205, 208, 274, 584, 587
BseX3I CGGCCG 3 cut(s) 250, 351, 642
BseXI GCAGC 3 cut(s) 325, 403, 406
BsgI GTGCAG 2 cut(s) 332, 1031
Bsh1236I CGCG 4 cut(s) 225, 255, 368, 389
Bsh1285I CGRYCG 3 cut(s) 253, 354, 645
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 3 cut(s) 253, 354, 645
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 6 cut(s) 60, 167, 641, 665, 672, 701
BslFI GGGAC 4 cut(s) 214, 254, 527, 591
BslI CCNNNNNNNGG 4 cut(s) 162, 349, 490, 671
BsmAI GTCTC 4 cut(s) 11, 105, 124, 998
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 4 cut(s) 214, 254, 527, 591
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 544, 730
BspCNI CTCAG 2 cut(s) 661, 739
BspFNI CGCG 4 cut(s) 225, 255, 368, 389
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 552, 725
BspT107I GGYRCC 1 cut(s) 53
BsrBI CCGCTC 2 cut(s) 305, 647
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 3 cut(s) 100, 167, 917
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 4 cut(s) 475, 489, 716, 797
BssMI GATC 2 cut(s) 544, 730
BssNI GRCGYC 2 cut(s) 261, 530
BssT1I CCWWGG 3 cut(s) 475, 716, 797
Bst2UI CCWGG 1 cut(s) 825
Bst4CI ACNGT 1 cut(s) 1009
BstACI GRCGYC 2 cut(s) 261, 530
BstBAI YACGTR 2 cut(s) 310, 628
BstC8I GCNNGC 5 cut(s) 65, 168, 320, 432, 999
BstDEI CTNAG 2 cut(s) 648, 747
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 2 cut(s) 453, 627
BstFNI CGCG 4 cut(s) 225, 255, 368, 389
BstH2I RGCGCY 1 cut(s) 523
BstHHI GCGC 4 cut(s) 257, 318, 391, 522
BstKTI GATC 2 cut(s) 547, 733
BstMAI GTCTC 4 cut(s) 11, 105, 124, 998
BstMBI GATC 2 cut(s) 544, 730
BstMCI CGRYCG 3 cut(s) 253, 354, 645
BstMWI GCNNNNNNNGC 5 cut(s) 60, 319, 470, 841, 882
BstNI CCWGG 1 cut(s) 825
BstNSI RCATGY 2 cut(s) 505, 925
BstPI GGTNACC 1 cut(s) 667
BstSCI CCNGG 2 cut(s) 639, 823
BstSNI TACGTA 1 cut(s) 628
BstUI CGCG 4 cut(s) 225, 255, 368, 389
BstV1I GCAGC 3 cut(s) 325, 403, 406
BstV2I GAAGAC 1 cut(s) 1049
BstXI CCANNNNNNTGG 1 cut(s) 852
BstZI CGGCCG 3 cut(s) 250, 351, 642
Bsu36I CCTNAGG 1 cut(s) 747
BtsCI GGATG 2 cut(s) 453, 627
BtsIMutI CAGTG 2 cut(s) 160, 1014
Cac8I GCNNGC 5 cut(s) 65, 168, 320, 432, 999
CfoI GCGC 4 cut(s) 257, 318, 391, 522
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 4 cut(s) 70, 169, 183, 794
CseI GACGC 3 cut(s) 269, 357, 374
Csp6I GTAC 5 cut(s) 421, 625, 637, 813, 946
CviAII CATG 3 cut(s) 502, 863, 922
CviQI GTAC 5 cut(s) 421, 625, 637, 813, 946
DdeI CTNAG 2 cut(s) 648, 747
DpnI GATC 2 cut(s) 546, 732
DpnII GATC 2 cut(s) 544, 730
DrdI GACNNNNNNGTC 1 cut(s) 266
DriI GACNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 5 cut(s) 164, 250, 351, 642, 999
EagI CGGCCG 3 cut(s) 250, 351, 642
Eam1105I GACNNNNNGTC 1 cut(s) 370
EciI GGCGGA 3 cut(s) 196, 329, 452
Ecl136II GAGCTC 1 cut(s) 43
EclXI CGGCCG 3 cut(s) 250, 351, 642
Eco105I TACGTA 1 cut(s) 628
Eco130I CCWWGG 3 cut(s) 475, 716, 797
Eco24I GRGCYC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 934
Eco47I GGWCC 2 cut(s) 70, 183
Eco47III AGCGCT 1 cut(s) 521
Eco52I CGGCCG 3 cut(s) 250, 351, 642
Eco53kI GAGCTC 1 cut(s) 43
Eco72I CACGTG 1 cut(s) 310
Eco81I CCTNAGG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 488
Eco91I GGTNACC 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 823
EcoRV GATATC 1 cut(s) 934
EcoT14I CCWWGG 3 cut(s) 475, 716, 797
EcoT22I ATGCAT 1 cut(s) 1036
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 3 cut(s) 475, 716, 797
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 3 cut(s) 505, 866, 925
FaiI YATR 7 cut(s) 25, 503, 851, 864, 918, 923, 942
FaqI GGGAC 4 cut(s) 214, 254, 527, 591
FatI CATG 3 cut(s) 501, 862, 921
FauI CCCGC 4 cut(s) 30, 93, 185, 230
Fnu4HI GCNGC 8 cut(s) 253, 314, 354, 392, 395, 428, 435, 645
FokI GGATG 2 cut(s) 440, 634
FriOI GRGCYC 1 cut(s) 45
FseI GGCCGGCC 1 cut(s) 170
Fsp4HI GCNGC 8 cut(s) 253, 314, 354, 392, 395, 428, 435, 645
FspBI CTAG 4 cut(s) 476, 705, 723, 798
GlaI GCGC 4 cut(s) 256, 317, 390, 521
GluI GCNGC 8 cut(s) 253, 314, 354, 392, 395, 428, 435, 645
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 523
HapII CCGG 6 cut(s) 60, 167, 641, 665, 672, 701
HgaI GACGC 3 cut(s) 269, 357, 374
HhaI GCGC 4 cut(s) 257, 318, 391, 522
Hin1I GRCGYC 2 cut(s) 261, 530
Hin1II CATG 3 cut(s) 505, 866, 925
Hin6I GCGC 4 cut(s) 255, 316, 389, 520
HinP1I GCGC 4 cut(s) 255, 316, 389, 520
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 7 cut(s) 75, 191, 446, 556, 697, 988, 1025
HpaII CCGG 6 cut(s) 60, 167, 641, 665, 672, 701
HphI GGTGA 4 cut(s) 166, 193, 232, 661
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 5 cut(s) 110, 190, 418, 621, 1030
Hpy188III TCNNGA 2 cut(s) 16, 746
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 7 cut(s) 263, 368, 373, 376, 529, 532, 535
HpyAV CCTTC 2 cut(s) 288, 334
HpyCH4III ACNGT 1 cut(s) 1009
HpyCH4IV ACGT 3 cut(s) 309, 530, 627
HpyCH4V TGCA 7 cut(s) 138, 313, 616, 925, 961, 1012, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 319, 470, 841, 882
HpyF3I CTNAG 2 cut(s) 648, 747
HpySE526I ACGT 3 cut(s) 309, 530, 627
Hsp92I GRCGYC 2 cut(s) 261, 530
Hsp92II CATG 3 cut(s) 505, 866, 925
HspAI GCGC 4 cut(s) 255, 316, 389, 520
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 544, 730
LmnI GCTCC 2 cut(s) 40, 748
Lsp1109I GCAGC 3 cut(s) 325, 403, 406
LweI GCATC 4 cut(s) 147, 625, 822, 1021
MaeI CTAG 4 cut(s) 476, 705, 723, 798
MaeII ACGT 3 cut(s) 309, 530, 627
MaeIII GTNAC 2 cut(s) 571, 667
MalI GATC 2 cut(s) 546, 732
MbiI CCGCTC 2 cut(s) 305, 647
MboI GATC 2 cut(s) 544, 730
MboII GAAGA 4 cut(s) 770, 778, 903, 1054
MfeI CAATTG 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 4 cut(s) 403, 458, 907, 966
MluI ACGCGT 1 cut(s) 366
MlyI GAGTC 4 cut(s) 69, 185, 706, 997
MmeI TCCRAC 2 cut(s) 171, 213
Mph1103I ATGCAT 1 cut(s) 1036
MroNI GCCGGC 1 cut(s) 166
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 1 cut(s) 819
MslI CAYNNNNRTG 1 cut(s) 611
MspA1I CMGCKG 2 cut(s) 180, 430
MspI CCGG 6 cut(s) 60, 167, 641, 665, 672, 701
MspR9I CCNGG 2 cut(s) 641, 825
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 1 cut(s) 825
MvnI CGCG 4 cut(s) 225, 255, 368, 389
MwoI GCNNNNNNNGC 5 cut(s) 60, 319, 470, 841, 882
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 641
NdeII GATC 2 cut(s) 544, 730
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 3 cut(s) 505, 866, 925
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 2 cut(s) 30, 1027
NmuCI GTSAC 2 cut(s) 571, 667
NsiI ATGCAT 1 cut(s) 1036
NspI RCATGY 2 cut(s) 505, 925
OliI CACNNNNGTG 1 cut(s) 611
PciI ACATGT 1 cut(s) 501
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 530
PdiI GCCGGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 3 cut(s) 446, 556, 1025
PflFI GACNNNGTC 2 cut(s) 116, 529
PfoI TCCNGGA 1 cut(s) 823
PkrI GCNGC 8 cut(s) 254, 315, 355, 393, 396, 429, 436, 646
PleI GAGTC 4 cut(s) 69, 185, 705, 996
PmaCI CACGTG 1 cut(s) 310
PmlI CACGTG 1 cut(s) 310
PpsI GAGTC 4 cut(s) 69, 185, 705, 996
Ppu21I YACGTR 2 cut(s) 310, 628
PscI ACATGT 1 cut(s) 501
PshBI ATTAAT 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 823
PspCI CACGTG 1 cut(s) 310
PspEI GGTNACC 1 cut(s) 667
PspGI CCWGG 1 cut(s) 823
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 4 cut(s) 70, 169, 183, 794
PsyI GACNNNGTC 2 cut(s) 116, 529
RigI GGCCGGCC 1 cut(s) 170
RsaI GTAC 5 cut(s) 422, 626, 638, 814, 947
RsaNI GTAC 5 cut(s) 421, 625, 637, 813, 946
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 819
SatI GCNGC 8 cut(s) 253, 314, 354, 392, 395, 428, 435, 645
Sau3AI GATC 2 cut(s) 544, 730
Sau96I GGNCC 4 cut(s) 70, 169, 183, 794
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 4 cut(s) 69, 185, 706, 997
ScrFI CCNGG 2 cut(s) 641, 825
SduI GDGCHC 1 cut(s) 45
SfaNI GCATC 4 cut(s) 147, 625, 822, 1021
SinI GGWCC 2 cut(s) 70, 183
SmiMI CAYNNNNRTG 1 cut(s) 611
SnaBI TACGTA 1 cut(s) 628
Sse9I AATT 4 cut(s) 403, 458, 907, 966
SspMI CTAG 4 cut(s) 476, 705, 723, 798
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 639, 823
StyI CCWWGG 3 cut(s) 475, 716, 797
TaaI ACNGT 1 cut(s) 1009
TaiI ACGT 3 cut(s) 312, 533, 630
TaqI TCGA 4 cut(s) 15, 78, 524, 729
TaqII GACCGA 1 cut(s) 87
TasI AATT 4 cut(s) 403, 458, 907, 966
TatI WGTACW 1 cut(s) 420
TauI GCSGC 5 cut(s) 255, 356, 430, 437, 647
TfiI GAWTC 3 cut(s) 446, 556, 1025
Tru1I TTAA 1 cut(s) 819
Tru9I TTAA 1 cut(s) 819
TscAI CASTG 2 cut(s) 167, 1014
TseFI GTSAC 2 cut(s) 571, 667
TseI GCWGC 3 cut(s) 313, 391, 394
Tsp45I GTSAC 2 cut(s) 571, 667
TspDTI ATGAA 1 cut(s) 848
TspRI CASTG 2 cut(s) 167, 1014
Tth111I GACNNNGTC 2 cut(s) 116, 529
VpaK11BI GGWCC 2 cut(s) 70, 183
VspI ATTAAT 1 cut(s) 819
XceI RCATGY 2 cut(s) 505, 925
XmaJI CCTAGG 2 cut(s) 475, 797
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 4 cut(s) 476, 705, 723, 798
ZraI GACGTC 1 cut(s) 531
ZrmI AGTACT 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.